Wall clock time and date at job start Tue Mar 31 2020 05:32:17 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50710 * 1 3 3 C 1.37476 * 122.44498 * 2 1 4 4 C 1.36647 * 113.29097 * 180.02562 * 3 2 1 5 5 C 1.46588 * 125.45349 * 180.02562 * 4 3 2 6 6 O 1.21700 * 120.00047 * 0.02562 * 5 4 3 7 7 N 1.34777 * 119.99641 * 179.97438 * 5 4 3 8 8 C 1.46502 * 119.99691 * 179.97438 * 7 5 4 9 9 C 1.52996 * 109.46827 * 179.97438 * 8 7 5 10 10 C 1.52992 * 109.47484 * 299.99919 * 9 8 7 11 11 C 1.52997 * 109.47089 * 60.00481 * 9 8 7 12 12 C 1.50708 * 109.46933 * 180.02562 * 9 8 7 13 13 H 1.08003 * 120.00083 * 359.97438 * 12 9 8 14 14 C 1.37872 * 119.99995 * 180.02562 * 12 9 8 15 15 N 1.31513 * 120.00118 * 0.02562 * 14 12 9 16 16 Si 1.86798 * 119.99990 * 179.97438 * 14 12 9 17 17 H 1.48506 * 109.47182 * 90.00212 * 16 14 12 18 18 H 1.48501 * 109.47203 * 210.00239 * 16 14 12 19 19 H 1.48503 * 109.47181 * 330.00189 * 16 14 12 20 20 S 1.75825 * 109.08825 * 359.97438 * 4 3 2 21 21 C 1.33815 * 122.44997 * 180.02562 * 2 1 3 22 22 C 1.50694 * 124.52169 * 0.24390 * 21 2 1 23 23 H 1.09002 * 109.46863 * 269.97606 * 1 2 3 24 24 H 1.08996 * 109.47233 * 29.97958 * 1 2 3 25 25 H 1.09000 * 109.46765 * 149.97791 * 1 2 3 26 26 H 1.08003 * 123.35093 * 359.97438 * 3 2 1 27 27 H 0.96996 * 119.99934 * 359.97438 * 7 5 4 28 28 H 1.08998 * 109.47324 * 300.00258 * 8 7 5 29 29 H 1.08997 * 109.46847 * 59.99998 * 8 7 5 30 30 H 1.09003 * 109.47013 * 60.00368 * 10 9 8 31 31 H 1.09007 * 109.47017 * 179.97438 * 10 9 8 32 32 H 1.08997 * 109.47382 * 299.99880 * 10 9 8 33 33 H 1.09000 * 109.47709 * 59.99506 * 11 9 8 34 34 H 1.09007 * 109.47370 * 179.97438 * 11 9 8 35 35 H 1.09003 * 109.47035 * 299.99404 * 11 9 8 36 36 H 0.97005 * 120.00272 * 179.97438 * 15 14 12 37 37 H 1.09002 * 109.47026 * 179.71922 * 22 21 2 38 38 H 1.08999 * 109.47790 * 299.72306 * 22 21 2 39 39 H 1.09002 * 109.47337 * 59.72579 * 22 21 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5071 0.0000 0.0000 3 6 2.2446 1.1602 0.0000 4 6 3.5937 0.9428 -0.0006 5 6 4.6231 1.9864 -0.0002 6 8 4.3001 3.1597 0.0012 7 7 5.9273 1.6464 -0.0003 8 6 6.9561 2.6894 -0.0004 9 6 8.3412 2.0394 0.0001 10 6 8.4963 1.1704 1.2496 11 6 8.4968 1.1695 -1.2488 12 6 9.3995 3.1123 0.0006 13 1 9.1129 4.1536 0.0001 14 6 10.7337 2.7646 0.0006 15 7 11.0827 1.4966 -0.0003 16 14 12.0455 4.0944 0.0004 17 1 12.3932 4.4470 1.4005 18 1 13.2563 3.5953 -0.6997 19 1 11.5299 5.2983 -0.6997 20 16 3.8970 -0.7891 -0.0003 21 6 2.2251 -1.1292 -0.0005 22 6 1.6356 -2.5161 -0.0064 23 1 -0.3633 -0.0004 1.0277 24 1 -0.3633 0.8901 -0.5135 25 1 -0.3633 -0.8898 -0.5142 26 1 1.8019 2.1453 -0.0004 27 1 6.1847 0.7112 -0.0002 28 1 6.8454 3.3089 -0.8904 29 1 6.8455 3.3089 0.8895 30 1 7.7308 0.3943 1.2497 31 1 9.4829 0.7069 1.2497 32 1 8.3855 1.7901 2.1394 33 1 8.3863 1.7886 -2.1391 34 1 9.4837 0.7067 -1.2487 35 1 7.7313 0.3934 -1.2487 36 1 12.0214 1.2519 -0.0007 37 1 2.4393 -3.2524 -0.0106 38 1 1.0213 -2.6537 0.8834 39 1 1.0199 -2.6454 -0.8965 RHF calculation, no. of doubly occupied orbitals= 50 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000315332566.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:32:17 Heat of formation + Delta-G solvation = -26.468224 kcal Electronic energy + Delta-G solvation = -19614.406030 eV Core-core repulsion = 16647.936759 eV Total energy + Delta-G solvation = -2966.469270 eV No. of doubly occupied orbitals = 50 Molecular weight (most abundant/longest-lived isotopes) = 281.119 amu Computer time = 0.34 seconds Orbital eigenvalues (eV) -39.48386 -38.29597 -36.32009 -33.32709 -32.31998 -30.86659 -29.76715 -26.69169 -25.73479 -25.42590 -24.72261 -23.04882 -20.43356 -19.03347 -18.46983 -17.86046 -16.23837 -15.84080 -15.14139 -15.02769 -14.70675 -14.42827 -14.13226 -13.62780 -13.14635 -13.04453 -12.92401 -12.87405 -12.73783 -12.21885 -11.93714 -11.83410 -11.80736 -11.38075 -11.21170 -10.87224 -10.86996 -10.69595 -10.39637 -10.21204 -9.73261 -9.64748 -9.31374 -8.80150 -8.71935 -8.51768 -8.40655 -8.28753 -6.02378 -4.12544 0.54031 1.45761 1.87022 2.34546 3.28588 3.35519 3.39277 3.51901 3.66887 4.40196 4.62280 4.88412 4.97884 5.21791 5.21931 5.24430 5.29684 5.45825 5.46591 5.64029 5.77643 5.89016 6.18073 6.27812 6.30771 6.39062 6.49664 6.74336 6.81666 6.92087 6.97378 7.00842 7.33942 7.54737 7.68833 7.97283 7.99867 8.13428 8.37132 8.59397 8.87913 9.53287 10.99133 Molecular weight = 281.12amu Principal moments of inertia in cm(-1) A = 0.038332 B = 0.003704 C = 0.003462 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 730.279011 B = 7556.775883 C = 8085.394207 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.090 4.090 2 C -0.125 4.125 3 C -0.058 4.058 4 C -0.253 4.253 5 C 0.578 3.422 6 O -0.541 6.541 7 N -0.711 5.711 8 C 0.132 3.868 9 C 0.055 3.945 10 C -0.131 4.131 11 C -0.131 4.131 12 C -0.506 4.506 13 H 0.058 0.942 14 C 0.066 3.934 15 N -0.886 5.886 16 Si 0.894 3.106 17 H -0.281 1.281 18 H -0.287 1.287 19 H -0.274 1.274 20 S 0.201 5.799 21 C -0.209 4.209 22 C -0.080 4.080 23 H 0.068 0.932 24 H 0.067 0.933 25 H 0.065 0.935 26 H 0.151 0.849 27 H 0.396 0.604 28 H 0.058 0.942 29 H 0.058 0.942 30 H 0.005 0.995 31 H 0.087 0.913 32 H 0.028 0.972 33 H 0.027 0.973 34 H 0.087 0.913 35 H 0.005 0.995 36 H 0.260 0.740 37 H 0.067 0.933 38 H 0.076 0.924 39 H 0.077 0.923 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -17.171 -9.189 -0.005 19.476 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.149 4.149 2 C -0.138 4.138 3 C -0.091 4.091 4 C -0.374 4.374 5 C 0.363 3.637 6 O -0.421 6.421 7 N -0.361 5.361 8 C 0.009 3.991 9 C 0.054 3.946 10 C -0.189 4.189 11 C -0.189 4.189 12 C -0.545 4.545 13 H 0.076 0.924 14 C -0.135 4.135 15 N -0.524 5.524 16 Si 0.722 3.278 17 H -0.207 1.207 18 H -0.213 1.213 19 H -0.199 1.199 20 S 0.470 5.530 21 C -0.328 4.328 22 C -0.139 4.139 23 H 0.087 0.913 24 H 0.086 0.914 25 H 0.084 0.916 26 H 0.168 0.832 27 H 0.231 0.769 28 H 0.076 0.924 29 H 0.076 0.924 30 H 0.024 0.976 31 H 0.105 0.895 32 H 0.047 0.953 33 H 0.047 0.953 34 H 0.105 0.895 35 H 0.024 0.976 36 H 0.070 0.930 37 H 0.086 0.914 38 H 0.095 0.905 39 H 0.095 0.905 Dipole moment (debyes) X Y Z Total from point charges -15.835 -9.362 -0.011 18.395 hybrid contribution -0.406 1.126 0.016 1.197 sum -16.241 -8.235 0.006 18.210 Atomic orbital electron populations 1.20472 0.89646 1.02646 1.02163 1.18639 0.97682 0.91303 1.06154 1.20580 0.91025 0.99718 0.97782 1.24745 0.98264 0.97008 1.17371 1.17007 0.82105 0.87229 0.77335 1.90790 1.81857 1.18169 1.51293 1.46232 1.05284 1.11419 1.73141 1.21797 0.87362 0.89079 1.00812 1.18373 0.89003 0.94262 0.92920 1.21840 1.01801 0.97669 0.97596 1.21840 1.01811 0.97672 0.97590 1.20975 0.90258 0.92298 1.50925 0.92362 1.24877 0.98448 0.95413 0.94757 1.69803 1.16759 1.15329 1.50536 0.86560 0.81111 0.82019 0.78107 1.20706 1.21267 1.19890 1.83137 1.02925 0.98695 1.68281 1.24014 0.98649 1.00178 1.09998 1.20323 1.00764 0.89816 1.02949 0.91331 0.91450 0.91640 0.83155 0.76906 0.92368 0.92375 0.97614 0.89470 0.95330 0.95332 0.89457 0.97604 0.92989 0.91364 0.90514 0.90486 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.09 -0.73 9.84 36.01 0.35 -0.38 16 2 C -0.12 -1.41 5.78 -106.45 -0.62 -2.03 16 3 C -0.06 -0.80 9.80 -40.43 -0.40 -1.20 16 4 C -0.25 -3.94 6.45 -36.79 -0.24 -4.17 16 5 C 0.58 11.01 7.78 -12.89 -0.10 10.91 16 6 O -0.54 -11.96 16.84 5.19 0.09 -11.87 16 7 N -0.71 -13.57 4.95 -61.65 -0.31 -13.87 16 8 C 0.13 2.87 4.50 -4.04 -0.02 2.86 16 9 C 0.06 1.29 0.50 -155.66 -0.08 1.22 16 10 C -0.13 -3.00 8.08 37.15 0.30 -2.70 16 11 C -0.13 -3.00 8.08 37.16 0.30 -2.70 16 12 C -0.51 -13.32 8.01 -34.44 -0.28 -13.59 16 13 H 0.06 1.54 7.74 -52.48 -0.41 1.14 16 14 C 0.07 1.75 5.15 -17.82 -0.09 1.65 16 15 N -0.89 -23.60 9.35 55.43 0.52 -23.08 16 16 Si 0.89 20.75 29.54 -169.99 -5.02 15.73 16 17 H -0.28 -6.52 7.11 56.52 0.40 -6.12 16 18 H -0.29 -6.63 7.11 56.52 0.40 -6.23 16 19 H -0.27 -6.37 7.11 56.52 0.40 -5.96 16 20 S 0.20 2.49 22.08 -107.50 -2.37 0.12 16 21 C -0.21 -2.26 6.28 -35.86 -0.23 -2.48 16 22 C -0.08 -0.60 9.38 36.00 0.34 -0.26 16 23 H 0.07 0.50 8.14 -51.93 -0.42 0.08 16 24 H 0.07 0.51 8.13 -51.93 -0.42 0.09 16 25 H 0.06 0.44 7.26 -51.93 -0.38 0.06 16 26 H 0.15 2.01 8.06 -52.48 -0.42 1.59 16 27 H 0.40 6.96 5.28 -40.82 -0.22 6.74 16 28 H 0.06 1.32 8.14 -51.93 -0.42 0.90 16 29 H 0.06 1.32 8.14 -51.93 -0.42 0.90 16 30 H 0.00 0.10 6.86 -51.93 -0.36 -0.26 16 31 H 0.09 2.18 6.07 -51.92 -0.32 1.87 16 32 H 0.03 0.64 8.14 -51.93 -0.42 0.22 16 33 H 0.03 0.64 8.14 -51.93 -0.42 0.22 16 34 H 0.09 2.18 6.07 -51.92 -0.32 1.87 16 35 H 0.00 0.10 6.86 -51.93 -0.36 -0.25 16 36 H 0.26 6.69 8.31 -40.82 -0.34 6.35 16 37 H 0.07 0.46 8.11 -51.93 -0.42 0.04 16 38 H 0.08 0.49 8.14 -51.93 -0.42 0.06 16 39 H 0.08 0.48 7.88 -51.93 -0.41 0.08 16 LS Contribution 329.20 15.07 4.96 4.96 Total: -1.00 -28.95 329.20 -8.57 -37.52 By element: Atomic # 1 Polarization: 9.05 SS G_CDS: -5.69 Total: 3.37 kcal Atomic # 6 Polarization: -12.13 SS G_CDS: -0.75 Total: -12.87 kcal Atomic # 7 Polarization: -37.16 SS G_CDS: 0.21 Total: -36.95 kcal Atomic # 8 Polarization: -11.96 SS G_CDS: 0.09 Total: -11.87 kcal Atomic # 14 Polarization: 20.75 SS G_CDS: -5.02 Total: 15.73 kcal Atomic # 16 Polarization: 2.49 SS G_CDS: -2.37 Total: 0.12 kcal Total LS contribution 4.96 Total: 4.96 kcal Total: -28.95 -8.57 -37.52 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000315332566.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 11.048 kcal (2) G-P(sol) polarization free energy of solvation -28.948 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -17.900 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.568 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.516 kcal (6) G-S(sol) free energy of system = (1) + (5) -26.468 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.34 seconds