Wall clock time and date at job start Tue Mar 31 2020 05:48:00 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 C 1.52994 * 109.47511 * 2 1 4 4 C 1.50700 * 109.47344 * 180.02562 * 3 2 1 5 5 C 1.37473 * 122.44432 * 265.24357 * 4 3 2 6 6 C 1.36653 * 113.29331 * 180.22717 * 5 4 3 7 7 C 1.46586 * 125.45742 * 179.84078 * 6 5 4 8 8 O 1.21697 * 119.99999 * 359.71340 * 7 6 5 9 9 N 1.34777 * 120.00074 * 179.71301 * 7 6 5 10 10 C 1.46497 * 120.00376 * 179.97438 * 9 7 6 11 11 H 1.09002 * 109.46725 * 35.00314 * 10 9 7 12 12 C 1.52997 * 109.47188 * 275.00479 * 10 9 7 13 13 C 1.50697 * 109.47081 * 155.00043 * 10 9 7 14 14 H 1.07999 * 120.00055 * 0.02562 * 13 10 9 15 15 C 1.37878 * 119.99687 * 180.02562 * 13 10 9 16 16 N 1.31511 * 120.00458 * 359.97438 * 15 13 10 17 17 Si 1.86805 * 119.99926 * 180.02562 * 15 13 10 18 18 H 1.48500 * 109.47262 * 0.02562 * 17 15 13 19 19 H 1.48505 * 109.46882 * 119.99668 * 17 15 13 20 20 H 1.48493 * 109.47394 * 239.99732 * 17 15 13 21 21 S 1.75831 * 109.08311 * 359.57280 * 6 5 4 22 22 C 1.33815 * 122.45322 * 84.99856 * 4 3 2 23 23 C 1.50706 * 124.51934 * 359.97438 * 22 4 3 24 24 H 1.09002 * 109.47337 * 60.00110 * 1 2 3 25 25 H 1.08996 * 109.47436 * 180.02562 * 1 2 3 26 26 H 1.08997 * 109.47161 * 300.00279 * 1 2 3 27 27 H 1.08997 * 109.47161 * 239.99721 * 2 1 3 28 28 H 1.08996 * 109.46956 * 120.00125 * 2 1 3 29 29 H 1.08997 * 109.47136 * 59.99706 * 3 2 1 30 30 H 1.09010 * 109.46882 * 299.99965 * 3 2 1 31 31 H 1.07995 * 123.35552 * 0.04162 * 5 4 3 32 32 H 0.97006 * 119.99702 * 0.02562 * 9 7 6 33 33 H 1.09002 * 109.47153 * 299.99573 * 12 10 9 34 34 H 1.09001 * 109.46832 * 179.97438 * 12 10 9 35 35 H 1.09004 * 109.47261 * 59.99745 * 12 10 9 36 36 H 0.96999 * 120.00480 * 179.97438 * 16 15 13 37 37 H 1.08998 * 109.46808 * 179.97438 * 23 22 4 38 38 H 1.08994 * 109.47234 * 300.00607 * 23 22 4 39 39 H 1.08998 * 109.46800 * 60.00764 * 23 22 4 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0401 1.4424 0.0000 4 6 3.5471 1.4424 -0.0006 5 6 4.2851 1.5384 1.1552 6 6 5.6341 1.5253 0.9377 7 6 6.6639 1.6162 1.9769 8 8 6.3414 1.7181 3.1459 9 7 7.9680 1.5869 1.6377 10 6 8.9973 1.6783 2.6761 11 1 8.6536 1.1651 3.5743 12 6 9.2655 3.1493 3.0003 13 6 10.2667 1.0328 2.1834 14 1 10.3033 0.5983 1.1953 15 6 11.3814 0.9969 2.9940 16 7 11.3371 1.5264 4.1970 17 14 12.9553 0.1974 2.3829 18 1 12.7465 -0.3178 1.0059 19 1 14.0495 1.2013 2.3747 20 1 13.3212 -0.9263 3.2822 21 16 5.9367 1.3743 -0.7878 22 6 4.2646 1.3441 -1.1258 23 6 3.6745 1.2228 -2.5072 24 1 -0.3634 0.5138 -0.8900 25 1 -0.3634 -1.0276 0.0005 26 1 -0.3633 0.5139 0.8899 27 1 1.8933 -0.5139 -0.8899 28 1 1.8933 -0.5138 0.8899 29 1 1.6767 1.9563 0.8899 30 1 1.6767 1.9563 -0.8901 31 1 3.8428 1.6193 2.1371 32 1 8.2250 1.5061 0.7058 33 1 9.6091 3.6624 2.1021 34 1 10.0310 3.2172 3.7732 35 1 8.3473 3.6161 3.3567 36 1 12.1212 1.5008 4.7674 37 1 4.4779 1.1593 -3.2411 38 1 3.0597 0.3245 -2.5621 39 1 3.0593 2.0976 -2.7175 RHF calculation, no. of doubly occupied orbitals= 50 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000299565307.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:48:00 Heat of formation + Delta-G solvation = -54.191895 kcal Electronic energy + Delta-G solvation = -19295.911386 eV Core-core repulsion = 16328.239927 eV Total energy + Delta-G solvation = -2967.671459 eV No. of doubly occupied orbitals = 50 Molecular weight (most abundant/longest-lived isotopes) = 281.119 amu Computer time = 0.44 seconds Orbital eigenvalues (eV) -40.78477 -39.56116 -36.79442 -35.07139 -34.41261 -32.95875 -31.09453 -29.27370 -27.40267 -26.71387 -24.69360 -23.14503 -22.23647 -21.35938 -19.90530 -19.08739 -18.20626 -17.34700 -16.89442 -16.32797 -16.04273 -15.65012 -15.42397 -15.03691 -14.67770 -14.48519 -14.31479 -13.87024 -13.78145 -13.64564 -13.06118 -13.02621 -12.88430 -12.83239 -12.72174 -12.67793 -12.32884 -12.32034 -12.13521 -11.96104 -11.64771 -11.43021 -11.15525 -11.03940 -10.64705 -9.97412 -9.58014 -9.31743 -8.20838 -6.39215 -0.47310 0.48492 0.93010 1.36916 1.43820 1.44173 1.57058 2.22927 2.29749 2.51919 3.09594 3.83777 3.86463 4.08858 4.12573 4.29581 4.33377 4.56441 4.66934 4.68176 4.75319 4.78472 4.86244 4.93250 4.99075 5.02897 5.05902 5.11818 5.21101 5.24310 5.36212 5.45700 5.51701 5.52061 5.58145 5.61644 5.82843 6.03239 6.66073 6.79316 7.23139 7.38647 8.86147 Molecular weight = 281.12amu Principal moments of inertia in cm(-1) A = 0.030251 B = 0.003639 C = 0.003452 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 925.373538 B = 7692.692425 C = 8109.735607 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.149 4.149 2 C -0.118 4.118 3 C -0.053 4.053 4 C -0.131 4.131 5 C -0.052 4.052 6 C -0.298 4.298 7 C 0.571 3.429 8 O -0.593 6.593 9 N -0.700 5.700 10 C 0.270 3.730 11 H 0.001 0.999 12 C -0.134 4.134 13 C -0.550 4.550 14 H 0.073 0.927 15 C 0.015 3.985 16 N -0.917 5.917 17 Si 0.976 3.024 18 H -0.259 1.259 19 H -0.276 1.276 20 H -0.282 1.282 21 S 0.223 5.777 22 C -0.184 4.184 23 C -0.083 4.083 24 H 0.066 0.934 25 H 0.057 0.943 26 H 0.052 0.948 27 H 0.068 0.932 28 H 0.045 0.955 29 H 0.070 0.930 30 H 0.093 0.907 31 H 0.138 0.862 32 H 0.399 0.601 33 H 0.042 0.958 34 H 0.072 0.928 35 H 0.011 0.989 36 H 0.267 0.733 37 H 0.078 0.922 38 H 0.094 0.906 39 H 0.096 0.904 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -17.980 -1.188 -16.723 24.584 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.206 4.206 2 C -0.156 4.156 3 C -0.092 4.092 4 C -0.143 4.143 5 C -0.086 4.086 6 C -0.418 4.418 7 C 0.359 3.641 8 O -0.477 6.477 9 N -0.348 5.348 10 C 0.168 3.832 11 H 0.019 0.981 12 C -0.193 4.193 13 C -0.588 4.588 14 H 0.091 0.909 15 C -0.185 4.185 16 N -0.555 5.555 17 Si 0.800 3.200 18 H -0.183 1.183 19 H -0.202 1.202 20 H -0.208 1.208 21 S 0.492 5.508 22 C -0.304 4.304 23 C -0.141 4.141 24 H 0.085 0.915 25 H 0.076 0.924 26 H 0.072 0.928 27 H 0.087 0.913 28 H 0.064 0.936 29 H 0.088 0.912 30 H 0.111 0.889 31 H 0.156 0.844 32 H 0.234 0.766 33 H 0.061 0.939 34 H 0.090 0.910 35 H 0.030 0.970 36 H 0.076 0.924 37 H 0.097 0.903 38 H 0.112 0.888 39 H 0.115 0.885 Dipole moment (debyes) X Y Z Total from point charges -16.695 -1.162 -16.649 23.606 hybrid contribution -0.063 -0.201 1.221 1.239 sum -16.758 -1.362 -15.428 22.819 Atomic orbital electron populations 1.21758 0.94451 1.02070 1.02358 1.21475 0.96540 0.95656 1.01909 1.20356 0.87124 0.97960 1.03756 1.18749 0.98705 1.06467 0.90374 1.20756 0.90798 0.96559 1.00491 1.24457 0.97749 1.21044 0.98507 1.17585 0.82741 0.76242 0.87531 1.90729 1.82530 1.53579 1.20830 1.46211 1.05161 1.71922 1.11496 1.18443 0.85057 0.93558 0.86188 0.98073 1.21915 0.99101 0.97137 1.01164 1.21535 0.96092 1.38701 1.02499 0.90910 1.25831 1.02425 0.95500 0.94736 1.70054 1.31115 1.44931 1.09358 0.85238 0.78097 0.77916 0.78741 1.18303 1.20164 1.20795 1.82852 1.04375 1.67417 0.96125 1.24527 0.97511 1.06632 1.01773 1.20545 1.01460 1.04535 0.87534 0.91466 0.92419 0.92839 0.91343 0.93564 0.91152 0.88887 0.84417 0.76579 0.93930 0.90980 0.96984 0.92370 0.90280 0.88769 0.88530 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.74 9.91 71.98 0.71 -1.02 16 2 C -0.12 -1.78 5.92 30.59 0.18 -1.60 16 3 C -0.05 -0.86 5.11 29.85 0.15 -0.71 16 4 C -0.13 -2.99 5.04 -21.05 -0.11 -3.10 16 5 C -0.05 -1.60 9.78 21.72 0.21 -1.39 16 6 C -0.30 -10.48 6.45 24.08 0.16 -10.32 16 7 C 0.57 26.16 7.75 86.42 0.67 26.83 16 8 O -0.59 -32.13 16.50 -4.34 -0.07 -32.20 16 9 N -0.70 -32.23 5.06 -450.18 -2.28 -34.51 16 10 C 0.27 14.81 2.56 44.24 0.11 14.92 16 11 H 0.00 0.09 7.58 -2.39 -0.02 0.07 16 12 C -0.13 -7.13 9.26 71.98 0.67 -6.46 16 13 C -0.55 -30.10 8.73 25.60 0.22 -29.88 16 14 H 0.07 3.73 7.74 -2.91 -0.02 3.71 16 15 C 0.02 0.84 5.30 84.66 0.45 1.29 16 16 N -0.92 -53.35 11.32 21.45 0.24 -53.10 16 17 Si 0.98 42.46 29.54 68.60 2.03 44.48 16 18 H -0.26 -10.65 7.11 99.48 0.71 -9.94 16 19 H -0.28 -11.68 7.11 99.48 0.71 -10.97 16 20 H -0.28 -12.20 7.11 99.48 0.71 -11.49 16 21 S 0.22 5.64 22.08 -56.49 -1.25 4.39 16 22 C -0.18 -3.75 6.28 24.68 0.15 -3.59 16 23 C -0.08 -0.96 9.44 71.24 0.67 -0.29 16 24 H 0.07 0.61 8.14 -2.39 -0.02 0.59 16 25 H 0.06 0.64 8.14 -2.39 -0.02 0.62 16 26 H 0.05 0.64 8.14 -2.39 -0.02 0.62 16 27 H 0.07 0.94 7.40 -2.39 -0.02 0.92 16 28 H 0.05 0.86 8.14 -2.39 -0.02 0.84 16 29 H 0.07 1.18 8.11 -2.39 -0.02 1.16 16 30 H 0.09 1.12 7.45 -2.38 -0.02 1.10 16 31 H 0.14 4.43 8.06 -2.91 -0.02 4.40 16 32 H 0.40 15.91 7.65 -92.70 -0.71 15.20 16 33 H 0.04 2.06 8.14 -2.39 -0.02 2.04 16 34 H 0.07 4.11 6.07 -2.39 -0.01 4.10 16 35 H 0.01 0.59 8.14 -2.38 -0.02 0.57 16 36 H 0.27 14.58 8.31 -92.71 -0.77 13.81 16 37 H 0.08 0.79 8.11 -2.39 -0.02 0.77 16 38 H 0.09 0.86 7.40 -2.39 -0.02 0.85 16 39 H 0.10 0.84 7.92 -2.39 -0.02 0.82 16 Total: -1.00 -69.71 338.00 3.26 -66.45 By element: Atomic # 1 Polarization: 19.47 SS G_CDS: 0.33 Total: 19.81 kcal Atomic # 6 Polarization: -19.58 SS G_CDS: 4.26 Total: -15.32 kcal Atomic # 7 Polarization: -85.58 SS G_CDS: -2.04 Total: -87.62 kcal Atomic # 8 Polarization: -32.13 SS G_CDS: -0.07 Total: -32.20 kcal Atomic # 14 Polarization: 42.46 SS G_CDS: 2.03 Total: 44.48 kcal Atomic # 16 Polarization: 5.64 SS G_CDS: -1.25 Total: 4.39 kcal Total: -69.71 3.26 -66.45 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000299565307.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 12.258 kcal (2) G-P(sol) polarization free energy of solvation -69.713 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -57.455 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.263 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -66.450 kcal (6) G-S(sol) free energy of system = (1) + (5) -54.192 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.44 seconds