Wall clock time and date at job start Tue Mar 31 2020 05:38:31 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.17397 * 1 3 3 C 1.47202 * 179.97438 * 2 1 4 4 N 1.46505 * 109.47169 * 295.22620 * 3 2 1 5 5 C 1.36717 * 119.99749 * 264.09881 * 4 3 2 6 6 H 1.07996 * 120.00048 * 197.55989 * 5 4 3 7 7 C 1.39125 * 119.99924 * 17.56438 * 5 4 3 8 8 N 1.31325 * 120.00470 * 21.53947 * 7 5 4 9 9 Si 1.86803 * 119.99922 * 201.54139 * 7 5 4 10 10 H 1.48499 * 109.47123 * 89.99714 * 9 7 5 11 11 H 1.48498 * 109.47339 * 209.99892 * 9 7 5 12 12 H 1.48505 * 109.46790 * 330.00198 * 9 7 5 13 13 C 1.34775 * 120.00052 * 84.09547 * 4 3 2 14 14 O 1.21765 * 119.99542 * 180.02562 * 13 4 3 15 15 C 1.43198 * 120.00295 * 0.02562 * 13 4 3 16 16 C 3.79906 * 111.92435 * 10.33511 * 2 1 3 17 17 C 4.76685 * 102.84307 * 21.85807 * 2 1 3 18 18 C 1.39872 * 120.17699 * 302.44728 * 17 16 15 19 19 C 1.37877 * 119.82424 * 179.76995 * 18 17 16 20 20 C 1.38414 * 120.17060 * 0.51260 * 19 18 17 21 21 C 1.50696 * 119.82093 * 179.71933 * 20 19 18 22 22 C 1.53000 * 109.47226 * 270.02168 * 21 20 19 23 23 C 1.38411 * 120.35572 * 359.74555 * 20 19 18 24 24 C 1.37884 * 120.17386 * 359.97438 * 23 20 19 25 25 H 4.40643 * 5.51388 * 180.02562 * 4 1 2 26 26 H 1.09005 * 109.47217 * 175.22507 * 3 2 1 27 27 H 1.08999 * 109.47635 * 55.22181 * 3 2 1 28 28 H 0.96995 * 120.00043 * 180.02562 * 8 7 5 29 29 H 1.08004 * 120.08353 * 0.02920 * 18 17 16 30 30 H 1.07997 * 119.91402 * 180.23298 * 19 18 17 31 31 H 1.09003 * 109.47586 * 30.02384 * 21 20 19 32 32 H 1.08999 * 109.47053 * 150.02183 * 21 20 19 33 33 H 1.08999 * 109.47092 * 60.00040 * 22 21 20 34 34 H 1.09004 * 109.47475 * 180.02562 * 22 21 20 35 35 H 1.09000 * 109.47295 * 300.00117 * 22 21 20 36 36 H 1.07997 * 119.91660 * 179.97438 * 23 20 19 37 37 H 1.07998 * 120.08865 * 179.97438 * 24 23 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.1740 0.0000 0.0000 3 6 2.6460 0.0007 0.0000 4 7 3.1346 -0.5878 1.2495 5 6 3.4769 0.2204 2.2978 6 1 4.0912 -0.1645 3.0982 7 6 3.0337 1.5387 2.3333 8 7 1.9811 1.8968 1.6343 9 14 3.9358 2.7996 3.3753 10 1 5.0016 3.4409 2.5640 11 1 2.9776 3.8343 3.8404 12 1 4.5457 2.1259 4.5498 13 6 3.2466 -1.9259 1.3657 14 8 3.6523 -2.4149 2.4044 15 6 2.8886 -2.7724 0.2676 16 6 2.5925 -3.4671 -0.6323 17 6 2.2336 -4.3135 -1.7303 18 6 1.1546 -5.1960 -1.6144 19 6 0.8125 -6.0042 -2.6778 20 6 1.5401 -5.9513 -3.8541 21 6 1.1631 -6.8427 -5.0092 22 6 1.9196 -8.1680 -4.8987 23 6 2.6124 -5.0845 -3.9749 24 6 2.9637 -4.2658 -2.9225 25 1 -1.0499 -0.0002 0.0001 26 1 3.0089 1.0250 -0.0855 27 1 3.0097 -0.5853 -0.8441 28 1 1.6724 2.8159 1.6588 29 1 0.5885 -5.2413 -0.6958 30 1 -0.0227 -6.6834 -2.5912 31 1 0.0902 -7.0337 -4.9858 32 1 1.4244 -6.3523 -5.9469 33 1 1.6582 -8.6584 -3.9610 34 1 1.6473 -8.8126 -5.7345 35 1 2.9925 -7.9771 -4.9222 36 1 3.1755 -5.0494 -4.8957 37 1 3.8009 -3.5903 -3.0181 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000293770536.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:38:31 Heat of formation + Delta-G solvation = 84.342384 kcal Electronic energy + Delta-G solvation = -19886.127665 eV Core-core repulsion = 16789.019552 eV Total energy + Delta-G solvation = -3097.108113 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 281.116 amu Computer time = 0.48 seconds Orbital eigenvalues (eV) -40.63511 -40.35107 -37.24625 -35.93280 -34.30810 -33.56463 -33.17438 -31.98202 -30.24115 -28.46604 -27.24645 -25.30971 -23.62156 -23.40964 -21.88253 -19.91845 -19.55228 -18.51567 -18.12360 -17.04920 -16.51950 -16.43115 -16.22278 -15.97826 -15.14208 -14.83697 -14.63549 -14.53433 -14.34703 -14.23106 -14.16236 -13.68200 -13.55939 -12.99342 -12.83883 -12.64441 -12.41212 -12.18588 -11.92905 -11.83798 -11.71544 -11.49827 -11.31744 -11.26389 -10.92340 -10.69037 -10.04229 -9.95059 -9.36042 -8.48207 -6.06901 -0.20848 0.43135 0.62636 1.41320 1.44013 1.53147 1.67727 1.96116 2.24146 2.29764 2.46652 2.68358 2.89833 3.05469 3.45350 3.79508 3.87069 3.90929 4.02312 4.26147 4.36389 4.43671 4.49785 4.58929 4.62908 4.70889 4.77933 5.04089 5.05384 5.15418 5.18220 5.29392 5.34216 5.36544 5.46101 5.49738 5.66079 5.86097 5.98125 6.20713 6.28583 6.91878 7.03174 7.15095 7.74118 8.50532 Molecular weight = 281.12amu Principal moments of inertia in cm(-1) A = 0.033876 B = 0.003290 C = 0.003172 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 826.339657 B = 8509.486274 C = 8825.067541 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.235 4.235 2 C -0.161 4.161 3 C 0.235 3.765 4 N -0.415 5.415 5 C -0.357 4.357 6 H 0.086 0.914 7 C 0.008 3.992 8 N -0.857 5.857 9 Si 0.999 3.001 10 H -0.259 1.259 11 H -0.272 1.272 12 H -0.274 1.274 13 C 0.522 3.478 14 O -0.625 6.625 15 C -0.197 4.197 16 C -0.072 4.072 17 C -0.022 4.022 18 C -0.098 4.098 19 C -0.116 4.116 20 C -0.068 4.068 21 C -0.084 4.084 22 C -0.147 4.147 23 C -0.116 4.116 24 C -0.093 4.093 25 H 0.238 0.762 26 H 0.106 0.894 27 H 0.083 0.917 28 H 0.281 0.719 29 H 0.124 0.876 30 H 0.152 0.848 31 H 0.085 0.915 32 H 0.087 0.913 33 H 0.051 0.949 34 H 0.072 0.928 35 H 0.052 0.948 36 H 0.156 0.844 37 H 0.133 0.867 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.608 -11.176 -17.423 21.011 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.253 4.253 2 C -0.162 4.162 3 C 0.113 3.887 4 N -0.129 5.129 5 C -0.484 4.484 6 H 0.104 0.896 7 C -0.198 4.198 8 N -0.492 5.492 9 Si 0.821 3.179 10 H -0.184 1.184 11 H -0.197 1.197 12 H -0.199 1.199 13 C 0.313 3.687 14 O -0.515 6.515 15 C -0.200 4.200 16 C -0.075 4.075 17 C -0.022 4.022 18 C -0.116 4.116 19 C -0.134 4.134 20 C -0.068 4.068 21 C -0.121 4.121 22 C -0.205 4.205 23 C -0.133 4.133 24 C -0.111 4.111 25 H 0.254 0.746 26 H 0.124 0.876 27 H 0.101 0.899 28 H 0.091 0.909 29 H 0.142 0.858 30 H 0.170 0.830 31 H 0.104 0.896 32 H 0.105 0.895 33 H 0.070 0.930 34 H 0.091 0.909 35 H 0.072 0.928 36 H 0.173 0.827 37 H 0.151 0.849 Dipole moment (debyes) X Y Z Total from point charges -3.510 -11.154 -16.961 20.601 hybrid contribution 0.170 0.893 1.226 1.527 sum -3.340 -10.261 -15.734 19.079 Atomic orbital electron populations 1.25179 0.96341 1.02948 1.00814 1.23266 0.94858 0.98468 0.99614 1.18320 0.85172 1.00190 0.85027 1.43773 1.52556 1.03381 1.13196 1.19780 1.31887 0.92976 1.03775 0.89629 1.26256 0.95142 0.99394 0.99022 1.70151 1.18937 1.19865 1.40207 0.84867 0.78188 0.76739 0.78121 1.18374 1.19698 1.19882 1.15027 0.86639 0.81840 0.85156 1.90636 1.54644 1.74895 1.31364 1.20931 1.03319 0.99767 0.96009 1.19830 0.97077 0.96641 0.93977 1.16264 0.98984 0.96794 0.90166 1.21404 0.95337 0.94845 1.00057 1.21212 1.00917 0.99231 0.92045 1.20473 0.94360 0.95989 0.95959 1.20649 1.01616 0.94641 0.95185 1.21759 1.00266 0.96099 1.02341 1.21247 0.97593 0.95484 0.98989 1.21432 0.98933 0.99283 0.91500 0.74558 0.87631 0.89894 0.90880 0.85817 0.82993 0.89649 0.89463 0.92997 0.90868 0.92845 0.82665 0.84946 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.23 -9.89 19.25 74.32 1.43 -8.46 16 2 C -0.16 -7.61 11.35 31.13 0.35 -7.25 16 3 C 0.23 11.25 4.91 84.57 0.42 11.67 16 4 N -0.42 -23.06 2.59 -653.84 -1.69 -24.75 16 5 C -0.36 -20.59 9.32 84.14 0.78 -19.81 16 6 H 0.09 5.25 7.38 -2.91 -0.02 5.23 16 7 C 0.01 0.42 4.86 84.98 0.41 0.83 16 8 N -0.86 -44.17 9.48 21.69 0.21 -43.97 16 9 Si 1.00 41.00 29.61 68.60 2.03 43.03 16 10 H -0.26 -9.99 7.11 99.48 0.71 -9.29 16 11 H -0.27 -10.65 7.11 99.48 0.71 -9.94 16 12 H -0.27 -11.55 7.11 99.48 0.71 -10.84 16 13 C 0.52 29.81 7.42 85.49 0.63 30.44 16 14 O -0.63 -40.15 16.74 -4.56 -0.08 -40.22 16 15 C -0.20 -9.60 11.66 30.01 0.35 -9.25 16 16 C -0.07 -2.93 13.25 30.01 0.40 -2.53 16 17 C -0.02 -0.69 5.75 -21.24 -0.12 -0.81 16 18 C -0.10 -2.61 9.77 22.58 0.22 -2.39 16 19 C -0.12 -2.27 9.68 22.23 0.22 -2.05 16 20 C -0.07 -1.16 5.14 -19.78 -0.10 -1.26 16 21 C -0.08 -0.89 6.05 29.85 0.18 -0.71 16 22 C -0.15 -1.48 9.89 71.98 0.71 -0.77 16 23 C -0.12 -2.15 9.68 22.23 0.22 -1.93 16 24 C -0.09 -2.35 9.77 22.58 0.22 -2.13 16 25 H 0.24 7.67 7.80 -4.42 -0.03 7.63 16 26 H 0.11 5.10 6.44 -2.38 -0.02 5.08 16 27 H 0.08 3.54 7.13 -2.39 -0.02 3.53 16 28 H 0.28 13.42 8.31 -92.71 -0.77 12.65 16 29 H 0.12 3.28 8.06 -2.91 -0.02 3.26 16 30 H 0.15 2.10 8.06 -2.91 -0.02 2.08 16 31 H 0.08 0.74 8.08 -2.39 -0.02 0.72 16 32 H 0.09 0.73 8.08 -2.39 -0.02 0.71 16 33 H 0.05 0.58 8.14 -2.39 -0.02 0.56 16 34 H 0.07 0.53 8.14 -2.38 -0.02 0.51 16 35 H 0.05 0.58 8.14 -2.39 -0.02 0.57 16 36 H 0.16 1.94 8.06 -2.91 -0.02 1.91 16 37 H 0.13 3.11 8.06 -2.91 -0.02 3.09 16 Total: -1.00 -72.72 337.36 7.86 -64.87 By element: Atomic # 1 Polarization: 16.38 SS G_CDS: 1.07 Total: 17.45 kcal Atomic # 6 Polarization: -22.73 SS G_CDS: 6.32 Total: -16.41 kcal Atomic # 7 Polarization: -67.23 SS G_CDS: -1.49 Total: -68.72 kcal Atomic # 8 Polarization: -40.15 SS G_CDS: -0.08 Total: -40.22 kcal Atomic # 14 Polarization: 41.00 SS G_CDS: 2.03 Total: 43.03 kcal Total: -72.72 7.86 -64.87 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000293770536.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 149.210 kcal (2) G-P(sol) polarization free energy of solvation -72.724 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 76.486 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 7.857 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -64.868 kcal (6) G-S(sol) free energy of system = (1) + (5) 84.342 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.48 seconds