Wall clock time and date at job start Tue Mar 31 2020 05:06:00 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31512 * 1 3 3 Si 1.86806 * 119.99725 * 2 1 4 4 H 1.48494 * 109.47041 * 180.02562 * 3 2 1 5 5 H 1.48504 * 109.46899 * 299.99788 * 3 2 1 6 6 H 1.48500 * 109.47314 * 59.99911 * 3 2 1 7 7 C 1.37873 * 120.00241 * 179.97438 * 2 1 3 8 8 H 1.08010 * 119.99857 * 180.02562 * 7 2 1 9 9 C 1.50694 * 120.00035 * 359.97438 * 7 2 1 10 10 C 1.52998 * 109.47175 * 179.97438 * 9 7 2 11 11 C 1.50699 * 109.47507 * 180.02562 * 10 9 7 12 12 O 1.21300 * 119.99592 * 359.97438 * 11 10 9 13 13 N 1.34776 * 120.00635 * 180.02562 * 11 10 9 14 14 C 1.40125 * 120.00279 * 185.53539 * 13 11 10 15 15 C 1.38716 * 120.08623 * 24.79449 * 14 13 11 16 16 C 1.38201 * 119.98009 * 180.02562 * 15 14 13 17 17 C 1.38274 * 120.16413 * 359.97438 * 16 15 14 18 18 C 1.38246 * 120.18379 * 0.02562 * 17 16 15 19 19 C 1.38553 * 120.00789 * 0.02562 * 18 17 16 20 20 O 1.35984 * 120.07963 * 180.02562 * 19 18 17 21 21 C 1.42891 * 116.99628 * 359.95443 * 20 19 18 22 22 C 1.53005 * 109.46756 * 179.97438 * 21 20 19 23 23 F 1.39903 * 109.47008 * 65.00215 * 22 21 20 24 24 H 0.96998 * 120.00391 * 359.97438 * 1 2 3 25 25 H 1.08996 * 109.47141 * 60.00086 * 9 7 2 26 26 H 1.09006 * 109.47271 * 299.99853 * 9 7 2 27 27 H 1.09003 * 109.47516 * 59.99607 * 10 9 7 28 28 H 1.08998 * 109.47091 * 300.00338 * 10 9 7 29 29 H 0.97005 * 119.99720 * 5.52642 * 13 11 10 30 30 H 1.07995 * 120.01611 * 0.02562 * 15 14 13 31 31 H 1.08003 * 119.91883 * 180.02562 * 16 15 14 32 32 H 1.08000 * 119.90931 * 179.74347 * 17 16 15 33 33 H 1.07990 * 119.99983 * 180.02562 * 18 17 16 34 34 H 1.09000 * 109.47647 * 299.99773 * 21 20 19 35 35 H 1.09000 * 109.47593 * 60.00316 * 21 20 19 36 36 H 1.09000 * 109.46984 * 184.99862 * 22 21 20 37 37 H 1.09003 * 109.47308 * 304.99770 * 22 21 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2491 1.6178 0.0000 4 1 3.7090 1.3465 -0.0006 5 1 1.8903 2.3965 -1.2126 6 1 1.8903 2.3966 1.2125 7 6 2.0045 -1.1940 0.0005 8 1 3.0846 -1.1939 0.0010 9 6 1.2511 -2.4991 0.0017 10 6 2.2454 -3.6619 0.0015 11 6 1.4921 -4.9671 0.0020 12 8 0.2791 -4.9672 0.0030 13 7 2.1659 -6.1343 0.0024 14 6 1.4703 -7.3451 -0.1142 15 6 0.2256 -7.3758 -0.7257 16 6 -0.4589 -8.5711 -0.8391 17 6 0.0941 -9.7380 -0.3445 18 6 1.3341 -9.7151 0.2662 19 6 2.0263 -8.5207 0.3847 20 8 3.2463 -8.4967 0.9848 21 6 3.7545 -9.7404 1.4714 22 6 5.1273 -9.5160 2.1086 23 9 4.9894 -8.7045 3.2398 24 1 -0.4850 0.8400 0.0004 25 1 0.6242 -2.5574 -0.8880 26 1 0.6248 -2.5563 0.8920 27 1 2.8729 -3.6038 0.8909 28 1 2.8714 -3.6045 -0.8890 29 1 3.1326 -6.1362 0.0833 30 1 -0.2086 -6.4661 -1.1133 31 1 -1.4277 -8.5940 -1.3158 32 1 -0.4462 -10.6690 -0.4316 33 1 1.7634 -10.6283 0.6510 34 1 3.0698 -10.1462 2.2162 35 1 3.8491 -10.4432 0.6436 36 1 5.5539 -10.4758 2.3999 37 1 5.7862 -9.0287 1.3899 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000296377506.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:06:00 Heat of formation + Delta-G solvation = -130.659811 kcal Electronic energy + Delta-G solvation = -21164.019151 eV Core-core repulsion = 17626.818618 eV Total energy + Delta-G solvation = -3537.200533 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 281.121 amu Computer time = 0.66 seconds Orbital eigenvalues (eV) -48.56471 -41.82185 -40.40530 -38.31264 -35.87154 -35.56412 -33.14519 -32.07578 -31.09763 -29.95677 -27.67063 -25.15330 -24.26924 -22.96073 -22.64134 -21.12244 -19.58674 -18.82161 -18.29701 -17.66702 -17.60227 -16.87713 -16.59573 -16.51760 -16.46160 -15.92042 -15.71770 -15.45525 -15.26375 -14.75895 -14.48946 -14.22671 -13.81371 -13.63508 -13.27255 -12.85840 -12.69269 -12.54041 -12.45683 -12.27202 -11.97517 -11.95943 -11.73715 -11.65999 -11.55222 -11.28811 -10.67331 -10.58117 -9.59546 -8.79542 -8.18874 -6.32870 0.25451 0.40093 1.42151 1.43613 1.56986 1.62008 1.96709 2.15865 2.43531 2.82577 3.14391 3.56251 3.81335 3.88312 3.93767 4.05466 4.07998 4.24224 4.31216 4.39136 4.48437 4.49880 4.53011 4.59122 4.80883 4.90646 5.01298 5.14037 5.30071 5.46530 5.50937 5.59559 5.60206 5.81106 5.83735 6.16023 6.36226 6.43948 6.84863 7.16474 7.37337 8.94056 Molecular weight = 281.12amu Principal moments of inertia in cm(-1) A = 0.018721 B = 0.003649 C = 0.003112 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1495.287415 B = 7670.805332 C = 8995.525636 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.937 5.937 2 C -0.006 4.006 3 Si 0.975 3.025 4 H -0.253 1.253 5 H -0.279 1.279 6 H -0.280 1.280 7 C -0.543 4.543 8 H 0.076 0.924 9 C 0.042 3.958 10 C -0.117 4.117 11 C 0.510 3.490 12 O -0.561 6.561 13 N -0.657 5.657 14 C 0.099 3.901 15 C -0.126 4.126 16 C -0.141 4.141 17 C -0.096 4.096 18 C -0.183 4.183 19 C 0.092 3.908 20 O -0.330 6.330 21 C 0.017 3.983 22 C 0.059 3.941 23 F -0.239 7.239 24 H 0.263 0.737 25 H -0.013 1.013 26 H -0.016 1.016 27 H 0.105 0.895 28 H 0.109 0.891 29 H 0.424 0.576 30 H 0.120 0.880 31 H 0.141 0.859 32 H 0.161 0.839 33 H 0.166 0.834 34 H 0.079 0.921 35 H 0.111 0.889 36 H 0.135 0.865 37 H 0.094 0.906 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 10.664 -26.804 0.488 28.852 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.577 5.577 2 C -0.204 4.204 3 Si 0.798 3.202 4 H -0.177 1.177 5 H -0.205 1.205 6 H -0.206 1.206 7 C -0.581 4.581 8 H 0.094 0.906 9 C 0.005 3.995 10 C -0.156 4.156 11 C 0.301 3.699 12 O -0.439 6.439 13 N -0.302 5.302 14 C 0.004 3.996 15 C -0.146 4.146 16 C -0.159 4.159 17 C -0.115 4.115 18 C -0.202 4.202 19 C 0.045 3.955 20 O -0.245 6.245 21 C -0.058 4.058 22 C 0.005 3.995 23 F -0.220 7.220 24 H 0.072 0.928 25 H 0.005 0.995 26 H 0.002 0.998 27 H 0.123 0.877 28 H 0.127 0.873 29 H 0.262 0.738 30 H 0.138 0.862 31 H 0.158 0.842 32 H 0.179 0.821 33 H 0.184 0.816 34 H 0.097 0.903 35 H 0.129 0.871 36 H 0.153 0.847 37 H 0.113 0.887 Dipole moment (debyes) X Y Z Total from point charges 9.845 -26.453 0.545 28.231 hybrid contribution 0.090 1.140 0.103 1.148 sum 9.936 -25.313 0.648 27.201 Atomic orbital electron populations 1.70178 1.08285 1.27779 1.51451 1.26128 0.95734 1.03925 0.94581 0.85262 0.79275 0.78050 0.77582 1.17668 1.20523 1.20627 1.21723 0.94018 0.91536 1.50826 0.90609 1.18699 0.93634 0.92216 0.94972 1.21665 0.99458 0.89385 1.05129 1.21585 0.88083 0.86338 0.73935 1.90622 1.16172 1.87856 1.49287 1.43419 1.11444 1.03383 1.71985 1.17495 0.95046 0.84444 1.02647 1.21314 0.94173 1.00060 0.99090 1.21252 1.01003 0.91677 1.02010 1.21310 0.94787 0.98848 0.96506 1.21423 0.97153 0.96599 1.05025 1.18682 0.86963 0.93327 0.96530 1.86017 1.30753 1.35464 1.72278 1.23823 0.96221 0.85274 1.00484 1.22436 0.95995 0.96807 0.84275 1.92773 1.97107 1.76803 1.55318 0.92823 0.99496 0.99795 0.87682 0.87276 0.73790 0.86197 0.84151 0.82097 0.81632 0.90298 0.87083 0.84725 0.88737 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.94 -60.02 13.29 21.45 0.28 -59.73 16 2 C -0.01 -0.37 5.46 84.65 0.46 0.10 16 3 Si 0.97 44.87 29.54 68.60 2.03 46.90 16 4 H -0.25 -10.77 7.11 99.48 0.71 -10.07 16 5 H -0.28 -12.58 7.11 99.48 0.71 -11.87 16 6 H -0.28 -12.68 7.11 99.48 0.71 -11.97 16 7 C -0.54 -31.39 9.11 25.60 0.23 -31.16 16 8 H 0.08 4.00 7.74 -2.91 -0.02 3.98 16 9 C 0.04 2.41 4.26 29.85 0.13 2.54 16 10 C -0.12 -4.89 5.64 29.85 0.17 -4.72 16 11 C 0.51 21.18 7.64 87.66 0.67 21.85 16 12 O -0.56 -28.19 13.15 -3.09 -0.04 -28.23 16 13 N -0.66 -21.55 5.29 -303.14 -1.60 -23.15 16 14 C 0.10 3.13 6.45 38.18 0.25 3.37 16 15 C -0.13 -4.18 8.72 22.38 0.20 -3.98 16 16 C -0.14 -3.50 10.04 22.27 0.22 -3.27 16 17 C -0.10 -1.77 10.04 22.28 0.22 -1.55 16 18 C -0.18 -3.32 9.04 22.35 0.20 -3.12 16 19 C 0.09 2.26 6.70 22.60 0.15 2.41 16 20 O -0.33 -7.09 9.55 -93.37 -0.89 -7.98 16 21 C 0.02 0.19 5.20 71.98 0.37 0.56 16 22 C 0.06 0.57 7.93 71.98 0.57 1.14 16 23 F -0.24 -4.85 17.35 44.97 0.78 -4.07 16 24 H 0.26 15.72 8.31 -92.71 -0.77 14.95 16 25 H -0.01 -0.85 8.10 -2.39 -0.02 -0.87 16 26 H -0.02 -1.05 8.10 -2.38 -0.02 -1.07 16 27 H 0.11 3.93 8.14 -2.39 -0.02 3.91 16 28 H 0.11 3.99 8.14 -2.39 -0.02 3.97 16 29 H 0.42 11.27 8.35 -92.70 -0.77 10.50 16 30 H 0.12 4.79 5.79 -2.91 -0.02 4.78 16 31 H 0.14 2.92 8.06 -2.91 -0.02 2.90 16 32 H 0.16 1.74 8.06 -2.91 -0.02 1.72 16 33 H 0.17 1.66 6.30 -2.92 -0.02 1.64 16 34 H 0.08 0.83 7.67 -2.39 -0.02 0.81 16 35 H 0.11 0.56 7.66 -2.39 -0.02 0.54 16 36 H 0.14 0.25 8.14 -2.39 -0.02 0.23 16 37 H 0.09 0.76 8.14 -2.39 -0.02 0.74 16 Total: -1.00 -82.00 322.39 4.72 -77.28 By element: Atomic # 1 Polarization: 14.49 SS G_CDS: 0.32 Total: 14.81 kcal Atomic # 6 Polarization: -19.68 SS G_CDS: 3.85 Total: -15.83 kcal Atomic # 7 Polarization: -81.56 SS G_CDS: -1.32 Total: -82.88 kcal Atomic # 8 Polarization: -35.28 SS G_CDS: -0.93 Total: -36.21 kcal Atomic # 9 Polarization: -4.85 SS G_CDS: 0.78 Total: -4.07 kcal Atomic # 14 Polarization: 44.87 SS G_CDS: 2.03 Total: 46.90 kcal Total: -82.00 4.72 -77.28 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000296377506.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -53.378 kcal (2) G-P(sol) polarization free energy of solvation -82.004 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -135.382 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.722 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -77.282 kcal (6) G-S(sol) free energy of system = (1) + (5) -130.660 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.67 seconds