Wall clock time and date at job start Tue Mar 31 2020 05:18:32 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50701 * 1 3 3 C 1.38359 * 119.85634 * 2 1 4 4 C 1.37955 * 120.14739 * 179.69561 * 3 2 1 5 5 C 1.39590 * 119.84943 * 0.28871 * 4 3 2 6 6 C 1.47817 * 120.14326 * 180.02562 * 5 4 3 7 7 O 1.21564 * 119.99976 * 359.97438 * 6 5 4 8 8 N 1.34777 * 119.99890 * 179.97438 * 6 5 4 9 9 C 1.39862 * 119.99906 * 174.86500 * 8 6 5 10 10 C 1.39302 * 119.95060 * 146.35015 * 9 8 6 11 11 C 1.38480 * 120.42980 * 179.97438 * 10 9 8 12 12 C 1.37684 * 120.32205 * 359.97438 * 11 10 9 13 13 C 1.40748 * 119.89047 * 0.02562 * 12 11 10 14 14 C 1.41408 * 120.21082 * 179.97438 * 13 12 11 15 15 H 1.07995 * 119.99855 * 151.79269 * 14 13 12 16 16 C 1.39935 * 119.99890 * 331.79843 * 14 13 12 17 17 N 1.30832 * 120.00050 * 348.98722 * 16 14 13 18 18 Si 1.86802 * 119.99944 * 168.99367 * 16 14 13 19 19 H 1.48491 * 109.47200 * 89.99520 * 18 16 14 20 20 H 1.48502 * 109.46602 * 209.99781 * 18 16 14 21 21 H 1.48501 * 109.46773 * 329.99454 * 18 16 14 22 22 C 1.38265 * 119.95010 * 326.07651 * 9 8 6 23 23 C 1.39584 * 119.71180 * 359.97438 * 5 4 3 24 24 C 1.37958 * 119.85079 * 0.02562 * 23 5 4 25 25 H 1.09008 * 109.46874 * 89.99351 * 1 2 3 26 26 H 1.08993 * 109.47352 * 209.99556 * 1 2 3 27 27 H 1.09006 * 109.46845 * 330.00097 * 1 2 3 28 28 H 1.08005 * 119.92424 * 359.97438 * 3 2 1 29 29 H 1.07999 * 120.07449 * 180.30138 * 4 3 2 30 30 H 0.96994 * 120.00167 * 354.86364 * 8 6 5 31 31 H 1.08005 * 119.78645 * 359.97438 * 10 9 8 32 32 H 1.08006 * 119.84238 * 180.02562 * 11 10 9 33 33 H 1.08001 * 120.05355 * 180.02562 * 12 11 10 34 34 H 0.96998 * 119.99808 * 180.02562 * 17 16 14 35 35 H 1.08007 * 120.16000 * 0.02562 * 22 9 8 36 36 H 1.08000 * 120.07777 * 179.97438 * 23 5 4 37 37 H 1.07998 * 119.92741 * 180.02562 * 24 23 5 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.1958 1.2000 0.0000 4 6 3.5753 1.2070 0.0063 5 6 4.2762 -0.0002 0.0067 6 6 5.7544 -0.0003 0.0140 7 8 6.3622 1.0525 0.0193 8 7 6.4282 -1.1675 0.0148 9 6 7.8231 -1.1698 -0.0867 10 6 8.5668 -2.1462 0.5721 11 6 9.9483 -2.1581 0.4780 12 6 10.6024 -1.2042 -0.2689 13 6 9.8644 -0.2114 -0.9401 14 6 10.5293 0.7719 -1.7087 15 1 10.0309 1.2260 -2.5523 16 6 11.8330 1.1565 -1.3762 17 7 12.3583 0.7742 -0.2405 18 14 12.8234 2.2158 -2.5537 19 1 12.5878 3.6496 -2.2472 20 1 14.2680 1.9077 -2.4009 21 1 12.4015 1.9321 -3.9489 22 6 8.4616 -0.2062 -0.8453 23 6 3.5752 -1.2072 0.0011 24 6 2.1957 -1.2001 -0.0052 25 1 -0.3633 0.0001 -1.0278 26 1 -0.3634 -0.8900 0.5137 27 1 -0.3633 0.8901 0.5139 28 1 1.6522 2.1332 -0.0004 29 1 4.1117 2.1443 0.0112 30 1 5.9458 -2.0060 0.0858 31 1 8.0626 -2.8989 1.1601 32 1 10.5155 -2.9199 0.9923 33 1 11.6800 -1.2179 -0.3397 34 1 13.2618 1.0411 -0.0099 35 1 7.8857 0.5490 -1.3598 36 1 4.1116 -2.1446 0.0009 37 1 1.6521 -2.1333 -0.0091 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000313436237.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:18:32 Heat of formation + Delta-G solvation = -14.397019 kcal Electronic energy + Delta-G solvation = -20252.994553 eV Core-core repulsion = 17151.604777 eV Total energy + Delta-G solvation = -3101.389775 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 281.116 amu Computer time = 0.50 seconds Orbital eigenvalues (eV) -41.59223 -39.93093 -38.81005 -36.29021 -34.96228 -33.77761 -31.98671 -31.77301 -30.19371 -28.06732 -27.27067 -24.25747 -23.64926 -22.88023 -22.42618 -21.08738 -19.71223 -18.84499 -17.47488 -17.11269 -16.50554 -16.30220 -16.15038 -16.11397 -15.81185 -15.00551 -14.86002 -14.59430 -14.52781 -14.32663 -13.96816 -13.65150 -13.15405 -13.01139 -12.89270 -12.83050 -12.60177 -12.54952 -12.23488 -11.99608 -11.95325 -11.61189 -11.29569 -10.99354 -10.69309 -9.99265 -9.72706 -9.39515 -8.75407 -8.59840 -6.40978 -0.22796 0.38631 0.90675 0.98984 1.34868 1.46466 1.50665 1.88819 2.12525 2.21573 2.71781 2.85753 3.62380 3.70704 3.81978 3.98337 4.01917 4.36793 4.41557 4.44098 4.58999 4.73773 4.79882 4.89114 4.99578 5.05699 5.07248 5.09205 5.16631 5.24020 5.29135 5.32649 5.40209 5.57644 5.72934 5.82351 5.94099 6.04569 6.08595 6.31927 6.56993 6.66311 6.91507 6.97659 7.22528 8.35619 Molecular weight = 281.12amu Principal moments of inertia in cm(-1) A = 0.028114 B = 0.003576 C = 0.003250 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 995.719161 B = 7828.758596 C = 8613.571362 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.116 4.116 2 C -0.058 4.058 3 C -0.132 4.132 4 C -0.076 4.076 5 C -0.159 4.159 6 C 0.542 3.458 7 O -0.569 6.569 8 N -0.651 5.651 9 C 0.153 3.847 10 C -0.246 4.246 11 C -0.091 4.091 12 C -0.192 4.192 13 C 0.088 3.912 14 C -0.502 4.502 15 H 0.065 0.935 16 C 0.032 3.968 17 N -0.831 5.831 18 Si 0.987 3.013 19 H -0.266 1.266 20 H -0.258 1.258 21 H -0.259 1.259 22 C -0.235 4.235 23 C -0.080 4.080 24 C -0.126 4.126 25 H 0.085 0.915 26 H 0.085 0.915 27 H 0.077 0.923 28 H 0.150 0.850 29 H 0.115 0.885 30 H 0.420 0.580 31 H 0.135 0.865 32 H 0.127 0.873 33 H 0.108 0.892 34 H 0.288 0.712 35 H 0.082 0.918 36 H 0.148 0.852 37 H 0.163 0.837 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -20.407 -5.663 1.018 21.203 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.172 4.172 2 C -0.059 4.059 3 C -0.149 4.149 4 C -0.096 4.096 5 C -0.162 4.162 6 C 0.332 3.668 7 O -0.448 6.448 8 N -0.297 5.297 9 C 0.060 3.940 10 C -0.267 4.267 11 C -0.110 4.110 12 C -0.212 4.212 13 C 0.085 3.915 14 C -0.532 4.532 15 H 0.083 0.917 16 C -0.182 4.182 17 N -0.458 5.458 18 Si 0.807 3.193 19 H -0.191 1.191 20 H -0.182 1.182 21 H -0.183 1.183 22 C -0.256 4.256 23 C -0.098 4.098 24 C -0.144 4.144 25 H 0.104 0.896 26 H 0.104 0.896 27 H 0.096 0.904 28 H 0.168 0.832 29 H 0.133 0.867 30 H 0.259 0.741 31 H 0.152 0.848 32 H 0.145 0.855 33 H 0.126 0.874 34 H 0.099 0.901 35 H 0.100 0.900 36 H 0.165 0.835 37 H 0.181 0.819 Dipole moment (debyes) X Y Z Total from point charges -19.820 -4.915 1.161 20.453 hybrid contribution 0.836 0.545 -0.353 1.059 sum -18.984 -4.370 0.808 19.497 Atomic orbital electron populations 1.20941 0.88209 1.04392 1.03707 1.20611 0.98212 0.92558 0.94494 1.21279 0.92426 0.99696 1.01533 1.21331 0.95308 0.96999 0.95915 1.19804 0.90142 0.96496 1.09755 1.19101 0.88763 0.83349 0.75569 1.90808 1.70927 1.32872 1.50229 1.43221 1.04999 1.09454 1.72019 1.17538 0.82041 0.97379 0.97018 1.20507 0.93687 1.03829 1.08643 1.20873 0.94027 0.97999 0.98120 1.21392 0.99692 0.96094 1.04015 1.17848 0.91020 0.91630 0.91002 1.19759 0.99614 1.20482 1.13391 0.91716 1.26756 0.98024 0.96862 0.96528 1.69851 1.16158 1.38917 1.20855 0.85150 0.77447 0.78023 0.78694 1.19136 1.18231 1.18309 1.20944 0.94706 1.02699 1.07290 1.21567 0.95571 0.96421 0.96268 1.21386 0.92960 0.99380 1.00625 0.89617 0.89613 0.90364 0.83237 0.86669 0.74074 0.84768 0.85543 0.87393 0.90137 0.89993 0.83479 0.81921 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -0.97 10.00 71.24 0.71 -0.26 16 2 C -0.06 -0.91 5.89 -19.80 -0.12 -1.03 16 3 C -0.13 -2.61 9.68 22.23 0.22 -2.39 16 4 C -0.08 -2.15 9.60 22.53 0.22 -1.93 16 5 C -0.16 -4.75 5.87 -20.09 -0.12 -4.87 16 6 C 0.54 21.76 7.50 86.78 0.65 22.42 16 7 O -0.57 -29.17 14.06 -3.92 -0.06 -29.22 16 8 N -0.65 -24.28 5.28 -306.26 -1.62 -25.90 16 9 C 0.15 7.22 6.26 38.12 0.24 7.46 16 10 C -0.25 -10.58 9.97 22.58 0.23 -10.35 16 11 C -0.09 -4.25 10.02 22.20 0.22 -4.03 16 12 C -0.19 -10.58 8.66 22.75 0.20 -10.39 16 13 C 0.09 5.21 5.55 -21.31 -0.12 5.09 16 14 C -0.50 -29.96 9.06 23.46 0.21 -29.75 16 15 H 0.06 3.82 7.87 -2.91 -0.02 3.79 16 16 C 0.03 1.73 5.25 85.25 0.45 2.18 16 17 N -0.83 -46.20 10.81 21.82 0.24 -45.96 16 18 Si 0.99 41.27 29.57 68.60 2.03 43.30 16 19 H -0.27 -10.91 7.11 99.48 0.71 -10.20 16 20 H -0.26 -9.95 7.11 99.48 0.71 -9.24 16 21 H -0.26 -10.62 7.11 99.48 0.71 -9.91 16 22 C -0.23 -13.22 8.39 22.85 0.19 -13.03 16 23 C -0.08 -1.66 9.54 22.53 0.21 -1.45 16 24 C -0.13 -1.96 9.68 22.23 0.22 -1.74 16 25 H 0.09 0.58 8.14 -2.38 -0.02 0.57 16 26 H 0.09 0.48 8.08 -2.39 -0.02 0.46 16 27 H 0.08 0.55 8.08 -2.38 -0.02 0.53 16 28 H 0.15 2.20 8.06 -2.91 -0.02 2.17 16 29 H 0.12 3.62 7.65 -2.91 -0.02 3.60 16 30 H 0.42 11.30 6.87 -92.71 -0.64 10.66 16 31 H 0.13 4.57 8.06 -2.91 -0.02 4.55 16 32 H 0.13 4.94 8.06 -2.91 -0.02 4.92 16 33 H 0.11 6.15 6.18 -2.91 -0.02 6.13 16 34 H 0.29 14.36 8.30 -92.71 -0.77 13.59 16 35 H 0.08 4.91 6.44 -2.91 -0.02 4.89 16 36 H 0.15 2.32 6.42 -2.91 -0.02 2.30 16 37 H 0.16 1.39 8.06 -2.91 -0.02 1.37 16 Total: -1.00 -76.37 318.23 4.66 -71.71 By element: Atomic # 1 Polarization: 29.71 SS G_CDS: 0.46 Total: 30.17 kcal Atomic # 6 Polarization: -47.70 SS G_CDS: 3.61 Total: -44.09 kcal Atomic # 7 Polarization: -70.48 SS G_CDS: -1.38 Total: -71.86 kcal Atomic # 8 Polarization: -29.17 SS G_CDS: -0.06 Total: -29.22 kcal Atomic # 14 Polarization: 41.27 SS G_CDS: 2.03 Total: 43.30 kcal Total: -76.37 4.66 -71.71 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000313436237.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 57.311 kcal (2) G-P(sol) polarization free energy of solvation -76.371 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -19.059 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.662 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -71.708 kcal (6) G-S(sol) free energy of system = (1) + (5) -14.397 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.50 seconds