Wall clock time and date at job start Tue Mar 31 2020 05:47:00 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53008 * 1 3 3 C 1.53002 * 109.47004 * 2 1 4 4 C 1.50705 * 109.46818 * 179.97438 * 3 2 1 5 5 S 1.70613 * 124.51209 * 270.02485 * 4 3 2 6 6 C 1.75831 * 91.56507 * 179.97438 * 5 4 3 7 7 C 1.46461 * 125.46231 * 179.97438 * 6 5 4 8 8 O 1.21749 * 120.00043 * 186.62214 * 7 6 5 9 9 N 1.34773 * 120.00027 * 6.62717 * 7 6 5 10 10 C 1.46493 * 120.00050 * 185.77274 * 9 7 6 11 11 C 1.36881 * 120.00003 * 5.76569 * 9 7 6 12 12 H 1.08008 * 119.99973 * 42.68961 * 11 9 7 13 13 C 1.39007 * 120.00453 * 222.68741 * 11 9 7 14 14 N 1.31396 * 119.99815 * 8.28073 * 13 11 9 15 15 Si 1.86797 * 120.00226 * 188.27737 * 13 11 9 16 16 H 1.48491 * 109.47294 * 90.00274 * 15 13 11 17 17 H 1.48505 * 109.46991 * 210.00233 * 15 13 11 18 18 H 1.48500 * 109.47201 * 329.99807 * 15 13 11 19 19 C 1.36772 * 109.07883 * 0.02562 * 6 5 4 20 20 C 1.33843 * 124.51517 * 90.00079 * 4 3 2 21 21 C 1.50704 * 122.44804 * 359.97438 * 20 4 3 22 22 C 1.53007 * 109.47013 * 84.99882 * 21 20 4 23 23 H 1.09006 * 109.46911 * 59.99817 * 1 2 3 24 24 H 1.08996 * 109.46998 * 179.97438 * 1 2 3 25 25 H 1.09002 * 109.46859 * 300.00148 * 1 2 3 26 26 H 1.08994 * 109.47084 * 240.00141 * 2 1 3 27 27 H 1.08997 * 109.46817 * 119.99589 * 2 1 3 28 28 H 1.08994 * 109.47085 * 60.00142 * 3 2 1 29 29 H 1.08997 * 109.46998 * 299.99479 * 3 2 1 30 30 H 1.09002 * 109.47378 * 86.27722 * 10 9 7 31 31 H 1.08999 * 109.47183 * 206.27611 * 10 9 7 32 32 H 1.09001 * 109.47017 * 326.27751 * 10 9 7 33 33 H 0.97000 * 120.00184 * 180.02562 * 14 13 11 34 34 H 1.07997 * 123.36609 * 180.02562 * 19 6 5 35 35 H 1.09002 * 109.47327 * 205.00159 * 21 20 4 36 36 H 1.09002 * 109.46673 * 325.00338 * 21 20 4 37 37 H 1.08998 * 109.46644 * 180.02562 * 22 21 20 38 38 H 1.08997 * 109.47036 * 299.99919 * 22 21 20 39 39 H 1.08995 * 109.47059 * 60.00304 * 22 21 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 6 2.0401 1.4425 0.0000 4 6 3.5471 1.4425 0.0006 5 16 4.5132 1.4420 1.4069 6 6 5.9891 1.4415 0.4512 7 6 7.3507 1.4415 0.9908 8 8 8.3025 1.5626 0.2413 9 7 7.5501 1.3072 2.3169 10 6 8.9003 1.4335 2.8711 11 6 6.4910 1.0529 3.1459 12 1 5.7383 0.3348 2.8557 13 6 6.3842 1.7188 4.3614 14 7 7.2042 2.7058 4.6441 15 14 5.0749 1.2105 5.5930 16 1 5.6232 0.1670 6.4960 17 1 4.6635 2.3916 6.3937 18 1 3.8972 0.6692 4.8684 19 6 5.6618 1.4422 -0.8767 20 6 4.3060 1.4423 -1.1019 21 6 3.7168 1.4416 -2.4890 22 6 3.4012 2.8784 -2.9098 23 1 -0.3633 0.5139 -0.8900 24 1 -0.3633 -1.0276 -0.0005 25 1 -0.3633 0.5139 0.8900 26 1 1.8934 -0.5138 -0.8899 27 1 1.8933 -0.5138 0.8900 28 1 1.6767 1.9563 0.8899 29 1 1.6768 1.9563 -0.8900 30 1 9.1142 2.4835 3.0712 31 1 8.9666 0.8660 3.7993 32 1 9.6247 1.0452 2.1551 33 1 7.1300 3.1703 5.4924 34 1 6.3955 1.4417 -1.6693 35 1 4.4321 1.0072 -3.1874 36 1 2.8001 0.8518 -2.4940 37 1 2.9747 2.8777 -3.9128 38 1 2.6858 3.3127 -2.2114 39 1 4.3178 3.4681 -2.9047 RHF calculation, no. of doubly occupied orbitals= 50 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000299473086.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:47:00 Heat of formation + Delta-G solvation = -47.240732 kcal Electronic energy + Delta-G solvation = -20171.997751 eV Core-core repulsion = 17204.627717 eV Total energy + Delta-G solvation = -2967.370034 eV No. of doubly occupied orbitals = 50 Molecular weight (most abundant/longest-lived isotopes) = 281.119 amu Computer time = 0.42 seconds Orbital eigenvalues (eV) -40.53625 -39.44496 -36.78974 -35.63809 -33.63891 -33.40970 -30.87033 -28.94434 -27.50500 -26.27763 -24.80534 -23.45261 -22.21278 -21.20251 -19.80324 -18.84664 -18.34546 -17.16859 -16.51932 -16.29504 -15.95814 -15.59555 -15.39558 -14.89538 -14.68570 -14.46486 -14.19026 -13.85905 -13.69415 -13.29705 -13.25747 -13.18537 -12.92605 -12.74688 -12.70276 -12.49822 -12.26487 -12.20712 -12.01735 -11.90679 -11.73061 -11.53962 -11.30730 -10.84354 -10.64557 -9.70215 -9.21775 -9.01555 -8.44517 -6.30795 -0.13152 0.95178 1.36410 1.44412 1.54847 1.56206 1.63879 2.21651 2.46079 2.91114 3.02052 3.91579 4.14316 4.15165 4.25057 4.34572 4.37780 4.52343 4.61140 4.70301 4.75500 4.80855 4.83179 4.86996 4.92780 5.04887 5.07472 5.11265 5.11910 5.25008 5.26966 5.31044 5.36886 5.43958 5.52727 5.67050 5.80957 5.83897 6.23818 6.93307 7.37995 7.82813 8.58537 Molecular weight = 281.12amu Principal moments of inertia in cm(-1) A = 0.015992 B = 0.007066 C = 0.005219 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1750.479289 B = 3961.848663 C = 5363.443334 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.147 4.147 2 C -0.118 4.118 3 C -0.043 4.043 4 C -0.253 4.253 5 S 0.274 5.726 6 C -0.270 4.270 7 C 0.518 3.482 8 O -0.637 6.637 9 N -0.450 5.450 10 C 0.124 3.876 11 C -0.363 4.363 12 H 0.107 0.893 13 C 0.025 3.975 14 N -0.879 5.879 15 Si 0.966 3.034 16 H -0.265 1.265 17 H -0.274 1.274 18 H -0.240 1.240 19 C -0.085 4.085 20 C -0.128 4.128 21 C -0.058 4.058 22 C -0.141 4.141 23 H 0.064 0.936 24 H 0.061 0.939 25 H 0.056 0.944 26 H 0.063 0.937 27 H 0.052 0.948 28 H 0.072 0.928 29 H 0.091 0.909 30 H 0.040 0.960 31 H 0.062 0.938 32 H 0.042 0.958 33 H 0.280 0.720 34 H 0.129 0.871 35 H 0.068 0.932 36 H 0.085 0.915 37 H 0.076 0.924 38 H 0.055 0.945 39 H 0.038 0.962 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -14.638 -3.084 -5.893 16.078 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.204 4.204 2 C -0.156 4.156 3 C -0.081 4.081 4 C -0.372 4.372 5 S 0.549 5.451 6 C -0.390 4.390 7 C 0.310 3.690 8 O -0.528 6.528 9 N -0.166 5.166 10 C -0.019 4.019 11 C -0.495 4.495 12 H 0.124 0.876 13 C -0.183 4.183 14 N -0.513 5.513 15 Si 0.786 3.214 16 H -0.190 1.190 17 H -0.199 1.199 18 H -0.163 1.163 19 C -0.120 4.120 20 C -0.140 4.140 21 C -0.097 4.097 22 C -0.199 4.199 23 H 0.083 0.917 24 H 0.080 0.920 25 H 0.075 0.925 26 H 0.082 0.918 27 H 0.071 0.929 28 H 0.091 0.909 29 H 0.110 0.890 30 H 0.058 0.942 31 H 0.081 0.919 32 H 0.061 0.939 33 H 0.090 0.910 34 H 0.147 0.853 35 H 0.086 0.914 36 H 0.103 0.897 37 H 0.095 0.905 38 H 0.074 0.926 39 H 0.058 0.942 Dipole moment (debyes) X Y Z Total from point charges -14.456 -2.864 -4.491 15.406 hybrid contribution 0.860 0.104 -0.705 1.117 sum -13.596 -2.761 -5.196 14.815 Atomic orbital electron populations 1.21749 0.93911 1.02316 1.02413 1.21523 0.96902 0.95101 1.02066 1.20217 0.85949 0.98441 1.03524 1.25480 1.02831 1.07789 1.01141 1.84119 0.91426 1.65505 1.04028 1.24426 0.97600 1.18495 0.98470 1.17806 0.87595 0.80498 0.83127 1.90589 1.43742 1.58858 1.59621 1.43467 1.07993 1.60446 1.04727 1.21202 0.83325 1.00484 0.96906 1.19733 1.03987 1.24705 1.01096 0.87601 1.26406 0.98981 0.92979 0.99894 1.70001 1.37724 1.19135 1.24404 0.85315 0.79153 0.78663 0.78248 1.18957 1.19870 1.16327 1.20554 0.96571 1.00730 0.94156 1.18611 0.91102 1.06869 0.97393 1.20243 1.00725 0.98310 0.90408 1.21714 1.01083 0.95396 1.01708 0.91677 0.91979 0.92467 0.91788 0.92923 0.90891 0.89023 0.94182 0.91879 0.93896 0.91035 0.85330 0.91360 0.89671 0.90480 0.92629 0.94230 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -2.30 9.91 71.98 0.71 -1.59 16 2 C -0.12 -2.47 5.92 30.60 0.18 -2.28 16 3 C -0.04 -1.01 5.04 29.85 0.15 -0.86 16 4 C -0.25 -8.16 5.53 24.69 0.14 -8.02 16 5 S 0.27 10.89 18.47 -56.49 -1.04 9.84 16 6 C -0.27 -12.71 6.27 24.07 0.15 -12.55 16 7 C 0.52 28.40 7.59 86.39 0.66 29.05 16 8 O -0.64 -37.73 16.46 -4.50 -0.07 -37.81 16 9 N -0.45 -24.14 2.90 -663.69 -1.92 -26.06 16 10 C 0.12 6.29 8.88 127.77 1.14 7.43 16 11 C -0.36 -18.24 6.70 84.09 0.56 -17.67 16 12 H 0.11 5.09 5.66 -12.91 -0.07 5.02 16 13 C 0.03 1.22 5.21 84.94 0.44 1.67 16 14 N -0.88 -45.39 11.85 21.67 0.26 -45.13 16 15 Si 0.97 36.71 29.56 68.60 2.03 38.73 16 16 H -0.26 -9.79 7.11 99.48 0.71 -9.09 16 17 H -0.27 -10.23 7.11 99.48 0.71 -9.53 16 18 H -0.24 -8.41 7.11 99.48 0.71 -7.70 16 19 C -0.09 -3.52 9.79 21.74 0.21 -3.31 16 20 C -0.13 -4.26 5.04 -21.05 -0.11 -4.37 16 21 C -0.06 -1.42 5.54 29.85 0.17 -1.26 16 22 C -0.14 -3.11 9.83 71.98 0.71 -2.40 16 23 H 0.06 0.88 8.14 -2.38 -0.02 0.86 16 24 H 0.06 0.88 8.14 -2.39 -0.02 0.86 16 25 H 0.06 0.87 8.14 -2.39 -0.02 0.85 16 26 H 0.06 1.34 7.74 -2.39 -0.02 1.32 16 27 H 0.05 1.23 8.14 -2.39 -0.02 1.21 16 28 H 0.07 1.68 8.14 -2.39 -0.02 1.66 16 29 H 0.09 1.86 6.40 -2.39 -0.02 1.85 16 30 H 0.04 2.11 7.64 -2.39 -0.02 2.10 16 31 H 0.06 3.04 7.90 -2.39 -0.02 3.02 16 32 H 0.04 2.10 7.46 -2.39 -0.02 2.08 16 33 H 0.28 13.44 8.31 -92.71 -0.77 12.67 16 34 H 0.13 5.33 8.06 -2.91 -0.02 5.31 16 35 H 0.07 1.64 8.10 -2.39 -0.02 1.62 16 36 H 0.08 1.76 7.06 -2.39 -0.02 1.75 16 37 H 0.08 1.29 8.14 -2.39 -0.02 1.28 16 38 H 0.05 1.19 7.24 -2.39 -0.02 1.17 16 39 H 0.04 0.99 8.14 -2.39 -0.02 0.97 16 Total: -1.00 -62.66 330.37 5.33 -57.33 By element: Atomic # 1 Polarization: 18.29 SS G_CDS: 0.98 Total: 19.26 kcal Atomic # 6 Polarization: -21.28 SS G_CDS: 5.11 Total: -16.17 kcal Atomic # 7 Polarization: -69.53 SS G_CDS: -1.67 Total: -71.20 kcal Atomic # 8 Polarization: -37.73 SS G_CDS: -0.07 Total: -37.81 kcal Atomic # 14 Polarization: 36.71 SS G_CDS: 2.03 Total: 38.73 kcal Atomic # 16 Polarization: 10.89 SS G_CDS: -1.04 Total: 9.84 kcal Total: -62.66 5.33 -57.33 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000299473086.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 10.090 kcal (2) G-P(sol) polarization free energy of solvation -62.658 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -52.568 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.327 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -57.330 kcal (6) G-S(sol) free energy of system = (1) + (5) -47.241 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.42 seconds