Wall clock time and date at job start Tue Mar 31 2020 05:18:33 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50701 * 1 3 3 C 1.38359 * 119.85634 * 2 1 4 4 C 1.37955 * 120.14739 * 179.69561 * 3 2 1 5 5 C 1.39590 * 119.84943 * 0.28871 * 4 3 2 6 6 C 1.47817 * 120.14326 * 180.02562 * 5 4 3 7 7 O 1.21564 * 119.99976 * 359.97438 * 6 5 4 8 8 N 1.34777 * 119.99890 * 179.97438 * 6 5 4 9 9 C 1.39862 * 119.99906 * 174.86500 * 8 6 5 10 10 C 1.39302 * 119.95060 * 146.35015 * 9 8 6 11 11 C 1.38480 * 120.42980 * 179.97438 * 10 9 8 12 12 C 1.37684 * 120.32205 * 359.97438 * 11 10 9 13 13 C 1.40748 * 119.89047 * 0.02562 * 12 11 10 14 14 C 1.41408 * 120.21082 * 179.97438 * 13 12 11 15 15 H 1.07995 * 119.99855 * 151.79269 * 14 13 12 16 16 C 1.39935 * 119.99890 * 331.79843 * 14 13 12 17 17 N 1.30832 * 120.00050 * 348.98722 * 16 14 13 18 18 Si 1.86802 * 119.99944 * 168.99367 * 16 14 13 19 19 H 1.48491 * 109.47200 * 89.99520 * 18 16 14 20 20 H 1.48502 * 109.46602 * 209.99781 * 18 16 14 21 21 H 1.48501 * 109.46773 * 329.99454 * 18 16 14 22 22 C 1.38265 * 119.95010 * 326.07651 * 9 8 6 23 23 C 1.39584 * 119.71180 * 359.97438 * 5 4 3 24 24 C 1.37958 * 119.85079 * 0.02562 * 23 5 4 25 25 H 1.09008 * 109.46874 * 89.99351 * 1 2 3 26 26 H 1.08993 * 109.47352 * 209.99556 * 1 2 3 27 27 H 1.09006 * 109.46845 * 330.00097 * 1 2 3 28 28 H 1.08005 * 119.92424 * 359.97438 * 3 2 1 29 29 H 1.07999 * 120.07449 * 180.30138 * 4 3 2 30 30 H 0.96994 * 120.00167 * 354.86364 * 8 6 5 31 31 H 1.08005 * 119.78645 * 359.97438 * 10 9 8 32 32 H 1.08006 * 119.84238 * 180.02562 * 11 10 9 33 33 H 1.08001 * 120.05355 * 180.02562 * 12 11 10 34 34 H 0.96998 * 119.99808 * 180.02562 * 17 16 14 35 35 H 1.08007 * 120.16000 * 0.02562 * 22 9 8 36 36 H 1.08000 * 120.07777 * 179.97438 * 23 5 4 37 37 H 1.07998 * 119.92741 * 180.02562 * 24 23 5 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.1958 1.2000 0.0000 4 6 3.5753 1.2070 0.0063 5 6 4.2762 -0.0002 0.0067 6 6 5.7544 -0.0003 0.0140 7 8 6.3622 1.0525 0.0193 8 7 6.4282 -1.1675 0.0148 9 6 7.8231 -1.1698 -0.0867 10 6 8.5668 -2.1462 0.5721 11 6 9.9483 -2.1581 0.4780 12 6 10.6024 -1.2042 -0.2689 13 6 9.8644 -0.2114 -0.9401 14 6 10.5293 0.7719 -1.7087 15 1 10.0309 1.2260 -2.5523 16 6 11.8330 1.1565 -1.3762 17 7 12.3583 0.7742 -0.2405 18 14 12.8234 2.2158 -2.5537 19 1 12.5878 3.6496 -2.2472 20 1 14.2680 1.9077 -2.4009 21 1 12.4015 1.9321 -3.9489 22 6 8.4616 -0.2062 -0.8453 23 6 3.5752 -1.2072 0.0011 24 6 2.1957 -1.2001 -0.0052 25 1 -0.3633 0.0001 -1.0278 26 1 -0.3634 -0.8900 0.5137 27 1 -0.3633 0.8901 0.5139 28 1 1.6522 2.1332 -0.0004 29 1 4.1117 2.1443 0.0112 30 1 5.9458 -2.0060 0.0858 31 1 8.0626 -2.8989 1.1601 32 1 10.5155 -2.9199 0.9923 33 1 11.6800 -1.2179 -0.3397 34 1 13.2618 1.0411 -0.0099 35 1 7.8857 0.5490 -1.3598 36 1 4.1116 -2.1446 0.0009 37 1 1.6521 -2.1333 -0.0091 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000313436237.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:18:33 Heat of formation + Delta-G solvation = 4.088599 kcal Electronic energy + Delta-G solvation = -20252.192956 eV Core-core repulsion = 17151.604777 eV Total energy + Delta-G solvation = -3100.588179 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 281.116 amu Computer time = 0.50 seconds Orbital eigenvalues (eV) -40.20093 -38.70462 -37.03914 -34.48561 -33.26319 -32.71254 -31.06185 -29.79277 -28.61252 -26.99427 -25.27108 -22.93073 -22.75114 -21.17194 -20.79019 -19.59647 -18.05732 -17.26760 -15.80316 -15.49371 -15.30015 -14.79735 -14.73518 -14.69422 -14.42415 -13.90490 -13.68568 -13.43202 -13.01786 -12.82139 -12.48528 -12.19973 -12.05142 -11.68530 -11.64136 -11.27912 -11.13884 -11.06406 -10.64082 -10.48260 -10.12162 -9.73044 -9.49180 -9.15100 -9.11126 -8.86333 -8.80050 -7.39687 -6.87237 -6.63653 -4.31920 0.80485 1.26154 2.69753 2.87542 3.12017 3.16823 3.21078 3.29996 3.60715 3.95290 4.01178 4.58661 4.62354 4.70692 4.80453 4.98181 5.13067 5.23607 5.31328 5.48541 5.55817 5.73453 5.81136 5.88451 6.18205 6.24517 6.32272 6.37627 6.39857 6.74839 6.80018 7.03997 7.06777 7.10524 7.29983 7.58043 7.74724 7.98871 8.11605 8.18789 8.29356 8.65301 8.74731 8.97514 9.00993 10.29781 Molecular weight = 281.12amu Principal moments of inertia in cm(-1) A = 0.028114 B = 0.003576 C = 0.003250 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 995.719161 B = 7828.758596 C = 8613.571362 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.117 4.117 2 C -0.070 4.070 3 C -0.130 4.130 4 C -0.057 4.057 5 C -0.129 4.129 6 C 0.545 3.455 7 O -0.510 6.510 8 N -0.663 5.663 9 C 0.149 3.851 10 C -0.258 4.258 11 C -0.094 4.094 12 C -0.167 4.167 13 C 0.119 3.881 14 C -0.457 4.457 15 H 0.076 0.924 16 C 0.073 3.927 17 N -0.801 5.801 18 Si 0.911 3.089 19 H -0.270 1.270 20 H -0.277 1.277 21 H -0.262 1.262 22 C -0.207 4.207 23 C -0.085 4.085 24 C -0.130 4.130 25 H 0.072 0.928 26 H 0.067 0.933 27 H 0.067 0.933 28 H 0.127 0.873 29 H 0.137 0.863 30 H 0.397 0.603 31 H 0.089 0.911 32 H 0.092 0.908 33 H 0.122 0.878 34 H 0.279 0.721 35 H 0.106 0.894 36 H 0.127 0.873 37 H 0.126 0.874 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -17.796 -3.728 0.489 18.189 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.173 4.173 2 C -0.070 4.070 3 C -0.148 4.148 4 C -0.076 4.076 5 C -0.133 4.133 6 C 0.332 3.668 7 O -0.386 6.386 8 N -0.307 5.307 9 C 0.057 3.943 10 C -0.279 4.279 11 C -0.113 4.113 12 C -0.187 4.187 13 C 0.116 3.884 14 C -0.488 4.488 15 H 0.094 0.906 16 C -0.143 4.143 17 N -0.427 5.427 18 Si 0.736 3.264 19 H -0.195 1.195 20 H -0.202 1.202 21 H -0.186 1.186 22 C -0.228 4.228 23 C -0.103 4.103 24 C -0.148 4.148 25 H 0.091 0.909 26 H 0.086 0.914 27 H 0.086 0.914 28 H 0.145 0.855 29 H 0.155 0.845 30 H 0.232 0.768 31 H 0.107 0.893 32 H 0.110 0.890 33 H 0.140 0.860 34 H 0.090 0.910 35 H 0.125 0.875 36 H 0.144 0.856 37 H 0.144 0.856 Dipole moment (debyes) X Y Z Total from point charges -17.161 -2.926 0.618 17.420 hybrid contribution 0.273 0.025 -0.269 0.384 sum -16.888 -2.901 0.350 17.139 Atomic orbital electron populations 1.20842 0.91023 1.02939 1.02516 1.20120 0.96228 0.93234 0.97418 1.21026 0.93832 0.97774 1.02127 1.21323 0.93784 0.98011 0.94482 1.20087 0.93181 0.94451 1.05545 1.18300 0.86774 0.84295 0.77436 1.90841 1.69281 1.30884 1.47588 1.43358 1.06687 1.08187 1.72440 1.17427 0.79774 0.98465 0.98616 1.20056 0.94041 1.03928 1.09918 1.20479 0.93045 0.98419 0.99358 1.21417 1.00201 0.94868 1.02196 1.17504 0.90118 0.90780 0.90036 1.19541 0.97792 1.18853 1.12570 0.90559 1.25885 0.97724 0.95789 0.94929 1.69804 1.15437 1.37937 1.19564 0.86265 0.78586 0.80205 0.81354 1.19522 1.20185 1.18560 1.20994 0.94911 1.01501 1.05393 1.21332 0.94476 0.97154 0.97379 1.20949 0.93796 0.97737 1.02271 0.90906 0.91383 0.91355 0.85462 0.84470 0.76819 0.89274 0.88972 0.86033 0.91033 0.87547 0.85563 0.85565 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -0.76 10.00 36.01 0.36 -0.40 16 2 C -0.07 -0.67 5.89 -104.53 -0.62 -1.29 16 3 C -0.13 -1.39 9.68 -39.64 -0.38 -1.78 16 4 C -0.06 -0.78 9.60 -39.18 -0.38 -1.16 16 5 C -0.13 -1.93 5.87 -104.97 -0.62 -2.55 16 6 C 0.54 10.53 7.50 -12.34 -0.09 10.44 16 7 O -0.51 -12.14 14.06 5.31 0.07 -12.07 16 8 N -0.66 -12.42 5.28 -10.77 -0.06 -12.47 16 9 C 0.15 3.46 6.26 -83.79 -0.52 2.94 16 10 C -0.26 -5.78 9.97 -39.10 -0.39 -6.17 16 11 C -0.09 -2.23 10.02 -39.69 -0.40 -2.62 16 12 C -0.17 -4.45 8.66 -38.84 -0.34 -4.79 16 13 C 0.12 3.32 5.55 -106.85 -0.59 2.73 16 14 C -0.46 -12.77 9.06 -37.74 -0.34 -13.11 16 15 H 0.08 2.07 7.87 -52.49 -0.41 1.66 16 16 C 0.07 1.91 5.25 -17.34 -0.09 1.82 16 17 N -0.80 -21.50 10.81 55.55 0.60 -20.90 16 18 Si 0.91 19.49 29.57 -169.99 -5.03 14.46 16 19 H -0.27 -5.74 7.11 56.52 0.40 -5.34 16 20 H -0.28 -5.72 7.11 56.52 0.40 -5.31 16 21 H -0.26 -5.51 7.11 56.52 0.40 -5.11 16 22 C -0.21 -5.48 8.39 -38.68 -0.32 -5.81 16 23 C -0.08 -0.99 9.54 -39.18 -0.37 -1.36 16 24 C -0.13 -1.27 9.68 -39.64 -0.38 -1.65 16 25 H 0.07 0.42 8.14 -51.92 -0.42 0.00 16 26 H 0.07 0.37 8.08 -51.93 -0.42 -0.05 16 27 H 0.07 0.39 8.08 -51.93 -0.42 -0.03 16 28 H 0.13 1.06 8.06 -52.48 -0.42 0.64 16 29 H 0.14 1.95 7.65 -52.49 -0.40 1.55 16 30 H 0.40 5.74 6.87 -40.82 -0.28 5.46 16 31 H 0.09 1.71 8.06 -52.48 -0.42 1.29 16 32 H 0.09 1.92 8.06 -52.48 -0.42 1.49 16 33 H 0.12 3.32 6.18 -52.49 -0.32 2.99 16 34 H 0.28 6.80 8.30 -40.82 -0.34 6.46 16 35 H 0.11 2.91 6.44 -52.48 -0.34 2.57 16 36 H 0.13 1.21 6.42 -52.49 -0.34 0.87 16 37 H 0.13 0.91 8.06 -52.49 -0.42 0.49 16 LS Contribution 318.23 15.07 4.80 4.80 Total: -1.00 -32.04 318.23 -9.28 -41.32 By element: Atomic # 1 Polarization: 13.81 SS G_CDS: -4.18 Total: 9.63 kcal Atomic # 6 Polarization: -19.29 SS G_CDS: -5.48 Total: -24.77 kcal Atomic # 7 Polarization: -33.91 SS G_CDS: 0.54 Total: -33.37 kcal Atomic # 8 Polarization: -12.14 SS G_CDS: 0.07 Total: -12.07 kcal Atomic # 14 Polarization: 19.49 SS G_CDS: -5.03 Total: 14.46 kcal Total LS contribution 4.80 Total: 4.80 kcal Total: -32.04 -9.28 -41.32 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000313436237.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 45.409 kcal (2) G-P(sol) polarization free energy of solvation -32.045 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 13.364 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.276 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.320 kcal (6) G-S(sol) free energy of system = (1) + (5) 4.089 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.51 seconds