Wall clock time and date at job start Tue Mar 31 2020 05:25:54 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50697 * 1 3 3 C 1.33383 * 125.20480 * 2 1 4 4 C 1.38423 * 114.92204 * 180.02562 * 3 2 1 5 5 C 1.50707 * 122.53809 * 179.97438 * 4 3 2 6 6 H 1.09007 * 109.46418 * 145.02963 * 5 4 3 7 7 C 1.53001 * 109.47112 * 265.02554 * 5 4 3 8 8 N 1.46497 * 109.46997 * 25.02704 * 5 4 3 9 9 C 1.34777 * 119.99525 * 154.99586 * 8 5 4 10 10 O 1.21283 * 120.00463 * 0.02562 * 9 8 5 11 11 C 1.50700 * 119.99675 * 179.72583 * 9 8 5 12 12 C 1.53004 * 109.47208 * 180.27843 * 11 9 8 13 13 C 1.50700 * 109.47208 * 180.02562 * 12 11 9 14 14 H 1.08002 * 119.99770 * 359.97438 * 13 12 11 15 15 C 1.37876 * 119.99720 * 179.97438 * 13 12 11 16 16 N 1.31514 * 120.00078 * 0.02562 * 15 13 12 17 17 Si 1.86803 * 119.99915 * 179.97438 * 15 13 12 18 18 H 1.48507 * 109.46699 * 0.02562 * 17 15 13 19 19 H 1.48492 * 109.47205 * 120.00012 * 17 15 13 20 20 H 1.48498 * 109.46958 * 240.00268 * 17 15 13 21 21 C 1.33384 * 114.92015 * 0.25004 * 4 3 2 22 22 C 1.50703 * 125.20192 * 179.75104 * 21 4 3 23 23 S 1.75880 * 109.59480 * 359.63515 * 21 4 3 24 24 H 1.09001 * 109.47068 * 90.00032 * 1 2 3 25 25 H 1.09004 * 109.47400 * 209.99763 * 1 2 3 26 26 H 1.08998 * 109.47093 * 329.99969 * 1 2 3 27 27 H 1.07997 * 122.53938 * 0.06268 * 3 2 1 28 28 H 1.08998 * 109.46617 * 180.02562 * 7 5 4 29 29 H 1.09003 * 109.47371 * 300.00142 * 7 5 4 30 30 H 1.09002 * 109.46839 * 60.00175 * 7 5 4 31 31 H 0.97000 * 120.00580 * 335.00332 * 8 5 4 32 32 H 1.09009 * 109.47352 * 300.27556 * 11 9 8 33 33 H 1.08998 * 109.47585 * 60.27844 * 11 9 8 34 34 H 1.09000 * 109.46887 * 300.00372 * 12 11 9 35 35 H 1.08998 * 109.46846 * 59.99549 * 12 11 9 36 36 H 0.97008 * 119.99515 * 180.02562 * 16 15 13 37 37 H 1.09003 * 109.47086 * 90.00604 * 22 21 4 38 38 H 1.08998 * 109.47154 * 210.00177 * 22 21 4 39 39 H 1.08999 * 109.47389 * 330.00501 * 22 21 4 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.2759 1.0899 0.0000 4 6 3.6379 0.8428 -0.0006 5 6 4.6623 1.9482 -0.0012 6 1 5.5272 1.6423 0.5875 7 6 5.1001 2.2370 -1.4385 8 7 4.0765 3.1571 0.5831 9 6 4.8725 4.0857 1.1492 10 8 6.0738 3.9208 1.1745 11 6 4.2705 5.3322 1.7449 12 6 5.3838 6.2162 2.3108 13 6 4.7817 7.4624 2.9069 14 1 3.7120 7.6095 2.8841 15 6 5.5965 8.4147 3.4815 16 7 6.8991 8.2358 3.5089 17 14 4.8503 9.9599 4.2199 18 1 3.3742 9.9209 4.0619 19 1 5.1913 10.0333 5.6633 20 1 5.3920 11.1534 3.5219 21 6 3.9750 -0.4478 -0.0063 22 6 5.3860 -0.9771 -0.0135 23 16 2.5209 -1.4372 -0.0009 24 1 -0.3633 0.0000 -1.0277 25 1 -0.3634 -0.8900 0.5138 26 1 -0.3633 0.8900 0.5138 27 1 1.8669 2.0894 0.0010 28 1 5.8413 3.0362 -1.4389 29 1 5.5359 1.3375 -1.8734 30 1 4.2351 2.5428 -2.0272 31 1 3.1157 3.2893 0.5627 32 1 3.7294 5.8793 0.9726 33 1 3.5829 5.0573 2.5447 34 1 5.9249 5.6692 3.0829 35 1 6.0714 6.4911 1.5109 36 1 7.4723 8.9057 3.9135 37 1 5.7300 -1.1084 1.0125 38 1 5.4116 -1.9362 -0.5307 39 1 6.0369 -0.2697 -0.5272 RHF calculation, no. of doubly occupied orbitals= 50 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000292790253.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:25:54 Heat of formation + Delta-G solvation = -52.146118 kcal Electronic energy + Delta-G solvation = -19289.634625 eV Core-core repulsion = 16322.051878 eV Total energy + Delta-G solvation = -2967.582748 eV No. of doubly occupied orbitals = 50 Molecular weight (most abundant/longest-lived isotopes) = 281.119 amu Computer time = 0.41 seconds Orbital eigenvalues (eV) -41.11930 -39.52228 -35.99295 -35.49865 -34.14249 -33.04265 -31.11990 -30.27007 -27.71224 -26.00587 -24.91945 -23.44470 -22.22816 -21.09015 -19.31604 -18.81756 -18.10753 -17.55727 -16.70509 -16.49580 -16.27426 -15.66504 -15.42090 -14.93256 -14.52297 -14.45664 -14.22357 -14.11917 -13.88915 -13.82397 -13.62204 -13.21834 -13.12625 -12.94021 -12.83325 -12.47778 -12.40919 -12.30183 -12.04114 -11.91524 -11.64302 -11.58254 -11.27366 -10.71389 -10.57261 -10.15800 -9.37283 -9.23996 -8.17315 -6.31218 0.00576 0.63667 0.98851 1.42751 1.44228 1.57497 1.63396 1.74223 2.27409 2.45850 3.15759 3.67461 3.85808 4.00855 4.14463 4.29257 4.30774 4.38332 4.50469 4.51841 4.56844 4.64899 4.69119 4.75337 4.77811 4.87276 5.02028 5.07835 5.11588 5.21643 5.24381 5.31657 5.50049 5.51735 5.64327 5.64543 5.86593 6.18675 6.60141 6.87419 7.34639 7.39163 8.95549 Molecular weight = 281.12amu Principal moments of inertia in cm(-1) A = 0.027908 B = 0.003234 C = 0.003007 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1003.058585 B = 8656.577313 C = 9308.865743 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.083 4.083 2 C -0.178 4.178 3 C -0.147 4.147 4 C -0.118 4.118 5 C 0.203 3.797 6 H 0.072 0.928 7 C -0.150 4.150 8 N -0.714 5.714 9 C 0.514 3.486 10 O -0.585 6.585 11 C -0.120 4.120 12 C 0.042 3.958 13 C -0.542 4.542 14 H 0.076 0.924 15 C -0.008 4.008 16 N -0.938 5.938 17 Si 0.974 3.026 18 H -0.252 1.252 19 H -0.281 1.281 20 H -0.280 1.280 21 C -0.183 4.183 22 C -0.089 4.089 23 S 0.111 5.889 24 H 0.086 0.914 25 H 0.076 0.924 26 H 0.087 0.913 27 H 0.150 0.850 28 H 0.041 0.959 29 H 0.080 0.920 30 H 0.069 0.931 31 H 0.412 0.588 32 H 0.105 0.895 33 H 0.103 0.897 34 H -0.018 1.018 35 H -0.017 1.017 36 H 0.262 0.738 37 H 0.076 0.924 38 H 0.086 0.914 39 H 0.077 0.923 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -14.634 -20.962 -10.302 27.562 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.142 4.142 2 C -0.295 4.295 3 C -0.176 4.176 4 C -0.130 4.130 5 C 0.097 3.903 6 H 0.090 0.910 7 C -0.209 4.209 8 N -0.368 5.368 9 C 0.302 3.698 10 O -0.465 6.465 11 C -0.159 4.159 12 C 0.005 3.995 13 C -0.580 4.580 14 H 0.094 0.906 15 C -0.205 4.205 16 N -0.578 5.578 17 Si 0.798 3.202 18 H -0.176 1.176 19 H -0.207 1.207 20 H -0.206 1.206 21 C -0.301 4.301 22 C -0.148 4.148 23 S 0.376 5.624 24 H 0.105 0.895 25 H 0.095 0.905 26 H 0.105 0.895 27 H 0.168 0.832 28 H 0.060 0.940 29 H 0.099 0.901 30 H 0.088 0.912 31 H 0.250 0.750 32 H 0.123 0.877 33 H 0.121 0.879 34 H 0.000 1.000 35 H 0.002 0.998 36 H 0.071 0.929 37 H 0.095 0.905 38 H 0.105 0.895 39 H 0.096 0.904 Dipole moment (debyes) X Y Z Total from point charges -13.946 -22.600 -10.237 28.461 hybrid contribution 0.345 2.415 0.490 2.488 sum -13.601 -20.186 -9.747 26.219 Atomic orbital electron populations 1.20453 0.85800 1.04133 1.03781 1.24738 1.01210 0.95093 1.08451 1.19920 0.91742 1.00312 1.05673 1.18753 0.94662 0.93496 1.06093 1.19375 0.93846 0.82210 0.94916 0.91041 1.22081 1.01630 1.02226 0.94915 1.46055 1.10996 1.20155 1.59639 1.21320 0.86686 0.85219 0.76559 1.90648 1.17345 1.79057 1.59427 1.21645 1.00142 0.92479 1.01661 1.18688 0.93145 0.93522 0.94177 1.21747 0.94327 1.04281 1.37612 0.90604 1.26144 0.95162 1.02548 0.96660 1.70190 1.05050 1.36588 1.45942 0.85267 0.79291 0.77992 0.77648 1.17583 1.20664 1.20621 1.24418 1.00442 0.95729 1.09504 1.20468 0.88943 1.02053 1.03316 1.84060 0.95448 1.09177 1.73692 0.89517 0.90533 0.89452 0.83244 0.93953 0.90095 0.91176 0.74972 0.87691 0.87931 0.99974 0.99841 0.92882 0.90547 0.89497 0.90410 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.08 -0.88 10.38 71.24 0.74 -0.14 16 2 C -0.18 -2.94 6.51 24.59 0.16 -2.78 16 3 C -0.15 -2.78 9.22 21.21 0.20 -2.58 16 4 C -0.12 -2.59 4.96 -20.92 -0.10 -2.69 16 5 C 0.20 5.41 2.24 44.25 0.10 5.50 16 6 H 0.07 2.25 6.96 -2.38 -0.02 2.24 16 7 C -0.15 -3.66 9.41 71.98 0.68 -2.98 16 8 N -0.71 -20.41 5.02 -446.08 -2.24 -22.65 16 9 C 0.51 20.30 7.79 87.66 0.68 20.98 16 10 O -0.59 -29.04 15.65 -3.04 -0.05 -29.08 16 11 C -0.12 -4.87 5.64 29.85 0.17 -4.70 16 12 C 0.04 2.39 4.26 29.85 0.13 2.51 16 13 C -0.54 -31.08 9.11 25.60 0.23 -30.85 16 14 H 0.08 3.96 7.74 -2.91 -0.02 3.94 16 15 C -0.01 -0.46 5.46 84.65 0.46 0.00 16 16 N -0.94 -59.93 13.29 21.45 0.28 -59.64 16 17 Si 0.97 44.55 29.54 68.60 2.03 46.57 16 18 H -0.25 -10.62 7.11 99.48 0.71 -9.91 16 19 H -0.28 -12.60 7.11 99.48 0.71 -11.90 16 20 H -0.28 -12.57 7.11 99.48 0.71 -11.86 16 21 C -0.18 -3.68 6.50 24.59 0.16 -3.52 16 22 C -0.09 -1.52 9.79 71.24 0.70 -0.82 16 23 S 0.11 1.87 23.31 -56.49 -1.32 0.55 16 24 H 0.09 0.74 8.14 -2.39 -0.02 0.72 16 25 H 0.08 0.69 8.14 -2.38 -0.02 0.67 16 26 H 0.09 0.80 8.14 -2.39 -0.02 0.78 16 27 H 0.15 2.35 6.52 -2.91 -0.02 2.33 16 28 H 0.04 1.25 8.14 -2.39 -0.02 1.23 16 29 H 0.08 1.65 7.26 -2.39 -0.02 1.63 16 30 H 0.07 1.51 8.14 -2.39 -0.02 1.49 16 31 H 0.41 8.99 6.54 -92.71 -0.61 8.39 16 32 H 0.10 3.73 8.14 -2.38 -0.02 3.71 16 33 H 0.10 3.69 8.14 -2.39 -0.02 3.67 16 34 H -0.02 -1.16 8.10 -2.39 -0.02 -1.18 16 35 H -0.02 -1.07 8.10 -2.39 -0.02 -1.09 16 36 H 0.26 15.65 8.31 -92.70 -0.77 14.88 16 37 H 0.08 1.30 8.14 -2.39 -0.02 1.29 16 38 H 0.09 1.13 8.14 -2.39 -0.02 1.11 16 39 H 0.08 1.35 6.49 -2.39 -0.02 1.34 16 Total: -1.00 -76.28 338.70 3.45 -72.84 By element: Atomic # 1 Polarization: 13.03 SS G_CDS: 0.44 Total: 13.47 kcal Atomic # 6 Polarization: -26.36 SS G_CDS: 4.30 Total: -22.06 kcal Atomic # 7 Polarization: -80.33 SS G_CDS: -1.95 Total: -82.29 kcal Atomic # 8 Polarization: -29.04 SS G_CDS: -0.05 Total: -29.08 kcal Atomic # 14 Polarization: 44.55 SS G_CDS: 2.03 Total: 46.57 kcal Atomic # 16 Polarization: 1.87 SS G_CDS: -1.32 Total: 0.55 kcal Total: -76.28 3.45 -72.84 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000292790253.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 20.692 kcal (2) G-P(sol) polarization free energy of solvation -76.285 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -55.593 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.447 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -72.838 kcal (6) G-S(sol) free energy of system = (1) + (5) -52.146 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.41 seconds