Wall clock time and date at job start Tue Mar 31 2020 05:06:01 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31512 * 1 3 3 Si 1.86806 * 119.99725 * 2 1 4 4 H 1.48494 * 109.47041 * 180.02562 * 3 2 1 5 5 H 1.48504 * 109.46899 * 299.99788 * 3 2 1 6 6 H 1.48500 * 109.47314 * 59.99911 * 3 2 1 7 7 C 1.37873 * 120.00241 * 179.97438 * 2 1 3 8 8 H 1.08010 * 119.99857 * 180.02562 * 7 2 1 9 9 C 1.50694 * 120.00035 * 359.97438 * 7 2 1 10 10 C 1.52998 * 109.47175 * 179.97438 * 9 7 2 11 11 C 1.50699 * 109.47507 * 180.02562 * 10 9 7 12 12 O 1.21300 * 119.99592 * 359.97438 * 11 10 9 13 13 N 1.34776 * 120.00635 * 180.02562 * 11 10 9 14 14 C 1.40125 * 120.00279 * 185.53539 * 13 11 10 15 15 C 1.38716 * 120.08623 * 24.79449 * 14 13 11 16 16 C 1.38201 * 119.98009 * 180.02562 * 15 14 13 17 17 C 1.38274 * 120.16413 * 359.97438 * 16 15 14 18 18 C 1.38246 * 120.18379 * 0.02562 * 17 16 15 19 19 C 1.38553 * 120.00789 * 0.02562 * 18 17 16 20 20 O 1.35984 * 120.07963 * 180.02562 * 19 18 17 21 21 C 1.42891 * 116.99628 * 359.95443 * 20 19 18 22 22 C 1.53005 * 109.46756 * 179.97438 * 21 20 19 23 23 F 1.39903 * 109.47008 * 65.00215 * 22 21 20 24 24 H 0.96998 * 120.00391 * 359.97438 * 1 2 3 25 25 H 1.08996 * 109.47141 * 60.00086 * 9 7 2 26 26 H 1.09006 * 109.47271 * 299.99853 * 9 7 2 27 27 H 1.09003 * 109.47516 * 59.99607 * 10 9 7 28 28 H 1.08998 * 109.47091 * 300.00338 * 10 9 7 29 29 H 0.97005 * 119.99720 * 5.52642 * 13 11 10 30 30 H 1.07995 * 120.01611 * 0.02562 * 15 14 13 31 31 H 1.08003 * 119.91883 * 180.02562 * 16 15 14 32 32 H 1.08000 * 119.90931 * 179.74347 * 17 16 15 33 33 H 1.07990 * 119.99983 * 180.02562 * 18 17 16 34 34 H 1.09000 * 109.47647 * 299.99773 * 21 20 19 35 35 H 1.09000 * 109.47593 * 60.00316 * 21 20 19 36 36 H 1.09000 * 109.46984 * 184.99862 * 22 21 20 37 37 H 1.09003 * 109.47308 * 304.99770 * 22 21 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2491 1.6178 0.0000 4 1 3.7090 1.3465 -0.0006 5 1 1.8903 2.3965 -1.2126 6 1 1.8903 2.3966 1.2125 7 6 2.0045 -1.1940 0.0005 8 1 3.0846 -1.1939 0.0010 9 6 1.2511 -2.4991 0.0017 10 6 2.2454 -3.6619 0.0015 11 6 1.4921 -4.9671 0.0020 12 8 0.2791 -4.9672 0.0030 13 7 2.1659 -6.1343 0.0024 14 6 1.4703 -7.3451 -0.1142 15 6 0.2256 -7.3758 -0.7257 16 6 -0.4589 -8.5711 -0.8391 17 6 0.0941 -9.7380 -0.3445 18 6 1.3341 -9.7151 0.2662 19 6 2.0263 -8.5207 0.3847 20 8 3.2463 -8.4967 0.9848 21 6 3.7545 -9.7404 1.4714 22 6 5.1273 -9.5160 2.1086 23 9 4.9894 -8.7045 3.2398 24 1 -0.4850 0.8400 0.0004 25 1 0.6242 -2.5574 -0.8880 26 1 0.6248 -2.5563 0.8920 27 1 2.8729 -3.6038 0.8909 28 1 2.8714 -3.6045 -0.8890 29 1 3.1326 -6.1362 0.0833 30 1 -0.2086 -6.4661 -1.1133 31 1 -1.4277 -8.5940 -1.3158 32 1 -0.4462 -10.6690 -0.4316 33 1 1.7634 -10.6283 0.6510 34 1 3.0698 -10.1462 2.2162 35 1 3.8491 -10.4432 0.6436 36 1 5.5539 -10.4758 2.3999 37 1 5.7862 -9.0287 1.3899 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000296377506.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:06:01 Heat of formation + Delta-G solvation = -107.030500 kcal Electronic energy + Delta-G solvation = -21162.994507 eV Core-core repulsion = 17626.818618 eV Total energy + Delta-G solvation = -3536.175889 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 281.121 amu Computer time = 1.16 seconds Orbital eigenvalues (eV) -47.90429 -40.68236 -39.15893 -37.32442 -34.50762 -33.49226 -31.45719 -31.17936 -30.00896 -28.87987 -25.73132 -24.32650 -22.79825 -22.05753 -21.17899 -19.61939 -18.63144 -17.30490 -17.00927 -16.90933 -16.12032 -15.90906 -15.62805 -15.37595 -14.95620 -14.79930 -14.49727 -14.38698 -14.07080 -13.28812 -13.13823 -12.88077 -12.29543 -12.17508 -11.84005 -11.65601 -11.59905 -11.29061 -11.16778 -11.08751 -10.94730 -10.58202 -10.30123 -9.97994 -9.66770 -9.18117 -9.03816 -8.57424 -8.32718 -7.70377 -5.96234 -4.00591 1.31058 1.38295 2.78945 3.09246 3.33417 3.37687 3.41472 3.45036 3.85503 4.10722 4.33277 4.47929 4.51709 4.64361 4.78950 4.80962 5.00250 5.14394 5.36042 5.39055 5.40915 5.41360 5.66342 5.87774 6.08129 6.18029 6.22384 6.26375 6.51771 6.64968 6.82341 6.86682 7.28796 7.73276 7.75387 7.84097 8.05806 8.36962 8.62011 9.07521 9.63158 11.14763 Molecular weight = 281.12amu Principal moments of inertia in cm(-1) A = 0.018721 B = 0.003649 C = 0.003112 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1495.287415 B = 7670.805332 C = 8995.525636 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.889 5.889 2 C 0.058 3.942 3 Si 0.893 3.107 4 H -0.273 1.273 5 H -0.284 1.284 6 H -0.284 1.284 7 C -0.527 4.527 8 H 0.057 0.943 9 C 0.036 3.964 10 C -0.129 4.129 11 C 0.510 3.490 12 O -0.515 6.515 13 N -0.675 5.675 14 C 0.139 3.861 15 C -0.100 4.100 16 C -0.130 4.130 17 C -0.111 4.111 18 C -0.189 4.189 19 C 0.087 3.913 20 O -0.312 6.312 21 C 0.028 3.972 22 C 0.067 3.933 23 F -0.209 7.209 24 H 0.260 0.740 25 H 0.025 0.975 26 H 0.025 0.975 27 H 0.083 0.917 28 H 0.084 0.916 29 H 0.412 0.588 30 H 0.156 0.844 31 H 0.126 0.874 32 H 0.122 0.878 33 H 0.126 0.874 34 H 0.073 0.927 35 H 0.079 0.921 36 H 0.095 0.905 37 H 0.086 0.914 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 8.192 -24.335 0.264 25.678 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.528 5.528 2 C -0.144 4.144 3 Si 0.721 3.279 4 H -0.197 1.197 5 H -0.210 1.210 6 H -0.210 1.210 7 C -0.565 4.565 8 H 0.075 0.925 9 C -0.001 4.001 10 C -0.169 4.169 11 C 0.300 3.700 12 O -0.389 6.389 13 N -0.320 5.320 14 C 0.043 3.957 15 C -0.121 4.121 16 C -0.149 4.149 17 C -0.130 4.130 18 C -0.209 4.209 19 C 0.040 3.960 20 O -0.227 6.227 21 C -0.048 4.048 22 C 0.012 3.988 23 F -0.190 7.190 24 H 0.070 0.930 25 H 0.043 0.957 26 H 0.043 0.957 27 H 0.102 0.898 28 H 0.102 0.898 29 H 0.248 0.752 30 H 0.173 0.827 31 H 0.144 0.856 32 H 0.140 0.860 33 H 0.144 0.856 34 H 0.092 0.908 35 H 0.097 0.903 36 H 0.113 0.887 37 H 0.105 0.895 Dipole moment (debyes) X Y Z Total from point charges 7.317 -23.925 0.320 25.021 hybrid contribution 0.857 0.571 0.166 1.043 sum 8.174 -23.354 0.486 24.748 Atomic orbital electron populations 1.70003 1.06057 1.26510 1.50237 1.25021 0.94825 0.99252 0.95264 0.86529 0.80023 0.83794 0.77582 1.19728 1.21018 1.21003 1.21242 0.93006 0.90919 1.51350 0.92483 1.18926 0.93146 0.89307 0.98750 1.21912 1.00847 0.91170 1.02933 1.21834 0.88774 0.85412 0.73994 1.90627 1.14352 1.87174 1.46745 1.43814 1.11017 1.03971 1.73191 1.17284 0.94362 0.83961 1.00085 1.21448 0.93190 0.99968 0.97477 1.21021 1.00404 0.91945 1.01555 1.20850 0.94917 0.98366 0.98898 1.20944 0.97519 0.96118 1.06275 1.18634 0.86325 0.93696 0.97351 1.86027 1.31514 1.32602 1.72532 1.23423 0.95857 0.86327 0.99222 1.22048 0.96189 0.95327 0.85208 1.92832 1.96983 1.75639 1.53560 0.92986 0.95689 0.95676 0.89824 0.89760 0.75236 0.82669 0.85596 0.85987 0.85589 0.90849 0.90307 0.88670 0.89537 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.89 -27.43 13.29 55.43 0.74 -26.69 16 2 C 0.06 1.69 5.46 -17.82 -0.10 1.59 16 3 Si 0.89 21.73 29.54 -169.99 -5.02 16.71 16 4 H -0.27 -6.42 7.11 56.52 0.40 -6.02 16 5 H -0.28 -6.84 7.11 56.52 0.40 -6.44 16 6 H -0.28 -6.86 7.11 56.52 0.40 -6.46 16 7 C -0.53 -14.96 9.11 -34.44 -0.31 -15.28 16 8 H 0.06 1.53 7.74 -52.48 -0.41 1.13 16 9 C 0.04 0.97 4.26 -27.89 -0.12 0.85 16 10 C -0.13 -2.63 5.64 -27.88 -0.16 -2.78 16 11 C 0.51 10.03 7.64 -10.99 -0.08 9.95 16 12 O -0.51 -11.91 13.15 5.54 0.07 -11.83 16 13 N -0.67 -10.79 5.29 -9.75 -0.05 -10.84 16 14 C 0.14 2.17 6.45 -83.50 -0.54 1.64 16 15 C -0.10 -1.59 8.72 -39.42 -0.34 -1.93 16 16 C -0.13 -1.66 10.04 -39.58 -0.40 -2.06 16 17 C -0.11 -1.21 10.04 -39.57 -0.40 -1.61 16 18 C -0.19 -2.06 9.04 -39.46 -0.36 -2.42 16 19 C 0.09 1.14 6.70 -39.07 -0.26 0.88 16 20 O -0.31 -3.69 9.55 -19.69 -0.19 -3.88 16 21 C 0.03 0.21 5.20 37.16 0.19 0.40 16 22 C 0.07 0.43 7.93 37.16 0.29 0.72 16 23 F -0.21 -2.29 17.35 2.25 0.04 -2.25 16 24 H 0.26 7.53 8.31 -40.82 -0.34 7.19 16 25 H 0.02 0.72 8.10 -51.93 -0.42 0.30 16 26 H 0.02 0.74 8.10 -51.93 -0.42 0.31 16 27 H 0.08 1.57 8.14 -51.93 -0.42 1.15 16 28 H 0.08 1.55 8.14 -51.93 -0.42 1.13 16 29 H 0.41 5.51 8.35 -40.82 -0.34 5.17 16 30 H 0.16 2.79 5.79 -52.49 -0.30 2.49 16 31 H 0.13 1.34 8.06 -52.48 -0.42 0.92 16 32 H 0.12 0.98 8.06 -52.49 -0.42 0.56 16 33 H 0.13 0.99 6.30 -52.49 -0.33 0.66 16 34 H 0.07 0.53 7.67 -51.93 -0.40 0.13 16 35 H 0.08 0.40 7.66 -51.93 -0.40 0.00 16 36 H 0.10 0.29 8.14 -51.93 -0.42 -0.13 16 37 H 0.09 0.47 8.14 -51.93 -0.42 0.05 16 LS Contribution 322.39 15.07 4.86 4.86 Total: -1.00 -35.02 322.39 -6.82 -41.84 By element: Atomic # 1 Polarization: 6.82 SS G_CDS: -4.69 Total: 2.13 kcal Atomic # 6 Polarization: -7.46 SS G_CDS: -2.58 Total: -10.04 kcal Atomic # 7 Polarization: -38.22 SS G_CDS: 0.68 Total: -37.53 kcal Atomic # 8 Polarization: -15.60 SS G_CDS: -0.12 Total: -15.71 kcal Atomic # 9 Polarization: -2.29 SS G_CDS: 0.04 Total: -2.25 kcal Atomic # 14 Polarization: 21.73 SS G_CDS: -5.02 Total: 16.71 kcal Total LS contribution 4.86 Total: 4.86 kcal Total: -35.02 -6.82 -41.84 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000296377506.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -65.189 kcal (2) G-P(sol) polarization free energy of solvation -35.019 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -100.208 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.822 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.842 kcal (6) G-S(sol) free energy of system = (1) + (5) -107.030 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.16 seconds