Wall clock time and date at job start Tue Mar 31 2020 05:19:05 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.45204 * 1 3 3 C 1.34234 * 116.99872 * 2 1 4 4 O 1.20829 * 119.99984 * 359.97438 * 3 2 1 5 5 C 1.50704 * 119.99822 * 179.97438 * 3 2 1 6 6 H 1.08993 * 109.47098 * 300.00115 * 5 3 2 7 7 N 1.46901 * 109.46872 * 180.02562 * 5 3 2 8 8 C 1.46895 * 110.99816 * 85.00162 * 7 5 3 9 9 C 1.50706 * 109.47182 * 179.97438 * 8 7 5 10 10 H 1.08000 * 119.99302 * 0.02562 * 9 8 7 11 11 C 1.37871 * 120.00436 * 179.72677 * 9 8 7 12 12 N 1.31515 * 119.99684 * 359.97438 * 11 9 8 13 13 Si 1.86800 * 120.00405 * 180.02562 * 11 9 8 14 14 H 1.48497 * 109.47154 * 89.99418 * 13 11 9 15 15 H 1.48493 * 109.47010 * 209.99942 * 13 11 9 16 16 H 1.48502 * 109.46736 * 329.99638 * 13 11 9 17 17 C 1.50697 * 109.46918 * 60.00021 * 5 3 2 18 18 C 1.38271 * 119.97389 * 80.00060 * 17 5 3 19 19 C 1.38177 * 120.02777 * 179.97438 * 18 17 5 20 20 C 1.38479 * 119.97001 * 359.97438 * 19 18 17 21 21 F 1.35104 * 120.02352 * 179.97438 * 20 19 18 22 22 C 1.38437 * 119.95466 * 0.02562 * 20 19 18 23 23 C 1.50698 * 120.01585 * 179.97438 * 22 20 19 24 24 C 1.38220 * 119.97553 * 259.72120 * 17 5 3 25 25 H 1.09000 * 109.46895 * 179.97438 * 1 2 3 26 26 H 1.08999 * 109.47168 * 300.00186 * 1 2 3 27 27 H 1.09004 * 109.46824 * 59.99929 * 1 2 3 28 28 H 1.00899 * 111.00258 * 321.04393 * 7 5 3 29 29 H 1.09001 * 109.47613 * 60.00104 * 8 7 5 30 30 H 1.08998 * 109.47678 * 300.00000 * 8 7 5 31 31 H 0.97004 * 120.00247 * 180.02562 * 12 11 9 32 32 H 1.08002 * 119.98733 * 359.95201 * 18 17 5 33 33 H 1.07998 * 120.01500 * 179.97438 * 19 18 17 34 34 H 1.08991 * 109.47411 * 90.00005 * 23 22 20 35 35 H 1.09005 * 109.46924 * 209.99872 * 23 22 20 36 36 H 1.09003 * 109.47003 * 329.99136 * 23 22 20 37 37 H 1.07993 * 119.98673 * 0.02562 * 24 17 5 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4520 0.0000 0.0000 3 6 2.0614 1.1960 0.0000 4 8 1.4033 2.2094 -0.0005 5 6 3.5664 1.2749 0.0006 6 1 3.9557 0.7810 0.8908 7 7 3.9829 2.6836 0.0011 8 6 4.0170 3.2220 1.3674 9 6 4.4481 4.6655 1.3280 10 1 4.6736 5.1360 0.3824 11 6 4.5485 5.3873 2.4984 12 7 4.2676 4.8161 3.6492 13 14 5.0821 7.1768 2.4494 14 1 3.8866 8.0461 2.3074 15 1 5.7940 7.5156 3.7078 16 1 5.9901 7.3910 1.2940 17 6 4.1056 0.5915 -1.2295 18 6 4.1056 1.2534 -2.4435 19 6 4.6003 0.6280 -3.5720 20 6 5.0967 -0.6619 -3.4866 21 9 5.5801 -1.2746 -4.5895 22 6 5.0962 -1.3237 -2.2707 23 6 5.6355 -2.7277 -2.1763 24 6 4.6052 -0.6943 -1.1422 25 1 -0.3633 -1.0277 -0.0005 26 1 -0.3633 0.5139 0.8900 27 1 -0.3633 0.5139 -0.8900 28 1 3.3832 3.2382 -0.5912 29 1 4.7242 2.6483 1.9665 30 1 3.0238 3.1510 1.8109 31 1 4.3379 5.3239 4.4727 32 1 3.7185 2.2595 -2.5098 33 1 4.5998 1.1450 -4.5202 34 1 6.7011 -2.6932 -1.9501 35 1 5.1133 -3.2650 -1.3846 36 1 5.4819 -3.2405 -3.1258 37 1 4.6085 -1.2088 -0.1927 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000299480419.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:19:05 Heat of formation + Delta-G solvation = -128.651836 kcal Electronic energy + Delta-G solvation = -21766.034490 eV Core-core repulsion = 18228.921030 eV Total energy + Delta-G solvation = -3537.113460 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 281.121 amu Computer time = 0.46 seconds Orbital eigenvalues (eV) -49.87573 -41.87978 -40.13616 -38.02431 -36.73705 -34.86320 -33.63108 -32.33594 -29.51141 -28.66704 -27.77579 -26.43548 -24.04579 -23.37269 -22.86676 -21.18959 -19.05819 -18.68430 -18.47344 -17.88380 -17.73661 -17.33850 -16.73114 -16.63545 -16.20737 -15.36067 -15.13625 -15.01399 -14.51699 -14.38971 -14.24186 -14.15671 -14.09585 -13.79151 -13.52651 -13.11137 -13.01105 -12.86482 -12.73760 -12.71758 -12.37262 -12.05156 -11.91880 -11.84801 -11.77744 -11.34980 -10.69603 -9.85780 -9.51964 -9.46558 -8.23781 -6.33964 0.07838 0.28798 1.03804 1.41541 1.42966 1.54592 1.68798 2.39070 2.56830 3.10817 3.28102 3.30459 3.55666 3.73089 3.85010 3.95783 4.07943 4.26946 4.27857 4.31815 4.41161 4.63969 4.67164 4.82718 4.86172 4.93863 5.02906 5.17531 5.19533 5.24331 5.28102 5.34467 5.48702 5.57918 5.91061 5.94842 6.19914 6.42157 6.64358 6.81531 7.35652 8.88194 Molecular weight = 281.12amu Principal moments of inertia in cm(-1) A = 0.016739 B = 0.004642 C = 0.004012 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1672.363203 B = 6029.864728 C = 6976.522784 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.026 3.974 2 O -0.354 6.354 3 C 0.440 3.560 4 O -0.533 6.533 5 C 0.136 3.864 6 H 0.125 0.875 7 N -0.646 5.646 8 C 0.207 3.793 9 C -0.535 4.535 10 H 0.065 0.935 11 C 0.004 3.996 12 N -0.932 5.932 13 Si 0.972 3.028 14 H -0.275 1.275 15 H -0.280 1.280 16 H -0.263 1.263 17 C -0.079 4.079 18 C -0.082 4.082 19 C -0.149 4.149 20 C 0.083 3.917 21 F -0.142 7.142 22 C -0.119 4.119 23 C -0.111 4.111 24 C -0.073 4.073 25 H 0.139 0.861 26 H 0.053 0.947 27 H 0.060 0.940 28 H 0.342 0.658 29 H 0.015 0.985 30 H -0.036 1.036 31 H 0.265 0.735 32 H 0.128 0.872 33 H 0.152 0.848 34 H 0.082 0.918 35 H 0.090 0.910 36 H 0.071 0.929 37 H 0.155 0.845 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.822 -15.699 -11.917 19.794 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.068 4.068 2 O -0.269 6.269 3 C 0.282 3.718 4 O -0.422 6.422 5 C 0.023 3.977 6 H 0.143 0.857 7 N -0.277 5.277 8 C 0.079 3.921 9 C -0.573 4.573 10 H 0.083 0.917 11 C -0.195 4.195 12 N -0.572 5.572 13 Si 0.797 3.203 14 H -0.201 1.201 15 H -0.205 1.205 16 H -0.187 1.187 17 C -0.080 4.080 18 C -0.100 4.100 19 C -0.168 4.168 20 C 0.064 3.936 21 F -0.121 7.121 22 C -0.120 4.120 23 C -0.167 4.167 24 C -0.091 4.091 25 H 0.157 0.843 26 H 0.072 0.928 27 H 0.079 0.921 28 H 0.162 0.838 29 H 0.033 0.967 30 H -0.018 1.018 31 H 0.074 0.926 32 H 0.145 0.855 33 H 0.170 0.830 34 H 0.100 0.900 35 H 0.108 0.892 36 H 0.090 0.910 37 H 0.172 0.828 Dipole moment (debyes) X Y Z Total from point charges -1.371 -15.546 -11.783 19.555 hybrid contribution -1.085 1.314 0.424 1.756 sum -2.456 -14.231 -11.359 18.373 Atomic orbital electron populations 1.23560 0.75275 1.05818 1.02128 1.86534 1.24705 1.32307 1.83367 1.25398 0.93676 0.81653 0.71092 1.90679 1.67376 1.37621 1.46533 1.20434 0.84340 0.93326 0.99589 0.85744 1.61046 1.53558 0.99695 1.13375 1.19337 0.93405 0.94928 0.84402 1.21449 1.45740 0.96446 0.93641 0.91698 1.25898 0.95237 1.03497 0.94830 1.70076 1.49905 1.38753 0.98501 0.85338 0.78456 0.78655 0.77894 1.20107 1.20502 1.18691 1.19361 1.00972 0.94833 0.92825 1.20868 0.98065 0.99730 0.91385 1.21211 1.01228 0.93864 1.00483 1.17710 1.00483 0.92312 0.83076 1.91457 1.85904 1.82912 1.51780 1.20117 1.01596 0.98930 0.91310 1.20784 1.01880 0.90074 1.04012 1.20954 0.96080 0.92986 0.99090 0.84336 0.92820 0.92081 0.83770 0.96743 1.01822 0.92576 0.85456 0.83034 0.89951 0.89159 0.90990 0.82774 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.57 10.56 113.37 1.20 1.77 16 2 O -0.35 -10.34 10.48 -51.45 -0.54 -10.88 16 3 C 0.44 15.79 7.07 71.24 0.50 16.29 16 4 O -0.53 -22.85 15.06 21.96 0.33 -22.52 16 5 C 0.14 4.75 2.70 43.42 0.12 4.86 16 6 H 0.12 4.19 7.65 -2.39 -0.02 4.17 16 7 N -0.65 -27.69 5.55 -503.39 -2.79 -30.49 16 8 C 0.21 11.03 5.13 85.56 0.44 11.47 16 9 C -0.53 -30.67 9.32 25.60 0.24 -30.43 16 10 H 0.06 3.62 7.81 -2.91 -0.02 3.60 16 11 C 0.00 0.22 5.46 84.65 0.46 0.68 16 12 N -0.93 -56.39 13.29 21.45 0.28 -56.10 16 13 Si 0.97 44.65 29.54 68.60 2.03 46.67 16 14 H -0.28 -12.34 7.11 99.48 0.71 -11.64 16 15 H -0.28 -12.45 7.11 99.48 0.71 -11.75 16 16 H -0.26 -11.57 7.11 99.48 0.71 -10.86 16 17 C -0.08 -2.29 4.88 -19.86 -0.10 -2.39 16 18 C -0.08 -2.30 9.32 22.26 0.21 -2.10 16 19 C -0.15 -3.64 10.03 22.31 0.22 -3.41 16 20 C 0.08 2.00 7.24 22.37 0.16 2.16 16 21 F -0.14 -3.35 16.48 44.97 0.74 -2.61 16 22 C -0.12 -2.61 5.89 -19.82 -0.12 -2.73 16 23 C -0.11 -1.74 9.83 71.24 0.70 -1.04 16 24 C -0.07 -1.73 9.32 22.26 0.21 -1.53 16 25 H 0.14 1.93 8.14 -2.39 -0.02 1.91 16 26 H 0.05 1.30 8.13 -2.39 -0.02 1.28 16 27 H 0.06 1.36 8.13 -2.39 -0.02 1.34 16 28 H 0.34 14.87 7.09 -89.69 -0.64 14.24 16 29 H 0.01 0.81 8.05 -2.39 -0.02 0.79 16 30 H -0.04 -2.13 7.62 -2.39 -0.02 -2.15 16 31 H 0.27 15.05 8.31 -92.71 -0.77 14.28 16 32 H 0.13 3.67 7.25 -2.91 -0.02 3.65 16 33 H 0.15 3.03 8.06 -2.91 -0.02 3.01 16 34 H 0.08 1.18 8.14 -2.39 -0.02 1.16 16 35 H 0.09 1.11 8.09 -2.38 -0.02 1.09 16 36 H 0.07 1.08 7.64 -2.39 -0.02 1.06 16 37 H 0.15 2.97 8.03 -2.91 -0.02 2.95 16 Total: -1.00 -68.92 326.61 4.75 -64.17 By element: Atomic # 1 Polarization: 17.69 SS G_CDS: 0.45 Total: 18.15 kcal Atomic # 6 Polarization: -10.63 SS G_CDS: 4.24 Total: -6.38 kcal Atomic # 7 Polarization: -84.08 SS G_CDS: -2.51 Total: -86.59 kcal Atomic # 8 Polarization: -33.19 SS G_CDS: -0.21 Total: -33.40 kcal Atomic # 9 Polarization: -3.35 SS G_CDS: 0.74 Total: -2.61 kcal Atomic # 14 Polarization: 44.65 SS G_CDS: 2.03 Total: 46.67 kcal Total: -68.92 4.75 -64.17 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000299480419.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -64.486 kcal (2) G-P(sol) polarization free energy of solvation -68.916 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -133.402 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.750 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -64.166 kcal (6) G-S(sol) free energy of system = (1) + (5) -128.652 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.46 seconds