Wall clock time and date at job start Tue Mar 31 2020 05:38:32 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.17397 * 1 3 3 C 1.47202 * 179.97438 * 2 1 4 4 N 1.46505 * 109.47169 * 295.22620 * 3 2 1 5 5 C 1.36717 * 119.99749 * 264.09881 * 4 3 2 6 6 H 1.07996 * 120.00048 * 197.55989 * 5 4 3 7 7 C 1.39125 * 119.99924 * 17.56438 * 5 4 3 8 8 N 1.31325 * 120.00470 * 21.53947 * 7 5 4 9 9 Si 1.86803 * 119.99922 * 201.54139 * 7 5 4 10 10 H 1.48499 * 109.47123 * 89.99714 * 9 7 5 11 11 H 1.48498 * 109.47339 * 209.99892 * 9 7 5 12 12 H 1.48505 * 109.46790 * 330.00198 * 9 7 5 13 13 C 1.34775 * 120.00052 * 84.09547 * 4 3 2 14 14 O 1.21765 * 119.99542 * 180.02562 * 13 4 3 15 15 C 1.43198 * 120.00295 * 0.02562 * 13 4 3 16 16 C 3.79906 * 111.92435 * 10.33511 * 2 1 3 17 17 C 4.76685 * 102.84307 * 21.85807 * 2 1 3 18 18 C 1.39872 * 120.17699 * 302.44728 * 17 16 15 19 19 C 1.37877 * 119.82424 * 179.76995 * 18 17 16 20 20 C 1.38414 * 120.17060 * 0.51260 * 19 18 17 21 21 C 1.50696 * 119.82093 * 179.71933 * 20 19 18 22 22 C 1.53000 * 109.47226 * 270.02168 * 21 20 19 23 23 C 1.38411 * 120.35572 * 359.74555 * 20 19 18 24 24 C 1.37884 * 120.17386 * 359.97438 * 23 20 19 25 25 H 4.40643 * 5.51388 * 180.02562 * 4 1 2 26 26 H 1.09005 * 109.47217 * 175.22507 * 3 2 1 27 27 H 1.08999 * 109.47635 * 55.22181 * 3 2 1 28 28 H 0.96995 * 120.00043 * 180.02562 * 8 7 5 29 29 H 1.08004 * 120.08353 * 0.02920 * 18 17 16 30 30 H 1.07997 * 119.91402 * 180.23298 * 19 18 17 31 31 H 1.09003 * 109.47586 * 30.02384 * 21 20 19 32 32 H 1.08999 * 109.47053 * 150.02183 * 21 20 19 33 33 H 1.08999 * 109.47092 * 60.00040 * 22 21 20 34 34 H 1.09004 * 109.47475 * 180.02562 * 22 21 20 35 35 H 1.09000 * 109.47295 * 300.00117 * 22 21 20 36 36 H 1.07997 * 119.91660 * 179.97438 * 23 20 19 37 37 H 1.07998 * 120.08865 * 179.97438 * 24 23 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.1740 0.0000 0.0000 3 6 2.6460 0.0007 0.0000 4 7 3.1346 -0.5878 1.2495 5 6 3.4769 0.2204 2.2978 6 1 4.0912 -0.1645 3.0982 7 6 3.0337 1.5387 2.3333 8 7 1.9811 1.8968 1.6343 9 14 3.9358 2.7996 3.3753 10 1 5.0016 3.4409 2.5640 11 1 2.9776 3.8343 3.8404 12 1 4.5457 2.1259 4.5498 13 6 3.2466 -1.9259 1.3657 14 8 3.6523 -2.4149 2.4044 15 6 2.8886 -2.7724 0.2676 16 6 2.5925 -3.4671 -0.6323 17 6 2.2336 -4.3135 -1.7303 18 6 1.1546 -5.1960 -1.6144 19 6 0.8125 -6.0042 -2.6778 20 6 1.5401 -5.9513 -3.8541 21 6 1.1631 -6.8427 -5.0092 22 6 1.9196 -8.1680 -4.8987 23 6 2.6124 -5.0845 -3.9749 24 6 2.9637 -4.2658 -2.9225 25 1 -1.0499 -0.0002 0.0001 26 1 3.0089 1.0250 -0.0855 27 1 3.0097 -0.5853 -0.8441 28 1 1.6724 2.8159 1.6588 29 1 0.5885 -5.2413 -0.6958 30 1 -0.0227 -6.6834 -2.5912 31 1 0.0902 -7.0337 -4.9858 32 1 1.4244 -6.3523 -5.9469 33 1 1.6582 -8.6584 -3.9610 34 1 1.6473 -8.8126 -5.7345 35 1 2.9925 -7.9771 -4.9222 36 1 3.1755 -5.0494 -4.8957 37 1 3.8009 -3.5903 -3.0181 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000293770536.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:38:32 Heat of formation + Delta-G solvation = 100.132416 kcal Electronic energy + Delta-G solvation = -19885.442958 eV Core-core repulsion = 16789.019552 eV Total energy + Delta-G solvation = -3096.423406 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 281.116 amu Computer time = 0.52 seconds Orbital eigenvalues (eV) -39.40780 -38.62830 -35.24970 -34.87097 -32.67019 -32.00331 -31.30591 -31.01046 -29.18238 -26.60467 -25.44970 -24.22297 -22.65464 -21.93838 -20.79808 -18.12841 -17.88853 -16.83022 -16.39195 -15.60723 -15.56677 -15.03224 -14.38225 -14.15621 -14.06453 -13.85239 -13.57180 -13.39605 -13.01988 -12.72578 -12.55735 -12.30905 -12.17053 -11.75677 -11.52326 -11.12856 -11.11093 -11.00486 -10.65328 -10.59596 -10.42925 -9.92880 -9.44726 -9.39187 -8.99295 -8.98415 -8.79513 -8.21564 -8.03858 -6.51811 -3.99163 0.95188 1.39326 2.37396 3.05807 3.13853 3.19063 3.24458 3.70647 3.97524 4.04322 4.07075 4.33179 4.42160 4.61155 4.70785 4.95725 4.97384 5.07916 5.13301 5.17822 5.33663 5.37884 5.46984 5.51229 5.65031 5.75803 5.77593 5.95835 6.03477 6.10235 6.24882 6.42509 6.53098 6.55913 6.64490 6.93697 6.97737 7.39792 7.79387 7.93381 8.26564 8.78828 8.94745 9.14698 9.73951 10.47944 Molecular weight = 281.12amu Principal moments of inertia in cm(-1) A = 0.033876 B = 0.003290 C = 0.003172 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 826.339657 B = 8509.486274 C = 8825.067541 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.253 4.253 2 C -0.116 4.116 3 C 0.230 3.770 4 N -0.411 5.411 5 C -0.313 4.313 6 H 0.112 0.888 7 C 0.034 3.966 8 N -0.847 5.847 9 Si 0.930 3.070 10 H -0.274 1.274 11 H -0.283 1.283 12 H -0.266 1.266 13 C 0.531 3.469 14 O -0.573 6.573 15 C -0.122 4.122 16 C -0.134 4.134 17 C 0.029 3.971 18 C -0.094 4.094 19 C -0.117 4.117 20 C -0.084 4.084 21 C -0.084 4.084 22 C -0.147 4.147 23 C -0.117 4.117 24 C -0.095 4.095 25 H 0.200 0.800 26 H 0.113 0.887 27 H 0.065 0.935 28 H 0.273 0.727 29 H 0.127 0.873 30 H 0.124 0.876 31 H 0.071 0.929 32 H 0.071 0.929 33 H 0.056 0.944 34 H 0.056 0.944 35 H 0.056 0.944 36 H 0.124 0.876 37 H 0.128 0.872 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.275 -10.507 -14.418 17.985 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.272 4.272 2 C -0.117 4.117 3 C 0.107 3.893 4 N -0.126 5.126 5 C -0.441 4.441 6 H 0.130 0.870 7 C -0.173 4.173 8 N -0.483 5.483 9 Si 0.755 3.245 10 H -0.200 1.200 11 H -0.209 1.209 12 H -0.190 1.190 13 C 0.322 3.678 14 O -0.459 6.459 15 C -0.126 4.126 16 C -0.138 4.138 17 C 0.029 3.971 18 C -0.112 4.112 19 C -0.135 4.135 20 C -0.084 4.084 21 C -0.122 4.122 22 C -0.205 4.205 23 C -0.135 4.135 24 C -0.113 4.113 25 H 0.217 0.783 26 H 0.131 0.869 27 H 0.083 0.917 28 H 0.084 0.916 29 H 0.145 0.855 30 H 0.142 0.858 31 H 0.090 0.910 32 H 0.090 0.910 33 H 0.075 0.925 34 H 0.075 0.925 35 H 0.075 0.925 36 H 0.142 0.858 37 H 0.146 0.854 Dipole moment (debyes) X Y Z Total from point charges -2.154 -10.501 -13.906 17.559 hybrid contribution -0.109 0.841 0.523 0.997 sum -2.263 -9.660 -13.383 16.659 Atomic orbital electron populations 1.24256 0.95353 1.04809 1.02802 1.22996 0.94212 0.96718 0.97785 1.18325 0.84645 1.00647 0.85689 1.43605 1.53135 1.03340 1.12526 1.19805 1.29877 0.91451 1.02917 0.87020 1.25459 0.94994 0.98765 0.98102 1.70079 1.18886 1.19178 1.40177 0.85869 0.79093 0.79521 0.79989 1.20003 1.20860 1.19045 1.14669 0.87110 0.81366 0.84682 1.90720 1.52181 1.73895 1.29071 1.21575 0.99519 0.96964 0.94517 1.19120 1.00796 0.98844 0.94993 1.16029 0.96129 0.94826 0.90137 1.21308 0.95988 0.94838 0.99077 1.20896 1.00167 0.99675 0.92724 1.19994 0.95799 0.97073 0.95523 1.20545 1.00618 0.94993 0.96024 1.21757 1.00580 0.96288 1.01836 1.20890 0.97382 0.96486 0.98738 1.21279 0.99219 0.98869 0.91901 0.78250 0.86878 0.91708 0.91600 0.85486 0.85792 0.91038 0.91030 0.92483 0.92507 0.92485 0.85767 0.85434 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.25 -5.45 19.25 29.55 0.57 -4.88 16 2 C -0.12 -2.70 11.35 -37.12 -0.42 -3.12 16 3 C 0.23 5.29 4.91 -6.83 -0.03 5.26 16 4 N -0.41 -10.74 2.59 -120.66 -0.31 -11.05 16 5 C -0.31 -8.54 9.32 -15.04 -0.14 -8.68 16 6 H 0.11 3.17 7.38 -52.49 -0.39 2.78 16 7 C 0.03 0.85 4.86 -17.44 -0.08 0.77 16 8 N -0.85 -21.71 9.48 55.51 0.53 -21.18 16 9 Si 0.93 19.77 29.61 -169.99 -5.03 14.74 16 10 H -0.27 -5.68 7.11 56.52 0.40 -5.27 16 11 H -0.28 -5.98 7.11 56.52 0.40 -5.58 16 12 H -0.27 -5.72 7.11 56.52 0.40 -5.32 16 13 C 0.53 14.11 7.42 -14.34 -0.11 14.00 16 14 O -0.57 -16.96 16.74 5.13 0.09 -16.87 16 15 C -0.12 -2.80 11.66 -38.83 -0.45 -3.26 16 16 C -0.13 -2.65 13.25 -38.82 -0.51 -3.16 16 17 C 0.03 0.46 5.75 -106.74 -0.61 -0.15 16 18 C -0.09 -1.31 9.77 -39.10 -0.38 -1.69 16 19 C -0.12 -1.32 9.68 -39.65 -0.38 -1.70 16 20 C -0.08 -0.88 5.14 -104.50 -0.54 -1.41 16 21 C -0.08 -0.65 6.05 -27.89 -0.17 -0.82 16 22 C -0.15 -1.04 9.89 37.16 0.37 -0.67 16 23 C -0.12 -1.29 9.68 -39.65 -0.38 -1.67 16 24 C -0.09 -1.27 9.77 -39.10 -0.38 -1.65 16 25 H 0.20 3.49 7.80 -54.10 -0.42 3.07 16 26 H 0.11 2.63 6.44 -51.93 -0.33 2.30 16 27 H 0.06 1.32 7.13 -51.93 -0.37 0.95 16 28 H 0.27 6.62 8.31 -40.82 -0.34 6.28 16 29 H 0.13 1.70 8.06 -52.48 -0.42 1.28 16 30 H 0.12 1.10 8.06 -52.49 -0.42 0.68 16 31 H 0.07 0.49 8.08 -51.93 -0.42 0.07 16 32 H 0.07 0.49 8.08 -51.93 -0.42 0.07 16 33 H 0.06 0.42 8.14 -51.93 -0.42 0.00 16 34 H 0.06 0.32 8.14 -51.93 -0.42 -0.10 16 35 H 0.06 0.42 8.14 -51.93 -0.42 -0.01 16 36 H 0.12 1.06 8.06 -52.49 -0.42 0.64 16 37 H 0.13 1.57 8.06 -52.49 -0.42 1.15 16 LS Contribution 337.36 15.07 5.08 5.08 Total: -1.00 -31.38 337.36 -7.76 -39.15 By element: Atomic # 1 Polarization: 7.42 SS G_CDS: -4.45 Total: 2.98 kcal Atomic # 6 Polarization: -9.17 SS G_CDS: -3.67 Total: -12.84 kcal Atomic # 7 Polarization: -32.45 SS G_CDS: 0.21 Total: -32.23 kcal Atomic # 8 Polarization: -16.96 SS G_CDS: 0.09 Total: -16.87 kcal Atomic # 14 Polarization: 19.77 SS G_CDS: -5.03 Total: 14.74 kcal Total LS contribution 5.08 Total: 5.08 kcal Total: -31.38 -7.76 -39.15 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000293770536.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 139.279 kcal (2) G-P(sol) polarization free energy of solvation -31.382 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 107.897 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.764 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.146 kcal (6) G-S(sol) free energy of system = (1) + (5) 100.132 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.53 seconds