Wall clock time and date at job start Tue Mar 31 2020 05:48:03 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 C 1.53002 * 109.47306 * 2 1 4 4 C 1.50698 * 109.47387 * 179.97438 * 3 2 1 5 5 C 1.37472 * 122.44862 * 265.02715 * 4 3 2 6 6 C 1.36655 * 113.29291 * 179.97438 * 5 4 3 7 7 C 1.46585 * 125.45448 * 179.97438 * 6 5 4 8 8 O 1.21706 * 120.00016 * 359.97438 * 7 6 5 9 9 N 1.34770 * 119.99775 * 179.97438 * 7 6 5 10 10 C 1.46505 * 120.00131 * 179.97438 * 9 7 6 11 11 H 1.09000 * 109.46611 * 325.00580 * 10 9 7 12 12 C 1.53005 * 109.46856 * 84.99813 * 10 9 7 13 13 C 1.50691 * 109.47595 * 205.00201 * 10 9 7 14 14 H 1.08009 * 120.00011 * 359.97438 * 13 10 9 15 15 C 1.37875 * 120.00649 * 179.97438 * 13 10 9 16 16 N 1.31508 * 120.00769 * 179.97438 * 15 13 10 17 17 Si 1.86804 * 119.99622 * 0.02562 * 15 13 10 18 18 H 1.48502 * 109.47210 * 89.99831 * 17 15 13 19 19 H 1.48495 * 109.47479 * 210.00058 * 17 15 13 20 20 H 1.48503 * 109.47110 * 329.99816 * 17 15 13 21 21 S 1.75827 * 109.08712 * 359.97438 * 6 5 4 22 22 C 1.33822 * 122.44920 * 84.99719 * 4 3 2 23 23 C 1.50698 * 124.52117 * 0.04672 * 22 4 3 24 24 H 1.08997 * 109.46526 * 60.00375 * 1 2 3 25 25 H 1.08998 * 109.47086 * 180.02562 * 1 2 3 26 26 H 1.08995 * 109.47037 * 300.00210 * 1 2 3 27 27 H 1.08999 * 109.47505 * 239.99827 * 2 1 3 28 28 H 1.09000 * 109.47037 * 119.99669 * 2 1 3 29 29 H 1.08999 * 109.46980 * 59.99506 * 3 2 1 30 30 H 1.09000 * 109.46802 * 299.99813 * 3 2 1 31 31 H 1.07998 * 123.35380 * 0.24060 * 5 4 3 32 32 H 0.97002 * 120.00483 * 0.02562 * 9 7 6 33 33 H 1.09000 * 109.46884 * 60.00935 * 12 10 9 34 34 H 1.09000 * 109.46873 * 179.97438 * 12 10 9 35 35 H 1.08996 * 109.47123 * 300.00108 * 12 10 9 36 36 H 0.96994 * 120.00680 * 179.97438 * 16 15 13 37 37 H 1.09004 * 109.47210 * 179.97438 * 23 22 4 38 38 H 1.09006 * 109.47355 * 299.99774 * 23 22 4 39 39 H 1.09000 * 109.47152 * 59.99821 * 23 22 4 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0401 1.4425 0.0000 4 6 3.5471 1.4425 0.0006 5 6 4.2842 1.5433 1.1567 6 6 5.6334 1.5238 0.9406 7 6 6.6624 1.6149 1.9806 8 8 6.3389 1.7181 3.1494 9 7 7.9666 1.5842 1.6426 10 6 8.9951 1.6757 2.6819 11 1 8.6509 2.3380 3.4763 12 6 9.2628 0.2840 3.2584 13 6 10.2651 2.2250 2.0850 14 1 10.3026 2.4800 1.0361 15 6 11.3793 2.4020 2.8776 16 7 12.4877 2.8809 2.3566 17 14 11.3147 1.9603 4.6916 18 1 11.7188 0.5426 4.8705 19 1 12.2423 2.8388 5.4484 20 1 9.9313 2.1483 5.1979 21 16 5.9374 1.3722 -0.7845 22 6 4.2656 1.3439 -1.1240 23 6 3.6766 1.2237 -2.5059 24 1 -0.3632 0.5138 -0.8900 25 1 -0.3633 -1.0276 0.0005 26 1 -0.3633 0.5138 0.8899 27 1 1.8934 -0.5138 -0.8899 28 1 1.8933 -0.5138 0.8900 29 1 1.6767 1.9563 0.8899 30 1 1.6768 1.9563 -0.8900 31 1 3.8411 1.6250 2.1382 32 1 8.2245 1.5023 0.7111 33 1 9.6070 -0.3783 2.4641 34 1 10.0283 0.3520 4.0314 35 1 8.3442 -0.1132 3.6902 36 1 13.2714 3.0057 2.9144 37 1 4.4805 1.1596 -3.2393 38 1 3.0610 0.3259 -2.5618 39 1 3.0622 2.0992 -2.7164 RHF calculation, no. of doubly occupied orbitals= 50 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000299565309.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:48:03 Heat of formation + Delta-G solvation = -27.723179 kcal Electronic energy + Delta-G solvation = -19358.994668 eV Core-core repulsion = 16392.470979 eV Total energy + Delta-G solvation = -2966.523689 eV No. of doubly occupied orbitals = 50 Molecular weight (most abundant/longest-lived isotopes) = 281.119 amu Computer time = 0.38 seconds Orbital eigenvalues (eV) -39.39883 -38.41786 -35.07014 -34.28830 -32.48210 -31.99350 -30.06021 -28.50293 -25.85920 -25.17257 -23.57999 -22.14666 -20.89146 -19.80216 -18.71720 -17.85094 -16.68795 -16.05334 -15.36670 -14.93973 -14.86903 -14.62389 -14.09875 -14.00476 -13.53595 -13.28778 -13.08915 -12.95634 -12.80367 -12.27764 -12.20603 -12.07041 -11.93098 -11.81464 -11.45640 -11.33538 -11.20182 -10.86677 -10.81457 -10.66056 -10.19350 -9.75294 -9.33698 -9.24783 -8.77393 -8.58231 -8.39350 -8.14778 -6.21248 -4.24167 0.64822 1.55561 1.96821 2.44183 3.23637 3.35647 3.40417 3.69248 3.87718 4.31606 4.64999 4.73005 4.81919 4.93751 5.03598 5.13450 5.22019 5.31905 5.37727 5.42136 5.51948 5.60577 5.63679 5.71764 5.80806 5.89830 6.03488 6.10704 6.29695 6.34550 6.39145 6.48093 6.54591 6.84497 7.16469 7.23920 7.49003 8.11017 8.47622 8.73357 8.84617 9.38965 10.90872 Molecular weight = 281.12amu Principal moments of inertia in cm(-1) A = 0.033396 B = 0.003793 C = 0.003512 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 838.233937 B = 7379.522463 C = 7971.493593 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.152 4.152 2 C -0.119 4.119 3 C -0.057 4.057 4 C -0.119 4.119 5 C -0.060 4.060 6 C -0.249 4.249 7 C 0.577 3.423 8 O -0.545 6.545 9 N -0.695 5.695 10 C 0.237 3.763 11 H 0.051 0.949 12 C -0.162 4.162 13 C -0.536 4.536 14 H 0.081 0.919 15 C 0.079 3.921 16 N -0.892 5.892 17 Si 0.885 3.115 18 H -0.276 1.276 19 H -0.294 1.294 20 H -0.261 1.261 21 S 0.201 5.799 22 C -0.208 4.208 23 C -0.080 4.080 24 H 0.053 0.947 25 H 0.053 0.947 26 H 0.054 0.946 27 H 0.061 0.939 28 H 0.064 0.936 29 H 0.071 0.929 30 H 0.070 0.930 31 H 0.149 0.851 32 H 0.392 0.608 33 H 0.054 0.946 34 H 0.049 0.951 35 H 0.037 0.963 36 H 0.268 0.732 37 H 0.066 0.934 38 H 0.075 0.925 39 H 0.076 0.924 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -20.333 -5.150 -9.307 22.948 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.209 4.209 2 C -0.157 4.157 3 C -0.096 4.096 4 C -0.132 4.132 5 C -0.092 4.092 6 C -0.369 4.369 7 C 0.361 3.639 8 O -0.425 6.425 9 N -0.343 5.343 10 C 0.134 3.866 11 H 0.069 0.931 12 C -0.220 4.220 13 C -0.574 4.574 14 H 0.099 0.901 15 C -0.124 4.124 16 N -0.528 5.528 17 Si 0.715 3.285 18 H -0.202 1.202 19 H -0.221 1.221 20 H -0.186 1.186 21 S 0.470 5.530 22 C -0.328 4.328 23 C -0.138 4.138 24 H 0.072 0.928 25 H 0.072 0.928 26 H 0.073 0.927 27 H 0.080 0.920 28 H 0.083 0.917 29 H 0.090 0.910 30 H 0.089 0.911 31 H 0.167 0.833 32 H 0.226 0.774 33 H 0.073 0.927 34 H 0.067 0.933 35 H 0.056 0.944 36 H 0.078 0.922 37 H 0.085 0.915 38 H 0.094 0.906 39 H 0.094 0.906 Dipole moment (debyes) X Y Z Total from point charges -18.962 -5.093 -9.338 21.742 hybrid contribution -0.939 -0.187 1.364 1.666 sum -19.901 -5.280 -7.975 22.080 Atomic orbital electron populations 1.21784 0.95785 1.01598 1.01781 1.21496 0.95419 0.96354 1.02452 1.20296 0.89378 0.97220 1.02725 1.18576 0.97158 1.06064 0.91426 1.20556 0.91038 0.98046 0.99605 1.24811 0.98300 1.16710 0.97119 1.17024 0.82238 0.77493 0.87123 1.90776 1.81820 1.51442 1.18461 1.46123 1.04915 1.71733 1.11498 1.19157 0.86527 0.93349 0.87555 0.93102 1.22459 0.99409 0.99800 1.00343 1.21024 0.93880 1.44195 0.98331 0.90144 1.24816 0.94938 0.94096 0.98592 1.69859 1.02137 1.44362 1.36478 0.86879 0.78563 0.77826 0.85273 1.20231 1.22091 1.18593 1.83116 1.02789 1.67676 0.99397 1.23984 0.98682 1.09960 1.00144 1.20323 1.00680 1.02791 0.90003 0.92805 0.92780 0.92664 0.91977 0.91741 0.90994 0.91123 0.83315 0.77391 0.92722 0.93285 0.94424 0.92237 0.91458 0.90601 0.90585 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.02 9.91 37.16 0.37 -0.65 16 2 C -0.12 -0.98 5.92 -26.73 -0.16 -1.14 16 3 C -0.06 -0.51 5.11 -27.88 -0.14 -0.65 16 4 C -0.12 -1.41 5.04 -106.45 -0.54 -1.95 16 5 C -0.06 -0.87 9.78 -40.43 -0.40 -1.27 16 6 C -0.25 -4.11 6.45 -36.79 -0.24 -4.34 16 7 C 0.58 11.90 7.75 -12.90 -0.10 11.80 16 8 O -0.54 -12.95 16.50 5.18 0.09 -12.86 16 9 N -0.70 -14.75 5.06 -56.27 -0.29 -15.04 16 10 C 0.24 5.83 2.15 -69.08 -0.15 5.68 16 11 H 0.05 1.37 6.63 -51.93 -0.34 1.02 16 12 C -0.16 -3.71 8.96 37.16 0.33 -3.38 16 13 C -0.54 -14.74 9.31 -34.45 -0.32 -15.06 16 14 H 0.08 2.32 7.98 -52.48 -0.42 1.90 16 15 C 0.08 2.25 5.45 -17.82 -0.10 2.15 16 16 N -0.89 -26.53 13.96 55.43 0.77 -25.76 16 17 Si 0.89 21.92 24.37 -169.99 -4.14 17.77 16 18 H -0.28 -6.59 6.87 56.52 0.39 -6.20 16 19 H -0.29 -7.22 7.11 56.52 0.40 -6.82 16 20 H -0.26 -6.44 6.53 56.52 0.37 -6.07 16 21 S 0.20 2.62 22.08 -107.50 -2.37 0.25 16 22 C -0.21 -2.34 6.28 -35.86 -0.23 -2.57 16 23 C -0.08 -0.63 9.44 36.00 0.34 -0.29 16 24 H 0.05 0.32 8.14 -51.93 -0.42 -0.10 16 25 H 0.05 0.34 8.14 -51.93 -0.42 -0.08 16 26 H 0.05 0.36 8.14 -51.93 -0.42 -0.06 16 27 H 0.06 0.50 7.41 -51.93 -0.38 0.11 16 28 H 0.06 0.59 8.14 -51.93 -0.42 0.17 16 29 H 0.07 0.63 8.10 -51.93 -0.42 0.21 16 30 H 0.07 0.55 7.45 -51.93 -0.39 0.17 16 31 H 0.15 2.14 8.06 -52.49 -0.42 1.72 16 32 H 0.39 7.50 7.65 -40.82 -0.31 7.19 16 33 H 0.05 1.17 8.14 -51.93 -0.42 0.75 16 34 H 0.05 1.15 3.27 -51.93 -0.17 0.98 16 35 H 0.04 0.81 8.14 -51.93 -0.42 0.39 16 36 H 0.27 7.47 8.31 -40.82 -0.34 7.13 16 37 H 0.07 0.48 8.11 -51.93 -0.42 0.06 16 38 H 0.08 0.52 7.41 -51.93 -0.38 0.14 16 39 H 0.08 0.53 7.92 -51.93 -0.41 0.11 16 LS Contribution 331.20 15.07 4.99 4.99 Total: -1.00 -31.53 331.20 -8.07 -39.60 By element: Atomic # 1 Polarization: 8.52 SS G_CDS: -5.80 Total: 2.72 kcal Atomic # 6 Polarization: -10.35 SS G_CDS: -1.32 Total: -11.67 kcal Atomic # 7 Polarization: -41.29 SS G_CDS: 0.49 Total: -40.80 kcal Atomic # 8 Polarization: -12.95 SS G_CDS: 0.09 Total: -12.86 kcal Atomic # 14 Polarization: 21.92 SS G_CDS: -4.14 Total: 17.77 kcal Atomic # 16 Polarization: 2.62 SS G_CDS: -2.37 Total: 0.25 kcal Total LS contribution 4.99 Total: 4.99 kcal Total: -31.53 -8.07 -39.60 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000299565309.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 11.873 kcal (2) G-P(sol) polarization free energy of solvation -31.529 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -19.656 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.067 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.596 kcal (6) G-S(sol) free energy of system = (1) + (5) -27.723 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.38 seconds