Wall clock time and date at job start Tue Mar 31 2020 05:48:02 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 C 1.53002 * 109.47306 * 2 1 4 4 C 1.50698 * 109.47387 * 179.97438 * 3 2 1 5 5 C 1.37472 * 122.44862 * 265.02715 * 4 3 2 6 6 C 1.36655 * 113.29291 * 179.97438 * 5 4 3 7 7 C 1.46585 * 125.45448 * 179.97438 * 6 5 4 8 8 O 1.21706 * 120.00016 * 359.97438 * 7 6 5 9 9 N 1.34770 * 119.99775 * 179.97438 * 7 6 5 10 10 C 1.46505 * 120.00131 * 179.97438 * 9 7 6 11 11 H 1.09000 * 109.46611 * 325.00580 * 10 9 7 12 12 C 1.53005 * 109.46856 * 84.99813 * 10 9 7 13 13 C 1.50691 * 109.47595 * 205.00201 * 10 9 7 14 14 H 1.08009 * 120.00011 * 359.97438 * 13 10 9 15 15 C 1.37875 * 120.00649 * 179.97438 * 13 10 9 16 16 N 1.31508 * 120.00769 * 179.97438 * 15 13 10 17 17 Si 1.86804 * 119.99622 * 0.02562 * 15 13 10 18 18 H 1.48502 * 109.47210 * 89.99831 * 17 15 13 19 19 H 1.48495 * 109.47479 * 210.00058 * 17 15 13 20 20 H 1.48503 * 109.47110 * 329.99816 * 17 15 13 21 21 S 1.75827 * 109.08712 * 359.97438 * 6 5 4 22 22 C 1.33822 * 122.44920 * 84.99719 * 4 3 2 23 23 C 1.50698 * 124.52117 * 0.04672 * 22 4 3 24 24 H 1.08997 * 109.46526 * 60.00375 * 1 2 3 25 25 H 1.08998 * 109.47086 * 180.02562 * 1 2 3 26 26 H 1.08995 * 109.47037 * 300.00210 * 1 2 3 27 27 H 1.08999 * 109.47505 * 239.99827 * 2 1 3 28 28 H 1.09000 * 109.47037 * 119.99669 * 2 1 3 29 29 H 1.08999 * 109.46980 * 59.99506 * 3 2 1 30 30 H 1.09000 * 109.46802 * 299.99813 * 3 2 1 31 31 H 1.07998 * 123.35380 * 0.24060 * 5 4 3 32 32 H 0.97002 * 120.00483 * 0.02562 * 9 7 6 33 33 H 1.09000 * 109.46884 * 60.00935 * 12 10 9 34 34 H 1.09000 * 109.46873 * 179.97438 * 12 10 9 35 35 H 1.08996 * 109.47123 * 300.00108 * 12 10 9 36 36 H 0.96994 * 120.00680 * 179.97438 * 16 15 13 37 37 H 1.09004 * 109.47210 * 179.97438 * 23 22 4 38 38 H 1.09006 * 109.47355 * 299.99774 * 23 22 4 39 39 H 1.09000 * 109.47152 * 59.99821 * 23 22 4 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0401 1.4425 0.0000 4 6 3.5471 1.4425 0.0006 5 6 4.2842 1.5433 1.1567 6 6 5.6334 1.5238 0.9406 7 6 6.6624 1.6149 1.9806 8 8 6.3389 1.7181 3.1494 9 7 7.9666 1.5842 1.6426 10 6 8.9951 1.6757 2.6819 11 1 8.6509 2.3380 3.4763 12 6 9.2628 0.2840 3.2584 13 6 10.2651 2.2250 2.0850 14 1 10.3026 2.4800 1.0361 15 6 11.3793 2.4020 2.8776 16 7 12.4877 2.8809 2.3566 17 14 11.3147 1.9603 4.6916 18 1 11.7188 0.5426 4.8705 19 1 12.2423 2.8388 5.4484 20 1 9.9313 2.1483 5.1979 21 16 5.9374 1.3722 -0.7845 22 6 4.2656 1.3439 -1.1240 23 6 3.6766 1.2237 -2.5059 24 1 -0.3632 0.5138 -0.8900 25 1 -0.3633 -1.0276 0.0005 26 1 -0.3633 0.5138 0.8899 27 1 1.8934 -0.5138 -0.8899 28 1 1.8933 -0.5138 0.8900 29 1 1.6767 1.9563 0.8899 30 1 1.6768 1.9563 -0.8900 31 1 3.8411 1.6250 2.1382 32 1 8.2245 1.5023 0.7111 33 1 9.6070 -0.3783 2.4641 34 1 10.0283 0.3520 4.0314 35 1 8.3442 -0.1132 3.6902 36 1 13.2714 3.0057 2.9144 37 1 4.4805 1.1596 -3.2393 38 1 3.0610 0.3259 -2.5618 39 1 3.0622 2.0992 -2.7164 RHF calculation, no. of doubly occupied orbitals= 50 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000299565309.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:48:02 Heat of formation + Delta-G solvation = -47.587561 kcal Electronic energy + Delta-G solvation = -19359.856053 eV Core-core repulsion = 16392.470979 eV Total energy + Delta-G solvation = -2967.385074 eV No. of doubly occupied orbitals = 50 Molecular weight (most abundant/longest-lived isotopes) = 281.119 amu Computer time = 0.45 seconds Orbital eigenvalues (eV) -40.86161 -39.59399 -36.91779 -35.07268 -34.47942 -33.05442 -31.79024 -29.34015 -27.30080 -26.77145 -24.74389 -23.16259 -22.22457 -21.43090 -19.93763 -19.19064 -18.35094 -17.66132 -16.93168 -16.44794 -16.07902 -15.64746 -15.40918 -15.14018 -14.87955 -14.72630 -14.32851 -14.17133 -13.85201 -13.79189 -13.58774 -13.32682 -12.93397 -12.82841 -12.79606 -12.68246 -12.32075 -12.18350 -11.96040 -11.66827 -11.63587 -11.42916 -11.33916 -11.06616 -10.90120 -10.09236 -9.60180 -9.33556 -8.41002 -6.48023 -0.48734 0.47744 0.92578 1.25940 1.34213 1.35302 1.44096 2.18375 2.24029 2.29143 2.94706 3.79137 3.84623 4.06908 4.12389 4.29601 4.33272 4.39371 4.50017 4.56460 4.63170 4.67401 4.73729 4.77734 4.90787 4.93719 5.00424 5.05810 5.11423 5.20128 5.24329 5.26889 5.35058 5.45752 5.51337 5.52229 5.58226 6.07827 6.51120 6.69397 7.10722 7.25955 8.74229 Molecular weight = 281.12amu Principal moments of inertia in cm(-1) A = 0.033396 B = 0.003793 C = 0.003512 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 838.233937 B = 7379.522463 C = 7971.493593 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.150 4.150 2 C -0.117 4.117 3 C -0.053 4.053 4 C -0.131 4.131 5 C -0.048 4.048 6 C -0.298 4.298 7 C 0.577 3.423 8 O -0.586 6.586 9 N -0.697 5.697 10 C 0.242 3.758 11 H 0.026 0.974 12 C -0.156 4.156 13 C -0.538 4.538 14 H 0.056 0.944 15 C 0.032 3.968 16 N -0.931 5.931 17 Si 0.939 3.061 18 H -0.256 1.256 19 H -0.289 1.289 20 H -0.263 1.263 21 S 0.217 5.783 22 C -0.184 4.184 23 C -0.083 4.083 24 H 0.065 0.935 25 H 0.057 0.943 26 H 0.053 0.947 27 H 0.067 0.933 28 H 0.048 0.952 29 H 0.071 0.929 30 H 0.091 0.909 31 H 0.142 0.858 32 H 0.402 0.598 33 H 0.066 0.934 34 H 0.046 0.954 35 H 0.045 0.955 36 H 0.272 0.728 37 H 0.077 0.923 38 H 0.095 0.905 39 H 0.095 0.905 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -22.512 -6.075 -10.662 25.639 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.207 4.207 2 C -0.155 4.155 3 C -0.092 4.092 4 C -0.143 4.143 5 C -0.082 4.082 6 C -0.418 4.418 7 C 0.365 3.635 8 O -0.469 6.469 9 N -0.345 5.345 10 C 0.138 3.862 11 H 0.044 0.956 12 C -0.214 4.214 13 C -0.576 4.576 14 H 0.074 0.926 15 C -0.168 4.168 16 N -0.569 5.569 17 Si 0.766 3.234 18 H -0.182 1.182 19 H -0.216 1.216 20 H -0.188 1.188 21 S 0.486 5.514 22 C -0.304 4.304 23 C -0.142 4.142 24 H 0.084 0.916 25 H 0.076 0.924 26 H 0.072 0.928 27 H 0.086 0.914 28 H 0.067 0.933 29 H 0.090 0.910 30 H 0.109 0.891 31 H 0.160 0.840 32 H 0.237 0.763 33 H 0.085 0.915 34 H 0.064 0.936 35 H 0.064 0.936 36 H 0.081 0.919 37 H 0.096 0.904 38 H 0.113 0.887 39 H 0.114 0.886 Dipole moment (debyes) X Y Z Total from point charges -21.148 -6.031 -10.725 24.467 hybrid contribution -0.369 0.136 1.623 1.670 sum -21.517 -5.895 -9.103 24.095 Atomic orbital electron populations 1.21761 0.94539 1.02064 1.02324 1.21473 0.96462 0.95601 1.01972 1.20360 0.87128 0.98011 1.03749 1.18763 0.98700 1.06409 0.90423 1.20763 0.90663 0.96224 1.00545 1.24394 0.97753 1.21406 0.98271 1.17490 0.82391 0.76002 0.87600 1.90731 1.82396 1.53315 1.20488 1.45950 1.04910 1.72340 1.11307 1.18848 0.85950 0.93814 0.87618 0.95630 1.22355 0.99754 0.98713 1.00571 1.21201 0.95154 1.43866 0.97387 0.92572 1.25539 0.94595 0.94068 1.02617 1.69960 1.02970 1.45810 1.38182 0.86005 0.78399 0.78627 0.80414 1.18201 1.21629 1.18798 1.83025 1.04435 1.67381 0.96522 1.24524 0.97469 1.06571 1.01789 1.20546 1.01447 1.04541 0.87632 0.91609 0.92403 0.92795 0.91408 0.93329 0.91035 0.89083 0.83988 0.76325 0.91511 0.93572 0.93564 0.91865 0.90421 0.88663 0.88624 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.60 9.91 71.98 0.71 -0.89 16 2 C -0.12 -1.62 5.92 30.60 0.18 -1.44 16 3 C -0.05 -0.81 5.11 29.85 0.15 -0.66 16 4 C -0.13 -2.83 5.04 -21.05 -0.11 -2.93 16 5 C -0.05 -1.37 9.78 21.72 0.21 -1.16 16 6 C -0.30 -9.88 6.45 24.08 0.16 -9.72 16 7 C 0.58 24.43 7.75 86.42 0.67 25.10 16 8 O -0.59 -28.77 16.50 -4.37 -0.07 -28.84 16 9 N -0.70 -30.24 5.06 -450.16 -2.28 -32.52 16 10 C 0.24 12.10 2.15 44.24 0.10 12.19 16 11 H 0.03 1.42 6.63 -2.39 -0.02 1.40 16 12 C -0.16 -7.06 8.96 71.98 0.65 -6.42 16 13 C -0.54 -30.22 9.31 25.60 0.24 -29.98 16 14 H 0.06 3.35 7.98 -2.91 -0.02 3.33 16 15 C 0.03 1.83 5.45 84.66 0.46 2.30 16 16 N -0.93 -56.23 13.96 21.45 0.30 -55.93 16 17 Si 0.94 45.23 24.37 68.60 1.67 46.90 16 18 H -0.26 -11.53 6.87 99.48 0.68 -10.85 16 19 H -0.29 -13.64 7.11 99.48 0.71 -12.94 16 20 H -0.26 -12.70 6.53 99.48 0.65 -12.05 16 21 S 0.22 5.37 22.08 -56.49 -1.25 4.13 16 22 C -0.18 -3.61 6.28 24.68 0.15 -3.46 16 23 C -0.08 -0.96 9.44 71.24 0.67 -0.29 16 24 H 0.06 0.56 8.14 -2.39 -0.02 0.54 16 25 H 0.06 0.58 8.14 -2.39 -0.02 0.56 16 26 H 0.05 0.59 8.14 -2.39 -0.02 0.57 16 27 H 0.07 0.86 7.41 -2.39 -0.02 0.84 16 28 H 0.05 0.82 8.14 -2.39 -0.02 0.80 16 29 H 0.07 1.11 8.10 -2.39 -0.02 1.09 16 30 H 0.09 1.04 7.45 -2.39 -0.02 1.03 16 31 H 0.14 4.16 8.06 -2.91 -0.02 4.14 16 32 H 0.40 15.69 7.65 -92.71 -0.71 14.98 16 33 H 0.07 2.81 8.14 -2.39 -0.02 2.79 16 34 H 0.05 2.10 3.27 -2.39 -0.01 2.09 16 35 H 0.05 1.99 8.14 -2.39 -0.02 1.97 16 36 H 0.27 15.35 8.31 -92.71 -0.77 14.57 16 37 H 0.08 0.79 8.11 -2.38 -0.02 0.77 16 38 H 0.09 0.84 7.41 -2.38 -0.02 0.82 16 39 H 0.10 0.84 7.92 -2.39 -0.02 0.82 16 Total: -1.00 -69.20 331.20 2.88 -66.32 By element: Atomic # 1 Polarization: 17.03 SS G_CDS: 0.26 Total: 17.30 kcal Atomic # 6 Polarization: -21.60 SS G_CDS: 4.25 Total: -17.36 kcal Atomic # 7 Polarization: -86.46 SS G_CDS: -1.98 Total: -88.44 kcal Atomic # 8 Polarization: -28.77 SS G_CDS: -0.07 Total: -28.84 kcal Atomic # 14 Polarization: 45.23 SS G_CDS: 1.67 Total: 46.90 kcal Atomic # 16 Polarization: 5.37 SS G_CDS: -1.25 Total: 4.13 kcal Total: -69.20 2.88 -66.32 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000299565309.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 18.733 kcal (2) G-P(sol) polarization free energy of solvation -69.200 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -50.467 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.880 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -66.320 kcal (6) G-S(sol) free energy of system = (1) + (5) -47.588 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.45 seconds