Wall clock time and date at job start Tue Mar 31 2020 05:25:54 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50697 * 1 3 3 C 1.33383 * 125.20480 * 2 1 4 4 C 1.38423 * 114.92204 * 180.02562 * 3 2 1 5 5 C 1.50707 * 122.53809 * 179.97438 * 4 3 2 6 6 H 1.09007 * 109.46418 * 145.02963 * 5 4 3 7 7 C 1.53001 * 109.47112 * 265.02554 * 5 4 3 8 8 N 1.46497 * 109.46997 * 25.02704 * 5 4 3 9 9 C 1.34777 * 119.99525 * 154.99586 * 8 5 4 10 10 O 1.21283 * 120.00463 * 0.02562 * 9 8 5 11 11 C 1.50700 * 119.99675 * 179.72583 * 9 8 5 12 12 C 1.53004 * 109.47208 * 180.27843 * 11 9 8 13 13 C 1.50700 * 109.47208 * 180.02562 * 12 11 9 14 14 H 1.08002 * 119.99770 * 359.97438 * 13 12 11 15 15 C 1.37876 * 119.99720 * 179.97438 * 13 12 11 16 16 N 1.31514 * 120.00078 * 0.02562 * 15 13 12 17 17 Si 1.86803 * 119.99915 * 179.97438 * 15 13 12 18 18 H 1.48507 * 109.46699 * 0.02562 * 17 15 13 19 19 H 1.48492 * 109.47205 * 120.00012 * 17 15 13 20 20 H 1.48498 * 109.46958 * 240.00268 * 17 15 13 21 21 C 1.33384 * 114.92015 * 0.25004 * 4 3 2 22 22 C 1.50703 * 125.20192 * 179.75104 * 21 4 3 23 23 S 1.75880 * 109.59480 * 359.63515 * 21 4 3 24 24 H 1.09001 * 109.47068 * 90.00032 * 1 2 3 25 25 H 1.09004 * 109.47400 * 209.99763 * 1 2 3 26 26 H 1.08998 * 109.47093 * 329.99969 * 1 2 3 27 27 H 1.07997 * 122.53938 * 0.06268 * 3 2 1 28 28 H 1.08998 * 109.46617 * 180.02562 * 7 5 4 29 29 H 1.09003 * 109.47371 * 300.00142 * 7 5 4 30 30 H 1.09002 * 109.46839 * 60.00175 * 7 5 4 31 31 H 0.97000 * 120.00580 * 335.00332 * 8 5 4 32 32 H 1.09009 * 109.47352 * 300.27556 * 11 9 8 33 33 H 1.08998 * 109.47585 * 60.27844 * 11 9 8 34 34 H 1.09000 * 109.46887 * 300.00372 * 12 11 9 35 35 H 1.08998 * 109.46846 * 59.99549 * 12 11 9 36 36 H 0.97008 * 119.99515 * 180.02562 * 16 15 13 37 37 H 1.09003 * 109.47086 * 90.00604 * 22 21 4 38 38 H 1.08998 * 109.47154 * 210.00177 * 22 21 4 39 39 H 1.08999 * 109.47389 * 330.00501 * 22 21 4 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.2759 1.0899 0.0000 4 6 3.6379 0.8428 -0.0006 5 6 4.6623 1.9482 -0.0012 6 1 5.5272 1.6423 0.5875 7 6 5.1001 2.2370 -1.4385 8 7 4.0765 3.1571 0.5831 9 6 4.8725 4.0857 1.1492 10 8 6.0738 3.9208 1.1745 11 6 4.2705 5.3322 1.7449 12 6 5.3838 6.2162 2.3108 13 6 4.7817 7.4624 2.9069 14 1 3.7120 7.6095 2.8841 15 6 5.5965 8.4147 3.4815 16 7 6.8991 8.2358 3.5089 17 14 4.8503 9.9599 4.2199 18 1 3.3742 9.9209 4.0619 19 1 5.1913 10.0333 5.6633 20 1 5.3920 11.1534 3.5219 21 6 3.9750 -0.4478 -0.0063 22 6 5.3860 -0.9771 -0.0135 23 16 2.5209 -1.4372 -0.0009 24 1 -0.3633 0.0000 -1.0277 25 1 -0.3634 -0.8900 0.5138 26 1 -0.3633 0.8900 0.5138 27 1 1.8669 2.0894 0.0010 28 1 5.8413 3.0362 -1.4389 29 1 5.5359 1.3375 -1.8734 30 1 4.2351 2.5428 -2.0272 31 1 3.1157 3.2893 0.5627 32 1 3.7294 5.8793 0.9726 33 1 3.5829 5.0573 2.5447 34 1 5.9249 5.6692 3.0829 35 1 6.0714 6.4911 1.5109 36 1 7.4723 8.9057 3.9135 37 1 5.7300 -1.1084 1.0125 38 1 5.4116 -1.9362 -0.5307 39 1 6.0369 -0.2697 -0.5272 RHF calculation, no. of doubly occupied orbitals= 50 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000292790253.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:25:54 Heat of formation + Delta-G solvation = -31.096938 kcal Electronic energy + Delta-G solvation = -19288.721864 eV Core-core repulsion = 16322.051878 eV Total energy + Delta-G solvation = -2966.669987 eV No. of doubly occupied orbitals = 50 Molecular weight (most abundant/longest-lived isotopes) = 281.119 amu Computer time = 0.35 seconds Orbital eigenvalues (eV) -39.86957 -38.32915 -34.79868 -33.41725 -33.24251 -31.17676 -29.80832 -29.59848 -25.79595 -25.14636 -23.80353 -21.82503 -21.11992 -19.56124 -18.39835 -17.28636 -16.91321 -15.87033 -15.42689 -14.92627 -14.58455 -14.52108 -14.40306 -13.81441 -13.59215 -13.41246 -13.19141 -13.00773 -12.93528 -12.34865 -12.21854 -12.10055 -12.02804 -11.65891 -11.46228 -11.22638 -11.12798 -10.93026 -10.73241 -10.55795 -9.93484 -9.64034 -9.14549 -8.98570 -8.84057 -8.62752 -8.42560 -8.30356 -5.94469 -3.98619 0.78008 1.38847 1.75866 2.47464 3.29638 3.33712 3.40547 3.43843 3.60900 4.48967 4.51861 4.62305 4.87447 5.02910 5.12631 5.22824 5.27283 5.31531 5.38355 5.40560 5.42050 5.55306 5.62218 5.73147 5.78373 5.89829 5.98246 6.16431 6.24581 6.26697 6.29607 6.33085 6.82767 6.92393 7.76814 7.89014 7.92744 8.09416 8.40987 8.81929 9.10317 9.64839 11.16498 Molecular weight = 281.12amu Principal moments of inertia in cm(-1) A = 0.027908 B = 0.003234 C = 0.003007 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1003.058585 B = 8656.577313 C = 9308.865743 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.082 4.082 2 C -0.179 4.179 3 C -0.129 4.129 4 C -0.105 4.105 5 C 0.202 3.798 6 H 0.095 0.905 7 C -0.156 4.156 8 N -0.738 5.738 9 C 0.511 3.489 10 O -0.534 6.534 11 C -0.130 4.130 12 C 0.037 3.963 13 C -0.526 4.526 14 H 0.056 0.944 15 C 0.057 3.943 16 N -0.890 5.890 17 Si 0.892 3.108 18 H -0.273 1.273 19 H -0.284 1.284 20 H -0.284 1.284 21 C -0.172 4.172 22 C -0.087 4.087 23 S 0.090 5.910 24 H 0.074 0.926 25 H 0.067 0.933 26 H 0.078 0.922 27 H 0.139 0.861 28 H 0.068 0.932 29 H 0.061 0.939 30 H 0.056 0.944 31 H 0.395 0.605 32 H 0.079 0.921 33 H 0.079 0.921 34 H 0.023 0.977 35 H 0.024 0.976 36 H 0.260 0.740 37 H 0.077 0.923 38 H 0.068 0.932 39 H 0.081 0.919 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -11.493 -20.524 -9.935 25.535 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.140 4.140 2 C -0.296 4.296 3 C -0.159 4.159 4 C -0.117 4.117 5 C 0.095 3.905 6 H 0.112 0.888 7 C -0.215 4.215 8 N -0.393 5.393 9 C 0.300 3.700 10 O -0.409 6.409 11 C -0.170 4.170 12 C -0.001 4.001 13 C -0.564 4.564 14 H 0.074 0.926 15 C -0.144 4.144 16 N -0.528 5.528 17 Si 0.720 3.280 18 H -0.198 1.198 19 H -0.210 1.210 20 H -0.210 1.210 21 C -0.289 4.289 22 C -0.145 4.145 23 S 0.355 5.645 24 H 0.092 0.908 25 H 0.086 0.914 26 H 0.097 0.903 27 H 0.156 0.844 28 H 0.087 0.913 29 H 0.080 0.920 30 H 0.075 0.925 31 H 0.230 0.770 32 H 0.097 0.903 33 H 0.097 0.903 34 H 0.042 0.958 35 H 0.042 0.958 36 H 0.070 0.930 37 H 0.096 0.904 38 H 0.087 0.913 39 H 0.099 0.901 Dipole moment (debyes) X Y Z Total from point charges -10.735 -22.128 -9.845 26.491 hybrid contribution -0.622 2.400 0.406 2.512 sum -11.356 -19.728 -9.438 24.642 Atomic orbital electron populations 1.20335 0.87752 1.03245 1.02713 1.24348 0.99846 0.95484 1.09891 1.19804 0.92233 0.99295 1.04568 1.18881 0.94586 0.93925 1.04341 1.19384 0.93854 0.82357 0.94932 0.88752 1.22147 1.01813 1.02236 0.95308 1.46337 1.10518 1.20896 1.61542 1.21556 0.87246 0.84728 0.76472 1.90660 1.15166 1.77983 1.57136 1.21870 1.02174 0.92683 1.00292 1.18900 0.92016 0.92662 0.96485 1.21266 0.93304 1.03938 1.37911 0.92577 1.25029 0.94818 0.98384 0.96198 1.70014 1.03078 1.35005 1.44735 0.86541 0.79292 0.83272 0.78887 1.19757 1.21037 1.21027 1.24149 0.99158 0.95538 1.10059 1.20408 0.89730 1.01275 1.03137 1.84123 0.96413 1.09582 1.74387 0.90766 0.91397 0.90347 0.84382 0.91306 0.91961 0.92457 0.76977 0.90274 0.90307 0.95819 0.95805 0.93033 0.90448 0.91278 0.90062 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.08 -0.56 10.38 36.00 0.37 -0.19 16 2 C -0.18 -1.71 6.51 -36.01 -0.23 -1.94 16 3 C -0.13 -1.36 9.22 -41.21 -0.38 -1.74 16 4 C -0.11 -1.22 4.96 -106.25 -0.53 -1.75 16 5 C 0.20 2.70 2.24 -69.08 -0.16 2.55 16 6 H 0.09 1.43 6.96 -51.93 -0.36 1.07 16 7 C -0.16 -1.93 9.41 37.16 0.35 -1.58 16 8 N -0.74 -10.80 5.02 -54.93 -0.28 -11.07 16 9 C 0.51 9.95 7.79 -10.98 -0.09 9.87 16 10 O -0.53 -12.59 15.65 5.55 0.09 -12.50 16 11 C -0.13 -2.67 5.64 -27.88 -0.16 -2.83 16 12 C 0.04 1.00 4.26 -27.88 -0.12 0.88 16 13 C -0.53 -15.03 9.11 -34.44 -0.31 -15.35 16 14 H 0.06 1.52 7.74 -52.49 -0.41 1.11 16 15 C 0.06 1.68 5.46 -17.82 -0.10 1.58 16 16 N -0.89 -27.59 13.29 55.43 0.74 -26.85 16 17 Si 0.89 21.78 29.54 -169.99 -5.02 16.76 16 18 H -0.27 -6.44 7.11 56.52 0.40 -6.03 16 19 H -0.28 -6.88 7.11 56.52 0.40 -6.47 16 20 H -0.28 -6.87 7.11 56.52 0.40 -6.47 16 21 C -0.17 -1.83 6.50 -36.00 -0.23 -2.07 16 22 C -0.09 -0.77 9.79 36.01 0.35 -0.42 16 23 S 0.09 0.85 23.31 -107.50 -2.51 -1.65 16 24 H 0.07 0.44 8.14 -51.93 -0.42 0.01 16 25 H 0.07 0.41 8.14 -51.93 -0.42 -0.01 16 26 H 0.08 0.48 8.14 -51.93 -0.42 0.06 16 27 H 0.14 1.27 6.52 -52.49 -0.34 0.93 16 28 H 0.07 0.99 8.14 -51.93 -0.42 0.57 16 29 H 0.06 0.65 7.26 -51.93 -0.38 0.28 16 30 H 0.06 0.66 8.14 -51.93 -0.42 0.23 16 31 H 0.40 4.71 6.54 -40.82 -0.27 4.45 16 32 H 0.08 1.48 8.14 -51.92 -0.42 1.05 16 33 H 0.08 1.49 8.14 -51.93 -0.42 1.06 16 34 H 0.02 0.70 8.10 -51.93 -0.42 0.28 16 35 H 0.02 0.70 8.10 -51.93 -0.42 0.28 16 36 H 0.26 7.55 8.31 -40.82 -0.34 7.21 16 37 H 0.08 0.67 8.14 -51.93 -0.42 0.25 16 38 H 0.07 0.50 8.14 -51.93 -0.42 0.08 16 39 H 0.08 0.71 6.49 -51.93 -0.34 0.38 16 LS Contribution 338.70 15.07 5.10 5.10 Total: -1.00 -33.91 338.70 -8.97 -42.89 By element: Atomic # 1 Polarization: 6.18 SS G_CDS: -5.87 Total: 0.31 kcal Atomic # 6 Polarization: -11.75 SS G_CDS: -1.23 Total: -12.98 kcal Atomic # 7 Polarization: -38.38 SS G_CDS: 0.46 Total: -37.92 kcal Atomic # 8 Polarization: -12.59 SS G_CDS: 0.09 Total: -12.50 kcal Atomic # 14 Polarization: 21.78 SS G_CDS: -5.02 Total: 16.76 kcal Atomic # 16 Polarization: 0.85 SS G_CDS: -2.51 Total: -1.65 kcal Total LS contribution 5.10 Total: 5.10 kcal Total: -33.91 -8.97 -42.89 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000292790253.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 11.788 kcal (2) G-P(sol) polarization free energy of solvation -33.910 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -22.122 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.975 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.885 kcal (6) G-S(sol) free energy of system = (1) + (5) -31.097 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.35 seconds