Wall clock time and date at job start Tue Mar 31 2020 05:18:30 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50698 * 1 3 3 C 1.37982 * 120.07594 * 2 1 4 4 C 1.38338 * 120.14910 * 179.97438 * 3 2 1 5 5 C 1.38386 * 120.29212 * 0.02562 * 4 3 2 6 6 C 1.37929 * 120.14985 * 359.95994 * 5 4 3 7 7 C 1.39567 * 120.07476 * 179.97438 * 2 1 3 8 8 C 1.47807 * 120.14727 * 359.74968 * 7 2 1 9 9 O 1.21562 * 120.00297 * 353.52303 * 8 7 2 10 10 N 1.34782 * 120.00458 * 173.52052 * 8 7 2 11 11 C 1.39854 * 120.00231 * 184.94944 * 10 8 7 12 12 C 1.39311 * 119.95198 * 324.19107 * 11 10 8 13 13 C 1.38478 * 120.42921 * 179.72572 * 12 11 10 14 14 C 1.37691 * 120.32331 * 0.54918 * 13 12 11 15 15 C 1.40741 * 119.88538 * 359.72540 * 14 13 12 16 16 C 1.41412 * 120.20400 * 180.02562 * 15 14 13 17 17 H 1.07997 * 120.00377 * 31.58278 * 16 15 14 18 18 C 1.39942 * 119.99711 * 211.58088 * 16 15 14 19 19 N 1.30825 * 119.99913 * 7.72622 * 18 16 15 20 20 Si 1.86798 * 119.99636 * 187.72549 * 18 16 15 21 21 H 1.48498 * 109.47424 * 359.97438 * 20 18 16 22 22 H 1.48493 * 109.47188 * 120.00071 * 20 18 16 23 23 H 1.48499 * 109.46774 * 239.99988 * 20 18 16 24 24 C 1.38262 * 119.94890 * 144.46651 * 11 10 8 25 25 H 1.09002 * 109.47114 * 262.98569 * 1 2 3 26 26 H 1.09002 * 109.46976 * 22.98025 * 1 2 3 27 27 H 1.08993 * 109.46844 * 142.98584 * 1 2 3 28 28 H 1.08000 * 119.91980 * 359.97438 * 3 2 1 29 29 H 1.07994 * 119.85377 * 179.97438 * 4 3 2 30 30 H 1.07999 * 119.92394 * 179.97438 * 5 4 3 31 31 H 1.07998 * 120.07467 * 180.02562 * 6 5 4 32 32 H 0.96999 * 119.99717 * 4.94175 * 10 8 7 33 33 H 1.08008 * 119.78364 * 359.97438 * 12 11 10 34 34 H 1.07999 * 119.83649 * 180.28290 * 13 12 11 35 35 H 1.07996 * 120.05413 * 179.75075 * 14 13 12 36 36 H 0.97006 * 119.99633 * 180.02562 * 19 18 16 37 37 H 1.07997 * 120.16724 * 359.97438 * 24 11 10 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.1985 1.1940 0.0000 4 6 3.5819 1.1958 0.0005 5 6 4.2814 0.0018 0.0005 6 6 3.6025 -1.1989 0.0008 7 6 2.2064 -1.2078 0.0005 8 6 1.4723 -2.4907 0.0067 9 8 0.2630 -2.4985 0.1300 10 7 2.1437 -3.6520 -0.1245 11 6 1.4424 -4.8580 -0.2227 12 6 0.2661 -5.0395 0.5014 13 6 -0.4392 -6.2275 0.4071 14 6 0.0209 -7.2473 -0.3955 15 6 1.2107 -7.0805 -1.1285 16 6 1.6890 -8.1233 -1.9553 17 1 0.9923 -8.7925 -2.4380 18 6 3.0653 -8.2880 -2.1479 19 7 3.9132 -7.5782 -1.4487 20 14 3.6916 -9.5212 -3.4034 21 1 2.5387 -10.1918 -4.0563 22 1 4.5005 -8.8156 -4.4294 23 1 4.5335 -10.5371 -2.7219 24 6 1.9204 -5.8704 -1.0340 25 1 -0.3633 -0.1255 1.0200 26 1 -0.3633 0.9461 -0.4012 27 1 -0.3633 -0.8205 -0.6186 28 1 1.6584 2.1293 -0.0004 29 1 4.1182 2.1331 0.0001 30 1 5.3614 0.0101 0.0005 31 1 4.1497 -2.1300 0.0013 32 1 3.1133 -3.6513 -0.1509 33 1 -0.1001 -4.2471 1.1373 34 1 -1.3524 -6.3562 0.9692 35 1 -0.5305 -8.1734 -0.4626 36 1 4.8672 -7.6922 -1.5825 37 1 2.8343 -5.7323 -1.5927 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000313435559.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:18:30 Heat of formation + Delta-G solvation = 8.358974 kcal Electronic energy + Delta-G solvation = -20677.826709 eV Core-core repulsion = 17577.423708 eV Total energy + Delta-G solvation = -3100.403001 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 281.116 amu Computer time = 0.48 seconds Orbital eigenvalues (eV) -40.31974 -38.55570 -37.04491 -34.46626 -33.34491 -32.49654 -31.32929 -29.51162 -28.37270 -26.85683 -25.23430 -23.79283 -21.96202 -21.29785 -20.67514 -19.64842 -17.65322 -17.39259 -15.85284 -15.80239 -15.27486 -14.99699 -14.74906 -14.65676 -14.45515 -13.58921 -13.42266 -13.15942 -12.89451 -12.74782 -12.33860 -12.03690 -11.99798 -11.75259 -11.65117 -11.21022 -11.12425 -11.09172 -10.75054 -10.59610 -9.94622 -9.73567 -9.40779 -9.18467 -9.03108 -8.86025 -8.72183 -7.31308 -7.01257 -6.63636 -4.38930 0.86708 1.28395 2.66815 2.86594 3.08667 3.14153 3.18233 3.28488 3.64542 3.93211 3.96648 4.67865 4.71834 4.80470 4.82666 5.01960 5.24294 5.40830 5.60087 5.64910 5.79393 5.85430 5.91980 6.21828 6.26336 6.29344 6.34141 6.57531 6.65167 6.70552 6.84399 6.90469 7.05879 7.07411 7.27313 7.60701 7.69582 7.92191 8.04095 8.15232 8.32227 8.55773 8.75010 8.90568 8.95507 10.26969 Molecular weight = 281.12amu Principal moments of inertia in cm(-1) A = 0.021613 B = 0.004303 C = 0.003713 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1295.235517 B = 6504.930736 C = 7538.287604 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.121 4.121 2 C -0.024 4.024 3 C -0.134 4.134 4 C -0.096 4.096 5 C -0.136 4.136 6 C -0.083 4.083 7 C -0.132 4.132 8 C 0.548 3.452 9 O -0.518 6.518 10 N -0.658 5.658 11 C 0.138 3.862 12 C -0.217 4.217 13 C -0.093 4.093 14 C -0.219 4.219 15 C 0.118 3.882 16 C -0.466 4.466 17 H 0.077 0.923 18 C 0.074 3.926 19 N -0.813 5.813 20 Si 0.910 3.090 21 H -0.262 1.262 22 H -0.274 1.274 23 H -0.275 1.275 24 C -0.169 4.169 25 H 0.075 0.925 26 H 0.054 0.946 27 H 0.097 0.903 28 H 0.126 0.874 29 H 0.124 0.876 30 H 0.127 0.873 31 H 0.128 0.872 32 H 0.401 0.599 33 H 0.108 0.892 34 H 0.092 0.908 35 H 0.094 0.906 36 H 0.277 0.723 37 H 0.123 0.877 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.725 13.837 1.862 14.225 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.177 4.177 2 C -0.025 4.025 3 C -0.152 4.152 4 C -0.115 4.115 5 C -0.154 4.154 6 C -0.101 4.101 7 C -0.135 4.135 8 C 0.336 3.664 9 O -0.395 6.395 10 N -0.301 5.301 11 C 0.046 3.954 12 C -0.238 4.238 13 C -0.111 4.111 14 C -0.239 4.239 15 C 0.115 3.885 16 C -0.497 4.497 17 H 0.095 0.905 18 C -0.141 4.141 19 N -0.440 5.440 20 Si 0.735 3.265 21 H -0.186 1.186 22 H -0.199 1.199 23 H -0.201 1.201 24 C -0.191 4.191 25 H 0.093 0.907 26 H 0.073 0.927 27 H 0.116 0.884 28 H 0.144 0.856 29 H 0.142 0.858 30 H 0.145 0.855 31 H 0.146 0.854 32 H 0.237 0.763 33 H 0.126 0.874 34 H 0.111 0.889 35 H 0.112 0.888 36 H 0.087 0.913 37 H 0.141 0.859 Dipole moment (debyes) X Y Z Total from point charges 2.123 13.869 1.966 14.168 hybrid contribution 1.133 -0.568 -0.504 1.364 sum 3.256 13.301 1.462 13.772 Atomic orbital electron populations 1.21083 0.89982 1.02848 1.03789 1.20082 0.96986 0.91438 0.94026 1.21042 0.94254 0.97404 1.02541 1.21303 0.94267 0.98162 0.97720 1.21060 1.00106 0.92178 1.02081 1.21385 0.93089 0.98771 0.96900 1.19942 0.93641 0.93501 1.06433 1.18266 0.87291 0.83484 0.77373 1.90709 1.13619 1.86795 1.48408 1.43378 1.09936 1.05365 1.71451 1.17649 0.94443 0.84618 0.98706 1.20501 0.98422 0.98633 1.06276 1.20465 0.98064 0.93644 0.98970 1.21148 1.01288 0.98392 1.03090 1.17379 0.90094 0.91183 0.89794 1.19543 0.91758 1.12514 1.25904 0.90451 1.25830 0.96958 0.96227 0.95106 1.69778 1.03445 1.36356 1.34408 0.86225 0.79311 0.80347 0.80576 1.18555 1.19946 1.20076 1.21149 1.03479 0.92680 1.01768 0.90663 0.92706 0.88425 0.85575 0.85814 0.85549 0.85433 0.76333 0.87391 0.88943 0.88762 0.91271 0.85894 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -1.63 8.70 36.00 0.31 -1.32 16 2 C -0.02 -0.33 5.91 -104.22 -0.62 -0.95 16 3 C -0.13 -1.48 9.66 -39.64 -0.38 -1.86 16 4 C -0.10 -0.95 10.04 -39.49 -0.40 -1.34 16 5 C -0.14 -1.43 10.03 -39.64 -0.40 -1.83 16 6 C -0.08 -1.04 9.54 -39.18 -0.37 -1.42 16 7 C -0.13 -2.00 5.87 -104.97 -0.62 -2.62 16 8 C 0.55 10.26 7.54 -12.34 -0.09 10.16 16 9 O -0.52 -10.92 10.82 5.31 0.06 -10.86 16 10 N -0.66 -12.81 5.28 -10.77 -0.06 -12.87 16 11 C 0.14 3.24 6.27 -83.79 -0.53 2.72 16 12 C -0.22 -5.19 8.70 -39.09 -0.34 -5.53 16 13 C -0.09 -2.17 10.02 -39.69 -0.40 -2.57 16 14 C -0.22 -5.46 9.79 -38.84 -0.38 -5.84 16 15 C 0.12 3.15 5.53 -106.85 -0.59 2.56 16 16 C -0.47 -12.35 9.05 -37.74 -0.34 -12.69 16 17 H 0.08 1.98 7.86 -52.49 -0.41 1.57 16 18 C 0.07 1.84 5.29 -17.34 -0.09 1.75 16 19 N -0.81 -20.61 10.88 55.55 0.60 -20.01 16 20 Si 0.91 18.71 29.57 -169.99 -5.03 13.69 16 21 H -0.26 -5.35 7.11 56.52 0.40 -4.95 16 22 H -0.27 -5.53 7.11 56.52 0.40 -5.13 16 23 H -0.28 -5.58 7.11 56.52 0.40 -5.18 16 24 C -0.17 -4.33 8.55 -38.68 -0.33 -4.66 16 25 H 0.07 1.02 8.14 -51.93 -0.42 0.60 16 26 H 0.05 0.59 8.04 -51.93 -0.42 0.17 16 27 H 0.10 1.58 5.92 -51.93 -0.31 1.27 16 28 H 0.13 1.08 8.05 -52.49 -0.42 0.65 16 29 H 0.12 0.87 8.06 -52.49 -0.42 0.44 16 30 H 0.13 1.01 8.06 -52.49 -0.42 0.58 16 31 H 0.13 1.43 6.44 -52.49 -0.34 1.10 16 32 H 0.40 6.71 6.88 -40.82 -0.28 6.43 16 33 H 0.11 2.54 6.25 -52.48 -0.33 2.21 16 34 H 0.09 1.90 8.06 -52.49 -0.42 1.48 16 35 H 0.09 2.19 8.06 -52.49 -0.42 1.77 16 36 H 0.28 6.38 8.30 -40.82 -0.34 6.05 16 37 H 0.12 3.19 6.33 -52.49 -0.33 2.86 16 LS Contribution 312.80 15.07 4.71 4.71 Total: -1.00 -29.48 312.80 -9.36 -38.84 By element: Atomic # 1 Polarization: 16.01 SS G_CDS: -4.09 Total: 11.92 kcal Atomic # 6 Polarization: -19.86 SS G_CDS: -5.56 Total: -25.42 kcal Atomic # 7 Polarization: -33.42 SS G_CDS: 0.55 Total: -32.88 kcal Atomic # 8 Polarization: -10.92 SS G_CDS: 0.06 Total: -10.86 kcal Atomic # 14 Polarization: 18.71 SS G_CDS: -5.03 Total: 13.69 kcal Total LS contribution 4.71 Total: 4.71 kcal Total: -29.48 -9.36 -38.84 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000313435559.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 47.195 kcal (2) G-P(sol) polarization free energy of solvation -29.480 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 17.715 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.356 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.836 kcal (6) G-S(sol) free energy of system = (1) + (5) 8.359 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.48 seconds