Wall clock time and date at job start Tue Mar 31 2020 05:18:35 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50702 * 1 3 3 C 1.38380 * 119.92981 * 2 1 4 4 C 1.38345 * 120.29642 * 180.02562 * 3 2 1 5 5 C 1.37965 * 120.14505 * 0.25505 * 4 3 2 6 6 C 1.39571 * 119.85461 * 359.49163 * 5 4 3 7 7 C 1.47816 * 120.14966 * 180.27372 * 6 5 4 8 8 O 1.21560 * 119.99917 * 180.23363 * 7 6 5 9 9 N 1.34777 * 119.99925 * 0.23603 * 7 6 5 10 10 C 1.39857 * 120.00281 * 174.86408 * 9 7 6 11 11 C 1.39303 * 119.95300 * 146.35124 * 10 9 7 12 12 C 1.38483 * 120.43050 * 179.97438 * 11 10 9 13 13 C 1.37693 * 120.31972 * 0.02562 * 12 11 10 14 14 C 1.40736 * 119.88893 * 359.97438 * 13 12 11 15 15 C 1.41413 * 120.20645 * 179.97438 * 14 13 12 16 16 H 1.08004 * 119.99885 * 151.79556 * 15 14 13 17 17 C 1.39932 * 119.99970 * 331.79371 * 15 14 13 18 18 N 1.30823 * 119.99985 * 348.99971 * 17 15 14 19 19 Si 1.86803 * 119.99825 * 168.99485 * 17 15 14 20 20 H 1.48503 * 109.47044 * 60.00376 * 19 17 15 21 21 H 1.48498 * 109.47064 * 180.02562 * 19 17 15 22 22 H 1.48501 * 109.47303 * 300.00341 * 19 17 15 23 23 C 1.38263 * 119.94329 * 326.07799 * 10 9 7 24 24 C 1.37934 * 119.92558 * 180.02562 * 2 1 3 25 25 H 1.08996 * 109.47215 * 90.00276 * 1 2 3 26 26 H 1.09000 * 109.46933 * 209.99953 * 1 2 3 27 27 H 1.08996 * 109.46822 * 329.99899 * 1 2 3 28 28 H 1.08003 * 119.85206 * 0.03737 * 3 2 1 29 29 H 1.07997 * 119.92374 * 179.97438 * 4 3 2 30 30 H 1.08007 * 120.07466 * 179.75045 * 5 4 3 31 31 H 0.97002 * 119.99625 * 354.86128 * 9 7 6 32 32 H 1.08007 * 119.78501 * 0.02562 * 11 10 9 33 33 H 1.08000 * 119.83967 * 180.02562 * 12 11 10 34 34 H 1.07996 * 120.05181 * 179.97438 * 13 12 11 35 35 H 0.96999 * 119.99776 * 180.02562 * 18 17 15 36 36 H 1.07995 * 120.16793 * 359.97438 * 23 10 9 37 37 H 1.07999 * 120.07595 * 359.95831 * 24 2 1 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.1974 1.1992 0.0000 4 6 3.5809 1.2081 -0.0005 5 6 4.2813 0.0195 -0.0064 6 6 3.5913 -1.1937 -0.0010 7 6 4.3352 -2.4710 -0.0011 8 8 3.7314 -3.5260 -0.0008 9 7 5.6830 -2.4658 -0.0016 10 6 6.3870 -3.6694 0.1067 11 6 7.6052 -3.8242 -0.5508 12 6 8.3108 -5.0115 -0.4500 13 6 7.8149 -6.0531 0.3018 14 6 6.5854 -5.9113 0.9718 15 6 6.0696 -6.9769 1.7452 16 1 5.4261 -6.7705 2.5877 17 6 6.3929 -8.2987 1.4190 18 7 6.9881 -8.5657 0.2850 19 14 5.9749 -9.6818 2.6030 20 1 4.5071 -9.7161 2.8257 21 1 6.4191 -10.9769 2.0279 22 1 6.6667 -9.4520 3.8968 23 6 5.8753 -4.7018 0.8709 24 6 2.1951 -1.1954 -0.0005 25 1 -0.3633 0.0000 -1.0276 26 1 -0.3633 -0.8900 0.5138 27 1 -0.3633 0.8900 0.5138 28 1 1.6539 2.1325 0.0006 29 1 4.1136 2.1475 -0.0009 30 1 5.3614 0.0278 -0.0109 31 1 6.1647 -1.6272 -0.0771 32 1 8.0025 -3.0126 -1.1425 33 1 9.2546 -5.1210 -0.9634 34 1 8.3686 -6.9773 0.3772 35 1 7.2118 -9.4820 0.0588 36 1 4.9333 -4.5812 1.3851 37 1 1.6552 -2.1307 -0.0003 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000313451722.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:18:35 Heat of formation + Delta-G solvation = 4.232255 kcal Electronic energy + Delta-G solvation = -20321.968277 eV Core-core repulsion = 17221.386328 eV Total energy + Delta-G solvation = -3100.581949 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 281.116 amu Computer time = 0.49 seconds Orbital eigenvalues (eV) -40.21342 -38.68613 -37.02705 -34.50838 -33.32512 -32.65021 -31.19230 -29.79446 -28.21762 -26.93549 -25.28671 -24.00160 -21.90721 -21.28523 -20.79662 -19.41131 -17.98365 -17.13220 -16.11701 -15.72971 -15.29776 -14.79543 -14.70868 -14.61544 -14.42004 -13.81345 -13.70009 -13.24834 -12.99365 -12.81442 -12.39808 -12.20052 -12.07113 -11.67102 -11.63143 -11.26810 -11.18876 -11.08508 -10.64585 -10.48463 -10.12266 -9.74537 -9.49291 -9.15203 -9.02561 -8.87013 -8.84865 -7.40031 -6.87697 -6.63702 -4.32247 0.82523 1.23396 2.70102 2.88206 3.11454 3.15200 3.21434 3.30315 3.58898 3.94448 4.00905 4.62281 4.67669 4.71030 4.78624 5.03640 5.14803 5.21520 5.42529 5.49188 5.59141 5.73563 5.83927 5.92147 6.22847 6.24189 6.27818 6.39346 6.39929 6.74561 6.79921 7.03624 7.06370 7.10264 7.29748 7.57614 7.74289 7.98524 8.11101 8.18295 8.28942 8.64718 8.74127 8.97191 9.00702 10.29751 Molecular weight = 281.12amu Principal moments of inertia in cm(-1) A = 0.023713 B = 0.003818 C = 0.003380 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1180.478789 B = 7331.154405 C = 8282.962520 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.114 4.114 2 C -0.096 4.096 3 C -0.103 4.103 4 C -0.124 4.124 5 C -0.095 4.095 6 C -0.119 4.119 7 C 0.544 3.456 8 O -0.510 6.510 9 N -0.662 5.662 10 C 0.148 3.852 11 C -0.258 4.258 12 C -0.094 4.094 13 C -0.167 4.167 14 C 0.119 3.881 15 C -0.458 4.458 16 H 0.076 0.924 17 C 0.074 3.926 18 N -0.801 5.801 19 Si 0.912 3.088 20 H -0.266 1.266 21 H -0.279 1.279 22 H -0.264 1.264 23 C -0.207 4.207 24 C -0.063 4.063 25 H 0.071 0.929 26 H 0.069 0.931 27 H 0.066 0.934 28 H 0.124 0.876 29 H 0.127 0.873 30 H 0.126 0.874 31 H 0.397 0.603 32 H 0.089 0.911 33 H 0.092 0.908 34 H 0.122 0.878 35 H 0.279 0.721 36 H 0.107 0.893 37 H 0.137 0.863 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -6.234 16.277 -0.619 17.441 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.171 4.171 2 C -0.096 4.096 3 C -0.121 4.121 4 C -0.142 4.142 5 C -0.114 4.114 6 C -0.122 4.122 7 C 0.331 3.669 8 O -0.385 6.385 9 N -0.306 5.306 10 C 0.057 3.943 11 C -0.279 4.279 12 C -0.113 4.113 13 C -0.187 4.187 14 C 0.116 3.884 15 C -0.489 4.489 16 H 0.094 0.906 17 C -0.143 4.143 18 N -0.427 5.427 19 Si 0.736 3.264 20 H -0.190 1.190 21 H -0.204 1.204 22 H -0.189 1.189 23 C -0.228 4.228 24 C -0.081 4.081 25 H 0.090 0.910 26 H 0.088 0.912 27 H 0.085 0.915 28 H 0.142 0.858 29 H 0.145 0.855 30 H 0.144 0.856 31 H 0.232 0.768 32 H 0.107 0.893 33 H 0.110 0.890 34 H 0.140 0.860 35 H 0.090 0.910 36 H 0.125 0.875 37 H 0.155 0.845 Dipole moment (debyes) X Y Z Total from point charges -6.612 15.315 -0.746 16.698 hybrid contribution 0.157 -0.178 0.271 0.360 sum -6.455 15.138 -0.474 16.463 Atomic orbital electron populations 1.20797 0.90749 1.02995 1.02514 1.19907 0.96429 0.92800 1.00492 1.21200 0.94300 0.97537 0.99040 1.21054 0.94251 0.97892 1.01035 1.21333 0.99890 0.91839 0.98326 1.20091 0.94454 0.93115 1.04583 1.18294 0.82305 0.88764 0.77493 1.90842 1.68103 1.32043 1.47512 1.43357 1.05764 1.09173 1.72328 1.17427 0.92684 0.85597 0.98600 1.20057 0.98721 0.99277 1.09872 1.20483 0.98107 0.93374 0.99336 1.21417 0.96724 0.98373 1.02159 1.17498 0.89902 0.90939 0.90053 1.19521 1.26528 0.90205 1.12601 0.90587 1.25876 0.93186 1.00278 0.94937 1.69792 1.31554 1.21710 1.19690 0.86313 0.79881 0.79181 0.80978 1.19032 1.20373 1.18913 1.20997 1.01157 0.95366 1.05305 1.21216 0.92739 0.98496 0.95686 0.91028 0.91180 0.91483 0.85811 0.85494 0.85614 0.76790 0.89266 0.88964 0.86027 0.90968 0.87546 0.84533 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.11 -0.93 10.01 36.01 0.36 -0.57 16 2 C -0.10 -1.05 5.87 -104.68 -0.61 -1.67 16 3 C -0.10 -0.98 9.69 -39.49 -0.38 -1.36 16 4 C -0.12 -1.20 10.03 -39.64 -0.40 -1.60 16 5 C -0.10 -1.11 9.54 -39.18 -0.37 -1.48 16 6 C -0.12 -1.79 5.87 -104.97 -0.62 -2.40 16 7 C 0.54 10.53 7.50 -12.34 -0.09 10.44 16 8 O -0.51 -12.13 14.06 5.31 0.07 -12.05 16 9 N -0.66 -12.40 5.28 -10.77 -0.06 -12.46 16 10 C 0.15 3.46 6.26 -83.79 -0.52 2.93 16 11 C -0.26 -5.78 9.97 -39.10 -0.39 -6.17 16 12 C -0.09 -2.22 10.02 -39.69 -0.40 -2.62 16 13 C -0.17 -4.45 8.66 -38.84 -0.34 -4.78 16 14 C 0.12 3.33 5.55 -106.85 -0.59 2.74 16 15 C -0.46 -12.79 9.06 -37.74 -0.34 -13.14 16 16 H 0.08 2.06 7.87 -52.48 -0.41 1.64 16 17 C 0.07 1.93 5.25 -17.35 -0.09 1.84 16 18 N -0.80 -21.48 10.81 55.55 0.60 -20.88 16 19 Si 0.91 19.47 29.57 -169.99 -5.03 14.45 16 20 H -0.27 -5.66 7.11 56.52 0.40 -5.26 16 21 H -0.28 -5.75 7.11 56.52 0.40 -5.35 16 22 H -0.26 -5.53 7.11 56.52 0.40 -5.13 16 23 C -0.21 -5.49 8.39 -38.68 -0.32 -5.81 16 24 C -0.06 -0.87 9.24 -39.18 -0.36 -1.23 16 25 H 0.07 0.53 8.14 -51.93 -0.42 0.10 16 26 H 0.07 0.57 8.08 -51.93 -0.42 0.15 16 27 H 0.07 0.44 8.08 -51.93 -0.42 0.02 16 28 H 0.12 0.85 8.06 -52.48 -0.42 0.42 16 29 H 0.13 0.87 8.06 -52.49 -0.42 0.45 16 30 H 0.13 1.21 6.42 -52.48 -0.34 0.87 16 31 H 0.40 5.75 6.87 -40.82 -0.28 5.47 16 32 H 0.09 1.71 8.06 -52.48 -0.42 1.29 16 33 H 0.09 1.92 8.06 -52.49 -0.42 1.49 16 34 H 0.12 3.31 6.18 -52.49 -0.32 2.99 16 35 H 0.28 6.83 8.30 -40.82 -0.34 6.49 16 36 H 0.11 2.91 6.44 -52.49 -0.34 2.57 16 37 H 0.14 1.99 7.65 -52.49 -0.40 1.59 16 LS Contribution 318.24 15.07 4.80 4.80 Total: -1.00 -31.96 318.24 -9.27 -41.23 By element: Atomic # 1 Polarization: 13.99 SS G_CDS: -4.18 Total: 9.81 kcal Atomic # 6 Polarization: -19.41 SS G_CDS: -5.48 Total: -24.89 kcal Atomic # 7 Polarization: -33.89 SS G_CDS: 0.54 Total: -33.34 kcal Atomic # 8 Polarization: -12.13 SS G_CDS: 0.07 Total: -12.05 kcal Atomic # 14 Polarization: 19.47 SS G_CDS: -5.03 Total: 14.45 kcal Total LS contribution 4.80 Total: 4.80 kcal Total: -31.96 -9.27 -41.23 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000313451722.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 45.465 kcal (2) G-P(sol) polarization free energy of solvation -31.958 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 13.506 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.274 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.232 kcal (6) G-S(sol) free energy of system = (1) + (5) 4.232 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.50 seconds