Wall clock time and date at job start Tue Mar 31 2020 05:18:35 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50702 * 1 3 3 C 1.38380 * 119.92981 * 2 1 4 4 C 1.38345 * 120.29642 * 180.02562 * 3 2 1 5 5 C 1.37965 * 120.14505 * 0.25505 * 4 3 2 6 6 C 1.39571 * 119.85461 * 359.49163 * 5 4 3 7 7 C 1.47816 * 120.14966 * 180.27372 * 6 5 4 8 8 O 1.21560 * 119.99917 * 180.23363 * 7 6 5 9 9 N 1.34777 * 119.99925 * 0.23603 * 7 6 5 10 10 C 1.39857 * 120.00281 * 174.86408 * 9 7 6 11 11 C 1.39303 * 119.95300 * 146.35124 * 10 9 7 12 12 C 1.38483 * 120.43050 * 179.97438 * 11 10 9 13 13 C 1.37693 * 120.31972 * 0.02562 * 12 11 10 14 14 C 1.40736 * 119.88893 * 359.97438 * 13 12 11 15 15 C 1.41413 * 120.20645 * 179.97438 * 14 13 12 16 16 H 1.08004 * 119.99885 * 151.79556 * 15 14 13 17 17 C 1.39932 * 119.99970 * 331.79371 * 15 14 13 18 18 N 1.30823 * 119.99985 * 348.99971 * 17 15 14 19 19 Si 1.86803 * 119.99825 * 168.99485 * 17 15 14 20 20 H 1.48503 * 109.47044 * 60.00376 * 19 17 15 21 21 H 1.48498 * 109.47064 * 180.02562 * 19 17 15 22 22 H 1.48501 * 109.47303 * 300.00341 * 19 17 15 23 23 C 1.38263 * 119.94329 * 326.07799 * 10 9 7 24 24 C 1.37934 * 119.92558 * 180.02562 * 2 1 3 25 25 H 1.08996 * 109.47215 * 90.00276 * 1 2 3 26 26 H 1.09000 * 109.46933 * 209.99953 * 1 2 3 27 27 H 1.08996 * 109.46822 * 329.99899 * 1 2 3 28 28 H 1.08003 * 119.85206 * 0.03737 * 3 2 1 29 29 H 1.07997 * 119.92374 * 179.97438 * 4 3 2 30 30 H 1.08007 * 120.07466 * 179.75045 * 5 4 3 31 31 H 0.97002 * 119.99625 * 354.86128 * 9 7 6 32 32 H 1.08007 * 119.78501 * 0.02562 * 11 10 9 33 33 H 1.08000 * 119.83967 * 180.02562 * 12 11 10 34 34 H 1.07996 * 120.05181 * 179.97438 * 13 12 11 35 35 H 0.96999 * 119.99776 * 180.02562 * 18 17 15 36 36 H 1.07995 * 120.16793 * 359.97438 * 23 10 9 37 37 H 1.07999 * 120.07595 * 359.95831 * 24 2 1 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.1974 1.1992 0.0000 4 6 3.5809 1.2081 -0.0005 5 6 4.2813 0.0195 -0.0064 6 6 3.5913 -1.1937 -0.0010 7 6 4.3352 -2.4710 -0.0011 8 8 3.7314 -3.5260 -0.0008 9 7 5.6830 -2.4658 -0.0016 10 6 6.3870 -3.6694 0.1067 11 6 7.6052 -3.8242 -0.5508 12 6 8.3108 -5.0115 -0.4500 13 6 7.8149 -6.0531 0.3018 14 6 6.5854 -5.9113 0.9718 15 6 6.0696 -6.9769 1.7452 16 1 5.4261 -6.7705 2.5877 17 6 6.3929 -8.2987 1.4190 18 7 6.9881 -8.5657 0.2850 19 14 5.9749 -9.6818 2.6030 20 1 4.5071 -9.7161 2.8257 21 1 6.4191 -10.9769 2.0279 22 1 6.6667 -9.4520 3.8968 23 6 5.8753 -4.7018 0.8709 24 6 2.1951 -1.1954 -0.0005 25 1 -0.3633 0.0000 -1.0276 26 1 -0.3633 -0.8900 0.5138 27 1 -0.3633 0.8900 0.5138 28 1 1.6539 2.1325 0.0006 29 1 4.1136 2.1475 -0.0009 30 1 5.3614 0.0278 -0.0109 31 1 6.1647 -1.6272 -0.0771 32 1 8.0025 -3.0126 -1.1425 33 1 9.2546 -5.1210 -0.9634 34 1 8.3686 -6.9773 0.3772 35 1 7.2118 -9.4820 0.0588 36 1 4.9333 -4.5812 1.3851 37 1 1.6552 -2.1307 -0.0003 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000313451722.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:18:35 Heat of formation + Delta-G solvation = -14.251674 kcal Electronic energy + Delta-G solvation = -20322.769801 eV Core-core repulsion = 17221.386328 eV Total energy + Delta-G solvation = -3101.383472 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 281.116 amu Computer time = 0.53 seconds Orbital eigenvalues (eV) -41.60675 -39.92541 -38.79928 -36.30245 -34.99098 -33.74835 -32.19603 -31.77808 -29.94014 -27.77399 -27.28850 -25.29623 -23.06714 -22.75080 -22.61287 -20.94445 -19.67977 -18.57643 -17.46249 -17.24024 -16.84631 -16.51055 -16.15018 -15.99186 -15.75994 -15.02470 -14.85829 -14.63727 -14.54454 -14.07769 -13.93814 -13.65437 -13.16321 -13.07683 -12.91327 -12.83774 -12.60912 -12.53891 -12.24536 -12.02524 -11.98079 -11.62593 -11.29093 -10.99317 -10.69938 -9.98607 -9.70938 -9.39938 -8.76191 -8.59975 -6.41409 -0.21128 0.36473 0.90981 0.98798 1.34734 1.47286 1.49306 1.89474 2.10994 2.21272 2.71815 2.85921 3.61597 3.70375 3.81101 3.95430 4.15185 4.35803 4.36869 4.43909 4.58345 4.67935 4.81858 4.87863 4.95486 4.99762 5.06676 5.08770 5.16667 5.25108 5.29325 5.34951 5.40617 5.56063 5.72324 5.81827 5.95180 6.04213 6.08101 6.31597 6.56063 6.65892 6.91172 6.97288 7.21413 8.35409 Molecular weight = 281.12amu Principal moments of inertia in cm(-1) A = 0.023713 B = 0.003818 C = 0.003380 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1180.478789 B = 7331.154405 C = 8282.962520 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.114 4.114 2 C -0.099 4.099 3 C -0.089 4.089 4 C -0.116 4.116 5 C -0.093 4.093 6 C -0.147 4.147 7 C 0.541 3.459 8 O -0.568 6.568 9 N -0.650 5.650 10 C 0.153 3.847 11 C -0.245 4.245 12 C -0.091 4.091 13 C -0.192 4.192 14 C 0.089 3.911 15 C -0.504 4.504 16 H 0.065 0.935 17 C 0.033 3.967 18 N -0.831 5.831 19 Si 0.987 3.013 20 H -0.266 1.266 21 H -0.261 1.261 22 H -0.256 1.256 23 C -0.235 4.235 24 C -0.087 4.087 25 H 0.081 0.919 26 H 0.061 0.939 27 H 0.091 0.909 28 H 0.163 0.837 29 H 0.167 0.833 30 H 0.147 0.853 31 H 0.420 0.580 32 H 0.135 0.865 33 H 0.127 0.873 34 H 0.108 0.892 35 H 0.288 0.712 36 H 0.082 0.918 37 H 0.111 0.889 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.882 19.599 -1.164 20.495 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.170 4.170 2 C -0.099 4.099 3 C -0.107 4.107 4 C -0.134 4.134 5 C -0.112 4.112 6 C -0.150 4.150 7 C 0.331 3.669 8 O -0.448 6.448 9 N -0.296 5.296 10 C 0.060 3.940 11 C -0.266 4.266 12 C -0.110 4.110 13 C -0.212 4.212 14 C 0.086 3.914 15 C -0.534 4.534 16 H 0.083 0.917 17 C -0.181 4.181 18 N -0.458 5.458 19 Si 0.807 3.193 20 H -0.191 1.191 21 H -0.185 1.185 22 H -0.180 1.180 23 C -0.257 4.257 24 C -0.106 4.106 25 H 0.099 0.901 26 H 0.080 0.920 27 H 0.110 0.890 28 H 0.180 0.820 29 H 0.185 0.815 30 H 0.164 0.836 31 H 0.260 0.740 32 H 0.153 0.847 33 H 0.145 0.855 34 H 0.126 0.874 35 H 0.099 0.901 36 H 0.100 0.900 37 H 0.129 0.871 Dipole moment (debyes) X Y Z Total from point charges -6.236 18.703 -1.304 19.758 hybrid contribution 0.003 -0.969 0.358 1.033 sum -6.234 17.734 -0.946 18.822 Atomic orbital electron populations 1.20863 0.88944 1.03839 1.03386 1.20208 0.97846 0.92212 0.99677 1.21711 0.94657 0.98188 0.96163 1.21527 0.94505 0.98440 0.98901 1.21588 1.01036 0.91120 0.97408 1.19815 0.94574 0.92007 1.08589 1.19110 0.82284 0.89864 0.75621 1.90809 1.69156 1.34664 1.50143 1.43218 1.05776 1.08731 1.71887 1.17541 0.93129 0.86342 0.97009 1.20508 0.97581 0.99939 1.08603 1.20878 0.99263 0.92780 0.98089 1.21394 0.96654 0.99157 1.03969 1.17838 0.90914 0.91658 0.91005 1.19751 1.28306 0.91909 1.13454 0.91711 1.26743 0.92593 1.02185 0.96553 1.69842 1.32115 1.22815 1.20988 0.85202 0.79420 0.76049 0.78654 1.19118 1.18504 1.18034 1.20950 1.00747 0.96794 1.07228 1.21220 0.92702 0.99073 0.97597 0.90066 0.92041 0.88981 0.81962 0.81532 0.83559 0.74034 0.84745 0.85520 0.87372 0.90115 0.90017 0.87087 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.11 -1.65 10.01 71.24 0.71 -0.93 16 2 C -0.10 -2.00 5.87 -19.90 -0.12 -2.11 16 3 C -0.09 -1.31 9.69 22.33 0.22 -1.09 16 4 C -0.12 -1.70 10.03 22.23 0.22 -1.48 16 5 C -0.09 -1.92 9.54 22.53 0.21 -1.70 16 6 C -0.15 -4.42 5.87 -20.09 -0.12 -4.53 16 7 C 0.54 21.82 7.50 86.78 0.65 22.47 16 8 O -0.57 -29.27 14.06 -3.90 -0.05 -29.32 16 9 N -0.65 -24.29 5.28 -306.27 -1.62 -25.91 16 10 C 0.15 7.20 6.26 38.12 0.24 7.44 16 11 C -0.25 -10.56 9.97 22.58 0.23 -10.34 16 12 C -0.09 -4.25 10.02 22.20 0.22 -4.03 16 13 C -0.19 -10.57 8.66 22.75 0.20 -10.37 16 14 C 0.09 5.26 5.55 -21.31 -0.12 5.14 16 15 C -0.50 -30.09 9.06 23.46 0.21 -29.88 16 16 H 0.06 3.82 7.87 -2.91 -0.02 3.79 16 17 C 0.03 1.79 5.25 85.25 0.45 2.23 16 18 N -0.83 -46.18 10.81 21.82 0.24 -45.94 16 19 Si 0.99 41.24 29.57 68.60 2.03 43.27 16 20 H -0.27 -11.07 7.11 99.48 0.71 -10.36 16 21 H -0.26 -10.07 7.11 99.48 0.71 -9.36 16 22 H -0.26 -10.28 7.11 99.48 0.71 -9.57 16 23 C -0.24 -13.29 8.39 22.86 0.19 -13.10 16 24 C -0.09 -2.49 9.24 22.53 0.21 -2.28 16 25 H 0.08 1.03 8.14 -2.39 -0.02 1.01 16 26 H 0.06 0.99 8.08 -2.39 -0.02 0.97 16 27 H 0.09 0.88 8.08 -2.39 -0.02 0.86 16 28 H 0.16 1.20 8.06 -2.91 -0.02 1.17 16 29 H 0.17 1.20 8.06 -2.91 -0.02 1.18 16 30 H 0.15 2.28 6.42 -2.91 -0.02 2.26 16 31 H 0.42 11.31 6.87 -92.71 -0.64 10.68 16 32 H 0.13 4.57 8.06 -2.91 -0.02 4.55 16 33 H 0.13 4.95 8.06 -2.91 -0.02 4.92 16 34 H 0.11 6.15 6.18 -2.91 -0.02 6.13 16 35 H 0.29 14.41 8.30 -92.71 -0.77 13.64 16 36 H 0.08 4.90 6.44 -2.91 -0.02 4.89 16 37 H 0.11 3.62 7.65 -2.91 -0.02 3.60 16 Total: -1.00 -76.77 318.24 4.66 -72.11 By element: Atomic # 1 Polarization: 29.89 SS G_CDS: 0.46 Total: 30.35 kcal Atomic # 6 Polarization: -48.16 SS G_CDS: 3.61 Total: -44.56 kcal Atomic # 7 Polarization: -70.47 SS G_CDS: -1.38 Total: -71.85 kcal Atomic # 8 Polarization: -29.27 SS G_CDS: -0.05 Total: -29.32 kcal Atomic # 14 Polarization: 41.24 SS G_CDS: 2.03 Total: 43.27 kcal Total: -76.77 4.66 -72.11 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000313451722.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 57.858 kcal (2) G-P(sol) polarization free energy of solvation -76.773 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -18.915 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.664 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -72.110 kcal (6) G-S(sol) free energy of system = (1) + (5) -14.252 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.53 seconds