Wall clock time and date at job start Tue Mar 31 2020 05:19:06 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.45204 * 1 3 3 C 1.34234 * 116.99872 * 2 1 4 4 O 1.20829 * 119.99984 * 359.97438 * 3 2 1 5 5 C 1.50704 * 119.99822 * 179.97438 * 3 2 1 6 6 H 1.08993 * 109.47098 * 300.00115 * 5 3 2 7 7 N 1.46901 * 109.46872 * 180.02562 * 5 3 2 8 8 C 1.46895 * 110.99816 * 85.00162 * 7 5 3 9 9 C 1.50706 * 109.47182 * 179.97438 * 8 7 5 10 10 H 1.08000 * 119.99302 * 0.02562 * 9 8 7 11 11 C 1.37871 * 120.00436 * 179.72677 * 9 8 7 12 12 N 1.31515 * 119.99684 * 359.97438 * 11 9 8 13 13 Si 1.86800 * 120.00405 * 180.02562 * 11 9 8 14 14 H 1.48497 * 109.47154 * 89.99418 * 13 11 9 15 15 H 1.48493 * 109.47010 * 209.99942 * 13 11 9 16 16 H 1.48502 * 109.46736 * 329.99638 * 13 11 9 17 17 C 1.50697 * 109.46918 * 60.00021 * 5 3 2 18 18 C 1.38271 * 119.97389 * 80.00060 * 17 5 3 19 19 C 1.38177 * 120.02777 * 179.97438 * 18 17 5 20 20 C 1.38479 * 119.97001 * 359.97438 * 19 18 17 21 21 F 1.35104 * 120.02352 * 179.97438 * 20 19 18 22 22 C 1.38437 * 119.95466 * 0.02562 * 20 19 18 23 23 C 1.50698 * 120.01585 * 179.97438 * 22 20 19 24 24 C 1.38220 * 119.97553 * 259.72120 * 17 5 3 25 25 H 1.09000 * 109.46895 * 179.97438 * 1 2 3 26 26 H 1.08999 * 109.47168 * 300.00186 * 1 2 3 27 27 H 1.09004 * 109.46824 * 59.99929 * 1 2 3 28 28 H 1.00899 * 111.00258 * 321.04393 * 7 5 3 29 29 H 1.09001 * 109.47613 * 60.00104 * 8 7 5 30 30 H 1.08998 * 109.47678 * 300.00000 * 8 7 5 31 31 H 0.97004 * 120.00247 * 180.02562 * 12 11 9 32 32 H 1.08002 * 119.98733 * 359.95201 * 18 17 5 33 33 H 1.07998 * 120.01500 * 179.97438 * 19 18 17 34 34 H 1.08991 * 109.47411 * 90.00005 * 23 22 20 35 35 H 1.09005 * 109.46924 * 209.99872 * 23 22 20 36 36 H 1.09003 * 109.47003 * 329.99136 * 23 22 20 37 37 H 1.07993 * 119.98673 * 0.02562 * 24 17 5 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4520 0.0000 0.0000 3 6 2.0614 1.1960 0.0000 4 8 1.4033 2.2094 -0.0005 5 6 3.5664 1.2749 0.0006 6 1 3.9557 0.7810 0.8908 7 7 3.9829 2.6836 0.0011 8 6 4.0170 3.2220 1.3674 9 6 4.4481 4.6655 1.3280 10 1 4.6736 5.1360 0.3824 11 6 4.5485 5.3873 2.4984 12 7 4.2676 4.8161 3.6492 13 14 5.0821 7.1768 2.4494 14 1 3.8866 8.0461 2.3074 15 1 5.7940 7.5156 3.7078 16 1 5.9901 7.3910 1.2940 17 6 4.1056 0.5915 -1.2295 18 6 4.1056 1.2534 -2.4435 19 6 4.6003 0.6280 -3.5720 20 6 5.0967 -0.6619 -3.4866 21 9 5.5801 -1.2746 -4.5895 22 6 5.0962 -1.3237 -2.2707 23 6 5.6355 -2.7277 -2.1763 24 6 4.6052 -0.6943 -1.1422 25 1 -0.3633 -1.0277 -0.0005 26 1 -0.3633 0.5139 0.8900 27 1 -0.3633 0.5139 -0.8900 28 1 3.3832 3.2382 -0.5912 29 1 4.7242 2.6483 1.9665 30 1 3.0238 3.1510 1.8109 31 1 4.3379 5.3239 4.4727 32 1 3.7185 2.2595 -2.5098 33 1 4.5998 1.1450 -4.5202 34 1 6.7011 -2.6932 -1.9501 35 1 5.1133 -3.2650 -1.3846 36 1 5.4819 -3.2405 -3.1258 37 1 4.6085 -1.2088 -0.1927 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000299480419.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:19:06 Heat of formation + Delta-G solvation = -109.453998 kcal Electronic energy + Delta-G solvation = -21765.202009 eV Core-core repulsion = 18228.921030 eV Total energy + Delta-G solvation = -3536.280980 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 281.121 amu Computer time = 0.40 seconds Orbital eigenvalues (eV) -48.86809 -40.51673 -39.03974 -36.64144 -35.15578 -33.08469 -32.43281 -30.89223 -28.24963 -27.28044 -26.68833 -24.84907 -22.72952 -21.73593 -21.64577 -19.91232 -17.57155 -17.51448 -16.95560 -16.50582 -16.36239 -16.05501 -15.63806 -15.08505 -14.58262 -14.18781 -13.84536 -13.63333 -13.44750 -13.22602 -13.05156 -12.94991 -12.76206 -12.25448 -12.14921 -11.98309 -11.69125 -11.56857 -11.32024 -10.90239 -10.80327 -10.69248 -10.62678 -10.36156 -10.02291 -9.28361 -8.85737 -8.56260 -8.41001 -7.70090 -6.06516 -4.08329 1.15397 1.29261 2.44392 2.93119 3.31890 3.37535 3.41864 3.63266 4.29099 4.40039 4.61176 4.73521 4.81516 4.96479 5.16374 5.20668 5.22938 5.26002 5.30443 5.37604 5.48915 5.51168 5.57380 5.60407 5.76446 6.01010 6.06409 6.23515 6.31501 6.53792 6.59684 6.92795 7.00594 7.32869 7.64298 7.94621 8.02874 8.11061 8.42191 8.98078 9.55983 11.04911 Molecular weight = 281.12amu Principal moments of inertia in cm(-1) A = 0.016739 B = 0.004642 C = 0.004012 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1672.363203 B = 6029.864728 C = 6976.522784 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.033 3.967 2 O -0.360 6.360 3 C 0.435 3.565 4 O -0.495 6.495 5 C 0.135 3.865 6 H 0.121 0.879 7 N -0.650 5.650 8 C 0.189 3.811 9 C -0.513 4.513 10 H 0.064 0.936 11 C 0.057 3.943 12 N -0.897 5.897 13 Si 0.901 3.099 14 H -0.281 1.281 15 H -0.286 1.286 16 H -0.272 1.272 17 C -0.066 4.066 18 C -0.068 4.068 19 C -0.151 4.151 20 C 0.091 3.909 21 F -0.143 7.143 22 C -0.122 4.122 23 C -0.111 4.111 24 C -0.074 4.074 25 H 0.096 0.904 26 H 0.061 0.939 27 H 0.059 0.941 28 H 0.344 0.656 29 H 0.032 0.968 30 H -0.002 1.002 31 H 0.262 0.738 32 H 0.134 0.866 33 H 0.134 0.866 34 H 0.072 0.928 35 H 0.072 0.928 36 H 0.066 0.934 37 H 0.135 0.865 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.318 -14.670 -10.958 18.457 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.061 4.061 2 O -0.276 6.276 3 C 0.275 3.725 4 O -0.381 6.381 5 C 0.022 3.978 6 H 0.139 0.861 7 N -0.282 5.282 8 C 0.063 3.937 9 C -0.552 4.552 10 H 0.082 0.918 11 C -0.144 4.144 12 N -0.536 5.536 13 Si 0.729 3.271 14 H -0.207 1.207 15 H -0.212 1.212 16 H -0.197 1.197 17 C -0.067 4.067 18 C -0.087 4.087 19 C -0.170 4.170 20 C 0.071 3.929 21 F -0.122 7.122 22 C -0.123 4.123 23 C -0.168 4.168 24 C -0.092 4.092 25 H 0.115 0.885 26 H 0.080 0.920 27 H 0.077 0.923 28 H 0.164 0.836 29 H 0.050 0.950 30 H 0.016 0.984 31 H 0.072 0.928 32 H 0.152 0.848 33 H 0.152 0.848 34 H 0.091 0.909 35 H 0.091 0.909 36 H 0.085 0.915 37 H 0.152 0.848 Dipole moment (debyes) X Y Z Total from point charges -1.865 -14.474 -10.800 18.155 hybrid contribution -0.871 1.140 0.176 1.445 sum -2.737 -13.334 -10.624 17.267 Atomic orbital electron populations 1.23202 0.77397 1.03127 1.02380 1.86568 1.22742 1.34146 1.84153 1.25479 0.93536 0.81461 0.72067 1.90696 1.66572 1.36285 1.44521 1.20450 0.84132 0.95420 0.97821 0.86143 1.61205 1.52817 0.97836 1.16317 1.19745 0.96063 0.95606 0.82305 1.21060 1.45594 0.95127 0.93378 0.91811 1.24959 0.95417 0.98742 0.95303 1.69954 1.49046 1.36854 0.97787 0.86447 0.78683 0.84512 0.77484 1.20691 1.21215 1.19702 1.19511 0.99430 0.93839 0.93925 1.20861 0.97155 0.99725 0.90919 1.21065 1.01974 0.93717 1.00227 1.17538 1.00485 0.92175 0.82658 1.91452 1.85948 1.82984 1.51803 1.19811 1.02729 0.97741 0.92055 1.20693 1.01263 0.91827 1.02990 1.20763 0.96791 0.93788 0.97862 0.88537 0.92031 0.92252 0.83568 0.95016 0.98439 0.92840 0.84769 0.84831 0.90889 0.90937 0.91476 0.84757 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.39 10.56 101.05 1.07 1.46 16 2 O -0.36 -5.42 10.48 -39.27 -0.41 -5.83 16 3 C 0.43 7.69 7.07 36.01 0.25 7.94 16 4 O -0.49 -10.27 15.06 -18.75 -0.28 -10.56 16 5 C 0.14 2.33 2.70 -70.02 -0.19 2.14 16 6 H 0.12 2.00 7.65 -51.93 -0.40 1.60 16 7 N -0.65 -13.53 5.55 -110.46 -0.61 -14.15 16 8 C 0.19 4.86 5.13 -4.98 -0.03 4.83 16 9 C -0.51 -14.43 9.32 -34.44 -0.32 -14.75 16 10 H 0.06 1.76 7.81 -52.49 -0.41 1.35 16 11 C 0.06 1.64 5.46 -17.82 -0.10 1.54 16 12 N -0.90 -26.66 13.29 55.43 0.74 -25.93 16 13 Si 0.90 21.70 29.54 -169.99 -5.02 16.68 16 14 H -0.28 -6.70 7.11 56.52 0.40 -6.30 16 15 H -0.29 -6.81 7.11 56.52 0.40 -6.41 16 16 H -0.27 -6.43 7.11 56.52 0.40 -6.03 16 17 C -0.07 -0.98 4.88 -104.62 -0.51 -1.49 16 18 C -0.07 -0.97 9.32 -39.59 -0.37 -1.34 16 19 C -0.15 -1.94 10.03 -39.51 -0.40 -2.33 16 20 C 0.09 1.18 7.24 -39.42 -0.29 0.89 16 21 F -0.14 -1.84 16.48 2.25 0.04 -1.81 16 22 C -0.12 -1.49 5.89 -104.55 -0.62 -2.11 16 23 C -0.11 -1.04 9.83 36.00 0.35 -0.69 16 24 C -0.07 -0.94 9.32 -39.59 -0.37 -1.31 16 25 H 0.10 0.81 8.14 -51.93 -0.42 0.39 16 26 H 0.06 0.76 8.13 -51.93 -0.42 0.34 16 27 H 0.06 0.69 8.13 -51.93 -0.42 0.27 16 28 H 0.34 7.20 7.09 -39.29 -0.28 6.92 16 29 H 0.03 0.85 8.05 -51.93 -0.42 0.44 16 30 H 0.00 -0.06 7.62 -51.93 -0.40 -0.46 16 31 H 0.26 7.35 8.31 -40.82 -0.34 7.01 16 32 H 0.13 1.90 7.25 -52.49 -0.38 1.52 16 33 H 0.13 1.44 8.06 -52.49 -0.42 1.02 16 34 H 0.07 0.63 8.14 -51.93 -0.42 0.21 16 35 H 0.07 0.57 8.09 -51.93 -0.42 0.15 16 36 H 0.07 0.60 7.64 -51.93 -0.40 0.21 16 37 H 0.13 1.46 8.03 -52.49 -0.42 1.03 16 LS Contribution 326.61 15.07 4.92 4.92 Total: -1.00 -31.72 326.61 -6.90 -38.62 By element: Atomic # 1 Polarization: 8.02 SS G_CDS: -4.77 Total: 3.25 kcal Atomic # 6 Polarization: -3.71 SS G_CDS: -1.50 Total: -5.21 kcal Atomic # 7 Polarization: -40.19 SS G_CDS: 0.12 Total: -40.07 kcal Atomic # 8 Polarization: -15.69 SS G_CDS: -0.69 Total: -16.38 kcal Atomic # 9 Polarization: -1.84 SS G_CDS: 0.04 Total: -1.81 kcal Atomic # 14 Polarization: 21.70 SS G_CDS: -5.02 Total: 16.68 kcal Total LS contribution 4.92 Total: 4.92 kcal Total: -31.72 -6.90 -38.62 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000299480419.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -70.836 kcal (2) G-P(sol) polarization free energy of solvation -31.716 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -102.552 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.902 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.618 kcal (6) G-S(sol) free energy of system = (1) + (5) -109.454 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.40 seconds