Wall clock time and date at job start Tue Mar 31 2020 05:48:00 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 C 1.52994 * 109.47511 * 2 1 4 4 C 1.50700 * 109.47344 * 180.02562 * 3 2 1 5 5 C 1.37473 * 122.44432 * 265.24357 * 4 3 2 6 6 C 1.36653 * 113.29331 * 180.22717 * 5 4 3 7 7 C 1.46586 * 125.45742 * 179.84078 * 6 5 4 8 8 O 1.21697 * 119.99999 * 359.71340 * 7 6 5 9 9 N 1.34777 * 120.00074 * 179.71301 * 7 6 5 10 10 C 1.46497 * 120.00376 * 179.97438 * 9 7 6 11 11 H 1.09002 * 109.46725 * 35.00314 * 10 9 7 12 12 C 1.52997 * 109.47188 * 275.00479 * 10 9 7 13 13 C 1.50697 * 109.47081 * 155.00043 * 10 9 7 14 14 H 1.07999 * 120.00055 * 0.02562 * 13 10 9 15 15 C 1.37878 * 119.99687 * 180.02562 * 13 10 9 16 16 N 1.31511 * 120.00458 * 359.97438 * 15 13 10 17 17 Si 1.86805 * 119.99926 * 180.02562 * 15 13 10 18 18 H 1.48500 * 109.47262 * 0.02562 * 17 15 13 19 19 H 1.48505 * 109.46882 * 119.99668 * 17 15 13 20 20 H 1.48493 * 109.47394 * 239.99732 * 17 15 13 21 21 S 1.75831 * 109.08311 * 359.57280 * 6 5 4 22 22 C 1.33815 * 122.45322 * 84.99856 * 4 3 2 23 23 C 1.50706 * 124.51934 * 359.97438 * 22 4 3 24 24 H 1.09002 * 109.47337 * 60.00110 * 1 2 3 25 25 H 1.08996 * 109.47436 * 180.02562 * 1 2 3 26 26 H 1.08997 * 109.47161 * 300.00279 * 1 2 3 27 27 H 1.08997 * 109.47161 * 239.99721 * 2 1 3 28 28 H 1.08996 * 109.46956 * 120.00125 * 2 1 3 29 29 H 1.08997 * 109.47136 * 59.99706 * 3 2 1 30 30 H 1.09010 * 109.46882 * 299.99965 * 3 2 1 31 31 H 1.07995 * 123.35552 * 0.04162 * 5 4 3 32 32 H 0.97006 * 119.99702 * 0.02562 * 9 7 6 33 33 H 1.09002 * 109.47153 * 299.99573 * 12 10 9 34 34 H 1.09001 * 109.46832 * 179.97438 * 12 10 9 35 35 H 1.09004 * 109.47261 * 59.99745 * 12 10 9 36 36 H 0.96999 * 120.00480 * 179.97438 * 16 15 13 37 37 H 1.08998 * 109.46808 * 179.97438 * 23 22 4 38 38 H 1.08994 * 109.47234 * 300.00607 * 23 22 4 39 39 H 1.08998 * 109.46800 * 60.00764 * 23 22 4 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0401 1.4424 0.0000 4 6 3.5471 1.4424 -0.0006 5 6 4.2851 1.5384 1.1552 6 6 5.6341 1.5253 0.9377 7 6 6.6639 1.6162 1.9769 8 8 6.3414 1.7181 3.1459 9 7 7.9680 1.5869 1.6377 10 6 8.9973 1.6783 2.6761 11 1 8.6536 1.1651 3.5743 12 6 9.2655 3.1493 3.0003 13 6 10.2667 1.0328 2.1834 14 1 10.3033 0.5983 1.1953 15 6 11.3814 0.9969 2.9940 16 7 11.3371 1.5264 4.1970 17 14 12.9553 0.1974 2.3829 18 1 12.7465 -0.3178 1.0059 19 1 14.0495 1.2013 2.3747 20 1 13.3212 -0.9263 3.2822 21 16 5.9367 1.3743 -0.7878 22 6 4.2646 1.3441 -1.1258 23 6 3.6745 1.2228 -2.5072 24 1 -0.3634 0.5138 -0.8900 25 1 -0.3634 -1.0276 0.0005 26 1 -0.3633 0.5139 0.8899 27 1 1.8933 -0.5139 -0.8899 28 1 1.8933 -0.5138 0.8899 29 1 1.6767 1.9563 0.8899 30 1 1.6767 1.9563 -0.8901 31 1 3.8428 1.6193 2.1371 32 1 8.2250 1.5061 0.7058 33 1 9.6091 3.6624 2.1021 34 1 10.0310 3.2172 3.7732 35 1 8.3473 3.6161 3.3567 36 1 12.1212 1.5008 4.7674 37 1 4.4779 1.1593 -3.2411 38 1 3.0597 0.3245 -2.5621 39 1 3.0593 2.0976 -2.7175 RHF calculation, no. of doubly occupied orbitals= 50 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000299565307.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:48:00 Heat of formation + Delta-G solvation = -36.138973 kcal Electronic energy + Delta-G solvation = -19295.128552 eV Core-core repulsion = 16328.239927 eV Total energy + Delta-G solvation = -2966.888626 eV No. of doubly occupied orbitals = 50 Molecular weight (most abundant/longest-lived isotopes) = 281.119 amu Computer time = 0.39 seconds Orbital eigenvalues (eV) -39.27326 -38.28098 -34.85881 -34.22961 -32.46216 -31.91505 -29.30527 -28.30333 -25.71368 -25.24626 -23.47727 -22.07453 -20.82026 -19.63729 -18.65548 -17.71557 -16.63154 -15.68992 -15.22148 -14.88478 -14.65995 -14.58215 -14.06131 -13.92789 -13.48435 -13.24045 -13.00704 -12.76919 -12.43618 -12.24469 -12.05103 -11.86066 -11.66924 -11.41919 -11.26136 -11.08057 -10.95630 -10.82410 -10.73848 -10.61804 -10.31009 -10.24351 -9.25082 -9.05154 -8.57522 -8.50385 -8.32315 -7.92295 -6.12914 -4.22265 0.72057 1.61427 2.02555 2.51331 3.23909 3.31540 3.34562 3.84839 4.03346 4.37458 4.69303 4.77933 4.86176 4.97894 5.07243 5.19528 5.26526 5.35719 5.46058 5.48619 5.58285 5.64518 5.67290 5.75637 5.84995 5.94278 6.11341 6.15150 6.41950 6.53841 6.82615 6.95859 7.13782 7.40732 7.53959 7.68172 7.90076 8.13298 8.60338 8.75695 9.03990 9.44969 10.93240 Molecular weight = 281.12amu Principal moments of inertia in cm(-1) A = 0.030251 B = 0.003639 C = 0.003452 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 925.373538 B = 7692.692425 C = 8109.735607 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.152 4.152 2 C -0.120 4.120 3 C -0.056 4.056 4 C -0.118 4.118 5 C -0.063 4.063 6 C -0.243 4.243 7 C 0.573 3.427 8 O -0.543 6.543 9 N -0.702 5.702 10 C 0.264 3.736 11 H 0.051 0.949 12 C -0.148 4.148 13 C -0.534 4.534 14 H 0.062 0.938 15 C 0.066 3.934 16 N -0.883 5.883 17 Si 0.902 3.098 18 H -0.272 1.272 19 H -0.282 1.282 20 H -0.282 1.282 21 S 0.194 5.806 22 C -0.211 4.211 23 C -0.079 4.079 24 H 0.052 0.948 25 H 0.053 0.947 26 H 0.054 0.946 27 H 0.061 0.939 28 H 0.064 0.936 29 H 0.071 0.929 30 H 0.070 0.930 31 H 0.149 0.851 32 H 0.386 0.614 33 H 0.027 0.973 34 H 0.092 0.908 35 H 0.016 0.984 36 H 0.264 0.736 37 H 0.066 0.934 38 H 0.075 0.925 39 H 0.075 0.925 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -16.996 -0.714 -13.166 21.511 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.209 4.209 2 C -0.157 4.157 3 C -0.096 4.096 4 C -0.131 4.131 5 C -0.096 4.096 6 C -0.364 4.364 7 C 0.357 3.643 8 O -0.423 6.423 9 N -0.349 5.349 10 C 0.163 3.837 11 H 0.069 0.931 12 C -0.206 4.206 13 C -0.573 4.573 14 H 0.080 0.920 15 C -0.137 4.137 16 N -0.520 5.520 17 Si 0.730 3.270 18 H -0.197 1.197 19 H -0.208 1.208 20 H -0.208 1.208 21 S 0.463 5.537 22 C -0.330 4.330 23 C -0.137 4.137 24 H 0.072 0.928 25 H 0.072 0.928 26 H 0.073 0.927 27 H 0.080 0.920 28 H 0.083 0.917 29 H 0.090 0.910 30 H 0.088 0.912 31 H 0.167 0.833 32 H 0.218 0.782 33 H 0.046 0.954 34 H 0.110 0.890 35 H 0.035 0.965 36 H 0.074 0.926 37 H 0.085 0.915 38 H 0.094 0.906 39 H 0.093 0.907 Dipole moment (debyes) X Y Z Total from point charges -15.700 -0.687 -13.048 20.425 hybrid contribution -0.240 -0.344 0.172 0.453 sum -15.940 -1.031 -12.876 20.516 Atomic orbital electron populations 1.21782 0.95805 1.01590 1.01749 1.21494 0.95392 0.96368 1.02493 1.20293 0.89424 0.97214 1.02664 1.18578 0.97118 1.05926 0.91446 1.20560 0.91101 0.98349 0.99580 1.24941 0.98465 1.15989 0.97015 1.17022 0.82344 0.77875 0.87050 1.90778 1.81789 1.51423 1.18334 1.46480 1.05360 1.71419 1.11653 1.18811 0.84199 0.93893 0.86784 0.93090 1.22090 1.00036 0.97218 1.01297 1.21244 0.95798 1.38308 1.01918 0.91975 1.24886 0.98895 0.95153 0.94738 1.69910 1.30019 1.43999 1.08103 0.86379 0.82708 0.79053 0.78890 1.19681 1.20837 1.20833 1.83039 1.02905 1.67998 0.99763 1.23944 0.98640 1.10363 1.00088 1.20307 1.00603 1.02728 0.90056 0.92844 0.92783 0.92662 0.91993 0.91686 0.90996 0.91188 0.83320 0.78154 0.95374 0.88967 0.96539 0.92581 0.91547 0.90648 0.90675 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.08 9.91 37.16 0.37 -0.71 16 2 C -0.12 -1.04 5.92 -26.74 -0.16 -1.20 16 3 C -0.06 -0.54 5.11 -27.89 -0.14 -0.68 16 4 C -0.12 -1.46 5.04 -106.45 -0.54 -1.99 16 5 C -0.06 -0.97 9.78 -40.43 -0.40 -1.37 16 6 C -0.24 -4.21 6.45 -36.79 -0.24 -4.45 16 7 C 0.57 12.49 7.75 -12.89 -0.10 12.39 16 8 O -0.54 -13.75 16.50 5.19 0.09 -13.66 16 9 N -0.70 -15.60 5.06 -56.28 -0.28 -15.89 16 10 C 0.26 6.93 2.56 -69.09 -0.18 6.75 16 11 H 0.05 1.53 7.58 -51.93 -0.39 1.13 16 12 C -0.15 -3.77 9.26 37.16 0.34 -3.42 16 13 C -0.53 -14.41 8.73 -34.44 -0.30 -14.71 16 14 H 0.06 1.61 7.74 -52.49 -0.41 1.20 16 15 C 0.07 1.81 5.30 -17.82 -0.09 1.71 16 16 N -0.88 -25.05 11.32 55.43 0.63 -24.42 16 17 Si 0.90 20.76 29.54 -169.99 -5.02 15.74 16 18 H -0.27 -6.12 7.11 56.52 0.40 -5.72 16 19 H -0.28 -6.44 7.11 56.52 0.40 -6.04 16 20 H -0.28 -6.50 7.11 56.52 0.40 -6.10 16 21 S 0.19 2.62 22.08 -107.50 -2.37 0.24 16 22 C -0.21 -2.47 6.28 -35.86 -0.23 -2.69 16 23 C -0.08 -0.65 9.44 36.01 0.34 -0.31 16 24 H 0.05 0.34 8.14 -51.93 -0.42 -0.08 16 25 H 0.05 0.36 8.14 -51.93 -0.42 -0.06 16 26 H 0.05 0.39 8.14 -51.93 -0.42 -0.04 16 27 H 0.06 0.53 7.40 -51.93 -0.38 0.14 16 28 H 0.06 0.64 8.14 -51.93 -0.42 0.22 16 29 H 0.07 0.67 8.11 -51.93 -0.42 0.25 16 30 H 0.07 0.57 7.45 -51.92 -0.39 0.19 16 31 H 0.15 2.27 8.06 -52.49 -0.42 1.84 16 32 H 0.39 7.60 7.65 -40.82 -0.31 7.29 16 33 H 0.03 0.66 8.14 -51.93 -0.42 0.24 16 34 H 0.09 2.52 6.07 -51.93 -0.32 2.21 16 35 H 0.02 0.39 8.14 -51.93 -0.42 -0.03 16 36 H 0.26 7.07 8.31 -40.82 -0.34 6.73 16 37 H 0.07 0.49 8.11 -51.93 -0.42 0.07 16 38 H 0.07 0.55 7.40 -51.93 -0.38 0.16 16 39 H 0.07 0.54 7.92 -51.93 -0.41 0.13 16 LS Contribution 338.00 15.07 5.09 5.09 Total: -1.00 -30.73 338.00 -9.12 -39.85 By element: Atomic # 1 Polarization: 9.65 SS G_CDS: -5.93 Total: 3.72 kcal Atomic # 6 Polarization: -9.37 SS G_CDS: -1.31 Total: -10.68 kcal Atomic # 7 Polarization: -40.65 SS G_CDS: 0.34 Total: -40.31 kcal Atomic # 8 Polarization: -13.75 SS G_CDS: 0.09 Total: -13.66 kcal Atomic # 14 Polarization: 20.76 SS G_CDS: -5.02 Total: 15.74 kcal Atomic # 16 Polarization: 2.62 SS G_CDS: -2.37 Total: 0.24 kcal Total LS contribution 5.09 Total: 5.09 kcal Total: -30.73 -9.12 -39.85 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000299565307.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 3.711 kcal (2) G-P(sol) polarization free energy of solvation -30.732 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -27.021 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.118 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.850 kcal (6) G-S(sol) free energy of system = (1) + (5) -36.139 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.39 seconds