Wall clock time and date at job start Tue Mar 31 2020 05:47:00 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53008 * 1 3 3 C 1.53002 * 109.47004 * 2 1 4 4 C 1.50705 * 109.46818 * 179.97438 * 3 2 1 5 5 S 1.70613 * 124.51209 * 270.02485 * 4 3 2 6 6 C 1.75831 * 91.56507 * 179.97438 * 5 4 3 7 7 C 1.46461 * 125.46231 * 179.97438 * 6 5 4 8 8 O 1.21749 * 120.00043 * 186.62214 * 7 6 5 9 9 N 1.34773 * 120.00027 * 6.62717 * 7 6 5 10 10 C 1.46493 * 120.00050 * 185.77274 * 9 7 6 11 11 C 1.36881 * 120.00003 * 5.76569 * 9 7 6 12 12 H 1.08008 * 119.99973 * 42.68961 * 11 9 7 13 13 C 1.39007 * 120.00453 * 222.68741 * 11 9 7 14 14 N 1.31396 * 119.99815 * 8.28073 * 13 11 9 15 15 Si 1.86797 * 120.00226 * 188.27737 * 13 11 9 16 16 H 1.48491 * 109.47294 * 90.00274 * 15 13 11 17 17 H 1.48505 * 109.46991 * 210.00233 * 15 13 11 18 18 H 1.48500 * 109.47201 * 329.99807 * 15 13 11 19 19 C 1.36772 * 109.07883 * 0.02562 * 6 5 4 20 20 C 1.33843 * 124.51517 * 90.00079 * 4 3 2 21 21 C 1.50704 * 122.44804 * 359.97438 * 20 4 3 22 22 C 1.53007 * 109.47013 * 84.99882 * 21 20 4 23 23 H 1.09006 * 109.46911 * 59.99817 * 1 2 3 24 24 H 1.08996 * 109.46998 * 179.97438 * 1 2 3 25 25 H 1.09002 * 109.46859 * 300.00148 * 1 2 3 26 26 H 1.08994 * 109.47084 * 240.00141 * 2 1 3 27 27 H 1.08997 * 109.46817 * 119.99589 * 2 1 3 28 28 H 1.08994 * 109.47085 * 60.00142 * 3 2 1 29 29 H 1.08997 * 109.46998 * 299.99479 * 3 2 1 30 30 H 1.09002 * 109.47378 * 86.27722 * 10 9 7 31 31 H 1.08999 * 109.47183 * 206.27611 * 10 9 7 32 32 H 1.09001 * 109.47017 * 326.27751 * 10 9 7 33 33 H 0.97000 * 120.00184 * 180.02562 * 14 13 11 34 34 H 1.07997 * 123.36609 * 180.02562 * 19 6 5 35 35 H 1.09002 * 109.47327 * 205.00159 * 21 20 4 36 36 H 1.09002 * 109.46673 * 325.00338 * 21 20 4 37 37 H 1.08998 * 109.46644 * 180.02562 * 22 21 20 38 38 H 1.08997 * 109.47036 * 299.99919 * 22 21 20 39 39 H 1.08995 * 109.47059 * 60.00304 * 22 21 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 6 2.0401 1.4425 0.0000 4 6 3.5471 1.4425 0.0006 5 16 4.5132 1.4420 1.4069 6 6 5.9891 1.4415 0.4512 7 6 7.3507 1.4415 0.9908 8 8 8.3025 1.5626 0.2413 9 7 7.5501 1.3072 2.3169 10 6 8.9003 1.4335 2.8711 11 6 6.4910 1.0529 3.1459 12 1 5.7383 0.3348 2.8557 13 6 6.3842 1.7188 4.3614 14 7 7.2042 2.7058 4.6441 15 14 5.0749 1.2105 5.5930 16 1 5.6232 0.1670 6.4960 17 1 4.6635 2.3916 6.3937 18 1 3.8972 0.6692 4.8684 19 6 5.6618 1.4422 -0.8767 20 6 4.3060 1.4423 -1.1019 21 6 3.7168 1.4416 -2.4890 22 6 3.4012 2.8784 -2.9098 23 1 -0.3633 0.5139 -0.8900 24 1 -0.3633 -1.0276 -0.0005 25 1 -0.3633 0.5139 0.8900 26 1 1.8934 -0.5138 -0.8899 27 1 1.8933 -0.5138 0.8900 28 1 1.6767 1.9563 0.8899 29 1 1.6768 1.9563 -0.8900 30 1 9.1142 2.4835 3.0712 31 1 8.9666 0.8660 3.7993 32 1 9.6247 1.0452 2.1551 33 1 7.1300 3.1703 5.4924 34 1 6.3955 1.4417 -1.6693 35 1 4.4321 1.0072 -3.1874 36 1 2.8001 0.8518 -2.4940 37 1 2.9747 2.8777 -3.9128 38 1 2.6858 3.3127 -2.2114 39 1 4.3178 3.4681 -2.9047 RHF calculation, no. of doubly occupied orbitals= 50 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000299473086.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:47:00 Heat of formation + Delta-G solvation = -33.214920 kcal Electronic energy + Delta-G solvation = -20171.389546 eV Core-core repulsion = 17204.627717 eV Total energy + Delta-G solvation = -2966.761829 eV No. of doubly occupied orbitals = 50 Molecular weight (most abundant/longest-lived isotopes) = 281.119 amu Computer time = 0.51 seconds Orbital eigenvalues (eV) -38.70075 -37.90053 -34.87922 -34.47908 -32.18277 -31.70228 -29.59586 -27.27291 -25.82679 -24.60231 -23.63203 -21.92243 -21.15877 -19.38914 -18.21710 -17.20550 -16.60302 -15.61767 -14.76576 -14.65945 -14.34555 -14.13880 -13.89045 -13.67051 -13.44959 -13.19470 -12.76150 -12.40839 -12.22281 -11.88631 -11.77537 -11.51296 -11.37226 -11.30532 -11.19861 -11.09736 -10.96562 -10.88441 -10.68660 -10.62571 -10.46325 -10.38075 -9.71198 -9.12698 -8.66997 -7.84222 -7.53856 -7.43791 -6.60140 -4.37937 1.49746 2.56866 2.94917 3.08915 3.10493 3.11174 3.18900 3.90625 4.34425 4.75828 4.88637 5.04715 5.10407 5.19845 5.33640 5.39341 5.59441 5.66680 5.74678 5.86259 5.91395 5.99872 6.03615 6.08447 6.12840 6.25211 6.31039 6.37533 6.39202 6.51378 6.63925 6.79721 6.85632 7.10144 7.15928 7.18271 7.27492 7.73870 8.14005 8.82350 9.33977 9.77882 10.40388 Molecular weight = 281.12amu Principal moments of inertia in cm(-1) A = 0.015992 B = 0.007066 C = 0.005219 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1750.479289 B = 3961.848663 C = 5363.443334 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.151 4.151 2 C -0.119 4.119 3 C -0.041 4.041 4 C -0.282 4.282 5 S 0.282 5.718 6 C -0.218 4.218 7 C 0.535 3.465 8 O -0.600 6.600 9 N -0.439 5.439 10 C 0.115 3.885 11 C -0.346 4.346 12 H 0.101 0.899 13 C 0.061 3.939 14 N -0.843 5.843 15 Si 0.908 3.092 16 H -0.270 1.270 17 H -0.276 1.276 18 H -0.257 1.257 19 C -0.096 4.096 20 C -0.121 4.121 21 C -0.060 4.060 22 C -0.144 4.144 23 H 0.052 0.948 24 H 0.052 0.948 25 H 0.053 0.947 26 H 0.062 0.938 27 H 0.064 0.936 28 H 0.065 0.935 29 H 0.069 0.931 30 H 0.055 0.945 31 H 0.057 0.943 32 H 0.041 0.959 33 H 0.276 0.724 34 H 0.134 0.866 35 H 0.063 0.937 36 H 0.063 0.937 37 H 0.049 0.951 38 H 0.052 0.948 39 H 0.055 0.945 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -10.990 -2.541 -5.213 12.426 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.208 4.208 2 C -0.158 4.158 3 C -0.080 4.080 4 C -0.400 4.400 5 S 0.558 5.442 6 C -0.339 4.339 7 C 0.324 3.676 8 O -0.488 6.488 9 N -0.157 5.157 10 C -0.028 4.028 11 C -0.480 4.480 12 H 0.118 0.882 13 C -0.150 4.150 14 N -0.476 5.476 15 Si 0.732 3.268 16 H -0.196 1.196 17 H -0.202 1.202 18 H -0.181 1.181 19 C -0.129 4.129 20 C -0.133 4.133 21 C -0.100 4.100 22 C -0.202 4.202 23 H 0.071 0.929 24 H 0.071 0.929 25 H 0.072 0.928 26 H 0.081 0.919 27 H 0.083 0.917 28 H 0.084 0.916 29 H 0.088 0.912 30 H 0.073 0.927 31 H 0.076 0.924 32 H 0.060 0.940 33 H 0.087 0.913 34 H 0.152 0.848 35 H 0.081 0.919 36 H 0.082 0.918 37 H 0.068 0.932 38 H 0.071 0.929 39 H 0.074 0.926 Dipole moment (debyes) X Y Z Total from point charges -10.818 -2.310 -3.836 11.708 hybrid contribution -0.215 -0.070 -0.789 0.820 sum -11.033 -2.380 -4.624 12.197 Atomic orbital electron populations 1.21787 0.96075 1.01375 1.01602 1.21540 0.95054 0.96626 1.02531 1.20013 0.89013 0.96871 1.02057 1.25194 1.01038 1.10704 1.03104 1.84425 0.92202 1.64895 1.02671 1.24575 0.97967 1.14338 0.97043 1.17266 0.86399 0.80870 0.83069 1.90652 1.42245 1.57000 1.58864 1.43208 1.07315 1.60730 1.04408 1.21317 0.83250 1.01457 0.96752 1.19442 1.03659 1.24090 1.00771 0.88228 1.25609 0.97244 0.93468 0.98728 1.69903 1.36004 1.17972 1.23687 0.86186 0.81181 0.78860 0.80553 1.19566 1.20153 1.18080 1.20301 0.94958 1.02494 0.95138 1.18318 0.92510 1.07420 0.95087 1.20157 0.99935 0.96918 0.92957 1.21728 1.01615 0.96787 1.00025 0.92935 0.92900 0.92794 0.91887 0.91736 0.91649 0.91210 0.92653 0.92412 0.94022 0.91346 0.84820 0.91862 0.91843 0.93212 0.92857 0.92631 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.50 9.91 37.16 0.37 -1.14 16 2 C -0.12 -1.47 5.92 -26.73 -0.16 -1.63 16 3 C -0.04 -0.56 5.04 -27.88 -0.14 -0.70 16 4 C -0.28 -4.86 5.53 -35.85 -0.20 -5.06 16 5 S 0.28 5.68 18.47 -107.50 -1.99 3.70 16 6 C -0.22 -5.03 6.27 -36.80 -0.23 -5.26 16 7 C 0.53 14.03 7.59 -12.95 -0.10 13.93 16 8 O -0.60 -16.91 16.46 5.15 0.08 -16.83 16 9 N -0.44 -11.35 2.90 -123.77 -0.36 -11.71 16 10 C 0.12 2.80 8.88 59.84 0.53 3.33 16 11 C -0.35 -8.53 6.70 -15.01 -0.10 -8.63 16 12 H 0.10 2.38 5.66 -36.74 -0.21 2.17 16 13 C 0.06 1.47 5.21 -17.45 -0.09 1.38 16 14 N -0.84 -21.36 11.85 55.50 0.66 -20.70 16 15 Si 0.91 18.28 29.56 -169.99 -5.03 13.26 16 16 H -0.27 -5.39 7.11 56.52 0.40 -4.98 16 17 H -0.28 -5.55 7.11 56.52 0.40 -5.14 16 18 H -0.26 -4.94 7.11 56.52 0.40 -4.54 16 19 C -0.10 -1.97 9.79 -40.40 -0.40 -2.36 16 20 C -0.12 -2.12 5.04 -106.45 -0.54 -2.65 16 21 C -0.06 -0.84 5.54 -27.88 -0.15 -1.00 16 22 C -0.14 -1.82 9.83 37.16 0.37 -1.46 16 23 H 0.05 0.48 8.14 -51.93 -0.42 0.06 16 24 H 0.05 0.48 8.14 -51.93 -0.42 0.06 16 25 H 0.05 0.52 8.14 -51.93 -0.42 0.10 16 26 H 0.06 0.78 7.74 -51.93 -0.40 0.38 16 27 H 0.06 0.85 8.14 -51.93 -0.42 0.42 16 28 H 0.06 0.88 8.14 -51.93 -0.42 0.45 16 29 H 0.07 0.88 6.40 -51.93 -0.33 0.55 16 30 H 0.05 1.39 7.64 -51.93 -0.40 0.99 16 31 H 0.06 1.34 7.90 -51.93 -0.41 0.93 16 32 H 0.04 0.97 7.46 -51.93 -0.39 0.58 16 33 H 0.28 6.54 8.31 -40.82 -0.34 6.20 16 34 H 0.13 2.71 8.06 -52.49 -0.42 2.28 16 35 H 0.06 0.85 8.10 -51.93 -0.42 0.43 16 36 H 0.06 0.81 7.06 -51.93 -0.37 0.44 16 37 H 0.05 0.52 8.14 -51.93 -0.42 0.10 16 38 H 0.05 0.67 7.24 -51.93 -0.38 0.30 16 39 H 0.05 0.75 8.14 -51.93 -0.42 0.33 16 LS Contribution 330.37 15.07 4.98 4.98 Total: -1.00 -28.16 330.37 -8.30 -36.46 By element: Atomic # 1 Polarization: 7.91 SS G_CDS: -5.82 Total: 2.09 kcal Atomic # 6 Polarization: -10.41 SS G_CDS: -0.84 Total: -11.25 kcal Atomic # 7 Polarization: -32.71 SS G_CDS: 0.30 Total: -32.41 kcal Atomic # 8 Polarization: -16.91 SS G_CDS: 0.08 Total: -16.83 kcal Atomic # 14 Polarization: 18.28 SS G_CDS: -5.03 Total: 13.26 kcal Atomic # 16 Polarization: 5.68 SS G_CDS: -1.99 Total: 3.70 kcal Total LS contribution 4.98 Total: 4.98 kcal Total: -28.16 -8.30 -36.46 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000299473086.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 3.247 kcal (2) G-P(sol) polarization free energy of solvation -28.159 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -24.912 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.303 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.462 kcal (6) G-S(sol) free energy of system = (1) + (5) -33.215 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.51 seconds