Wall clock time and date at job start Tue Mar 31 2020 05:32:16 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50710 * 1 3 3 C 1.37476 * 122.44498 * 2 1 4 4 C 1.36647 * 113.29097 * 180.02562 * 3 2 1 5 5 C 1.46588 * 125.45349 * 180.02562 * 4 3 2 6 6 O 1.21700 * 120.00047 * 0.02562 * 5 4 3 7 7 N 1.34777 * 119.99641 * 179.97438 * 5 4 3 8 8 C 1.46502 * 119.99691 * 179.97438 * 7 5 4 9 9 C 1.52996 * 109.46827 * 179.97438 * 8 7 5 10 10 C 1.52992 * 109.47484 * 299.99919 * 9 8 7 11 11 C 1.52997 * 109.47089 * 60.00481 * 9 8 7 12 12 C 1.50708 * 109.46933 * 180.02562 * 9 8 7 13 13 H 1.08003 * 120.00083 * 359.97438 * 12 9 8 14 14 C 1.37872 * 119.99995 * 180.02562 * 12 9 8 15 15 N 1.31513 * 120.00118 * 0.02562 * 14 12 9 16 16 Si 1.86798 * 119.99990 * 179.97438 * 14 12 9 17 17 H 1.48506 * 109.47182 * 90.00212 * 16 14 12 18 18 H 1.48501 * 109.47203 * 210.00239 * 16 14 12 19 19 H 1.48503 * 109.47181 * 330.00189 * 16 14 12 20 20 S 1.75825 * 109.08825 * 359.97438 * 4 3 2 21 21 C 1.33815 * 122.44997 * 180.02562 * 2 1 3 22 22 C 1.50694 * 124.52169 * 0.24390 * 21 2 1 23 23 H 1.09002 * 109.46863 * 269.97606 * 1 2 3 24 24 H 1.08996 * 109.47233 * 29.97958 * 1 2 3 25 25 H 1.09000 * 109.46765 * 149.97791 * 1 2 3 26 26 H 1.08003 * 123.35093 * 359.97438 * 3 2 1 27 27 H 0.96996 * 119.99934 * 359.97438 * 7 5 4 28 28 H 1.08998 * 109.47324 * 300.00258 * 8 7 5 29 29 H 1.08997 * 109.46847 * 59.99998 * 8 7 5 30 30 H 1.09003 * 109.47013 * 60.00368 * 10 9 8 31 31 H 1.09007 * 109.47017 * 179.97438 * 10 9 8 32 32 H 1.08997 * 109.47382 * 299.99880 * 10 9 8 33 33 H 1.09000 * 109.47709 * 59.99506 * 11 9 8 34 34 H 1.09007 * 109.47370 * 179.97438 * 11 9 8 35 35 H 1.09003 * 109.47035 * 299.99404 * 11 9 8 36 36 H 0.97005 * 120.00272 * 179.97438 * 15 14 12 37 37 H 1.09002 * 109.47026 * 179.71922 * 22 21 2 38 38 H 1.08999 * 109.47790 * 299.72306 * 22 21 2 39 39 H 1.09002 * 109.47337 * 59.72579 * 22 21 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5071 0.0000 0.0000 3 6 2.2446 1.1602 0.0000 4 6 3.5937 0.9428 -0.0006 5 6 4.6231 1.9864 -0.0002 6 8 4.3001 3.1597 0.0012 7 7 5.9273 1.6464 -0.0003 8 6 6.9561 2.6894 -0.0004 9 6 8.3412 2.0394 0.0001 10 6 8.4963 1.1704 1.2496 11 6 8.4968 1.1695 -1.2488 12 6 9.3995 3.1123 0.0006 13 1 9.1129 4.1536 0.0001 14 6 10.7337 2.7646 0.0006 15 7 11.0827 1.4966 -0.0003 16 14 12.0455 4.0944 0.0004 17 1 12.3932 4.4470 1.4005 18 1 13.2563 3.5953 -0.6997 19 1 11.5299 5.2983 -0.6997 20 16 3.8970 -0.7891 -0.0003 21 6 2.2251 -1.1292 -0.0005 22 6 1.6356 -2.5161 -0.0064 23 1 -0.3633 -0.0004 1.0277 24 1 -0.3633 0.8901 -0.5135 25 1 -0.3633 -0.8898 -0.5142 26 1 1.8019 2.1453 -0.0004 27 1 6.1847 0.7112 -0.0002 28 1 6.8454 3.3089 -0.8904 29 1 6.8455 3.3089 0.8895 30 1 7.7308 0.3943 1.2497 31 1 9.4829 0.7069 1.2497 32 1 8.3855 1.7901 2.1394 33 1 8.3863 1.7886 -2.1391 34 1 9.4837 0.7067 -1.2487 35 1 7.7313 0.3934 -1.2487 36 1 12.0214 1.2519 -0.0007 37 1 2.4393 -3.2524 -0.0106 38 1 1.0213 -2.6537 0.8834 39 1 1.0199 -2.6454 -0.8965 RHF calculation, no. of doubly occupied orbitals= 50 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000315332566.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:32:16 Heat of formation + Delta-G solvation = -42.349674 kcal Electronic energy + Delta-G solvation = -19615.094701 eV Core-core repulsion = 16647.936759 eV Total energy + Delta-G solvation = -2967.157942 eV No. of doubly occupied orbitals = 50 Molecular weight (most abundant/longest-lived isotopes) = 281.119 amu Computer time = 0.42 seconds Orbital eigenvalues (eV) -40.92491 -39.36962 -38.09092 -35.09097 -33.36552 -32.62099 -30.49964 -28.04066 -27.60868 -27.28478 -26.02288 -24.21871 -21.79650 -20.71970 -19.71339 -19.04282 -17.82974 -17.34247 -16.67887 -16.50862 -16.44810 -15.40524 -15.36613 -14.85678 -14.71968 -14.57525 -14.10776 -14.03318 -13.58585 -13.43796 -13.25474 -13.13461 -12.77019 -12.71288 -12.66177 -12.62749 -12.57012 -12.28521 -12.14664 -11.79828 -11.53045 -11.38332 -11.10711 -10.73848 -10.42138 -10.14349 -9.62137 -9.33659 -8.03427 -6.19511 -0.51511 0.45751 0.90468 1.33172 1.42837 1.45476 1.53930 2.13925 2.17645 2.47661 3.20215 3.76103 3.87730 4.17593 4.26066 4.36657 4.45188 4.59348 4.65389 4.72324 4.75098 4.89677 4.91092 4.95058 5.00408 5.06362 5.09489 5.12604 5.14547 5.26492 5.39137 5.48638 5.55870 5.63038 5.65721 6.10290 6.16922 6.40253 6.48157 6.83582 7.09819 7.48206 8.95912 Molecular weight = 281.12amu Principal moments of inertia in cm(-1) A = 0.038332 B = 0.003704 C = 0.003462 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 730.279011 B = 7556.775883 C = 8085.394207 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.088 4.088 2 C -0.139 4.139 3 C -0.049 4.049 4 C -0.300 4.300 5 C 0.579 3.421 6 O -0.583 6.583 7 N -0.707 5.707 8 C 0.146 3.854 9 C 0.051 3.949 10 C -0.121 4.121 11 C -0.121 4.121 12 C -0.530 4.530 13 H 0.046 0.954 14 C 0.029 3.971 15 N -0.899 5.899 16 Si 0.947 3.053 17 H -0.279 1.279 18 H -0.282 1.282 19 H -0.276 1.276 20 S 0.215 5.785 21 C -0.188 4.188 22 C -0.084 4.084 23 H 0.079 0.921 24 H 0.069 0.931 25 H 0.085 0.915 26 H 0.146 0.854 27 H 0.404 0.596 28 H 0.043 0.957 29 H 0.043 0.957 30 H 0.032 0.968 31 H 0.066 0.934 32 H 0.020 0.980 33 H 0.020 0.980 34 H 0.066 0.934 35 H 0.032 0.968 36 H 0.261 0.739 37 H 0.076 0.924 38 H 0.095 0.905 39 H 0.096 0.904 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -18.879 -11.224 -0.008 21.964 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.147 4.147 2 C -0.151 4.151 3 C -0.084 4.084 4 C -0.420 4.420 5 C 0.367 3.633 6 O -0.466 6.466 7 N -0.357 5.357 8 C 0.023 3.977 9 C 0.050 3.950 10 C -0.179 4.179 11 C -0.179 4.179 12 C -0.569 4.569 13 H 0.064 0.936 14 C -0.171 4.171 15 N -0.537 5.537 16 Si 0.774 3.226 17 H -0.205 1.205 18 H -0.207 1.207 19 H -0.201 1.201 20 S 0.484 5.516 21 C -0.308 4.308 22 C -0.142 4.142 23 H 0.097 0.903 24 H 0.088 0.912 25 H 0.104 0.896 26 H 0.163 0.837 27 H 0.241 0.759 28 H 0.062 0.938 29 H 0.062 0.938 30 H 0.050 0.950 31 H 0.085 0.915 32 H 0.039 0.961 33 H 0.039 0.961 34 H 0.085 0.915 35 H 0.051 0.949 36 H 0.071 0.929 37 H 0.095 0.905 38 H 0.114 0.886 39 H 0.115 0.885 Dipole moment (debyes) X Y Z Total from point charges -17.543 -11.427 -0.014 20.936 hybrid contribution 0.020 1.673 0.018 1.674 sum -17.523 -9.753 0.004 20.055 Atomic orbital electron populations 1.20550 0.87107 1.03835 1.03209 1.18894 0.99418 0.90336 1.06411 1.20815 0.90741 1.00705 0.96114 1.24397 0.97819 0.98078 1.21709 1.17453 0.82373 0.87594 0.75905 1.90751 1.82443 1.20188 1.53177 1.46037 1.05065 1.11103 1.73528 1.21394 0.87504 0.89374 0.99417 1.18376 0.89091 0.93983 0.93557 1.21683 1.01446 0.97912 0.96851 1.21683 1.01454 0.97916 0.96847 1.21243 0.91536 0.92522 1.51553 0.93578 1.25457 0.99933 0.97151 0.94547 1.69901 1.17050 1.16275 1.50495 0.85724 0.79016 0.79833 0.78016 1.20451 1.20738 1.20083 1.83014 1.04545 0.95975 1.68081 1.24554 0.97535 1.01852 1.06893 1.20537 1.01472 0.87465 1.04705 0.90278 0.91202 0.89609 0.83653 0.75936 0.93843 0.93833 0.94951 0.91504 0.96109 0.96106 0.91491 0.94942 0.92928 0.90466 0.88635 0.88538 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.09 -1.14 9.84 71.24 0.70 -0.44 16 2 C -0.14 -2.79 5.78 -21.05 -0.12 -2.92 16 3 C -0.05 -1.32 9.80 21.72 0.21 -1.11 16 4 C -0.30 -9.22 6.45 24.08 0.16 -9.06 16 5 C 0.58 22.47 7.78 86.42 0.67 23.15 16 6 O -0.58 -26.71 16.84 -4.35 -0.07 -26.78 16 7 N -0.71 -27.20 4.95 -467.18 -2.31 -29.52 16 8 C 0.15 6.56 4.50 86.38 0.39 6.95 16 9 C 0.05 2.41 0.50 -52.93 -0.03 2.38 16 10 C -0.12 -5.53 8.08 71.98 0.58 -4.95 16 11 C -0.12 -5.53 8.08 71.98 0.58 -4.95 16 12 C -0.53 -28.43 8.01 25.60 0.21 -28.22 16 13 H 0.05 2.52 7.74 -2.91 -0.02 2.50 16 14 C 0.03 1.54 5.15 84.65 0.44 1.97 16 15 N -0.90 -48.07 9.35 21.45 0.20 -47.87 16 16 Si 0.95 42.83 29.54 68.60 2.03 44.85 16 17 H -0.28 -12.43 7.11 99.48 0.71 -11.72 16 18 H -0.28 -12.44 7.11 99.48 0.71 -11.73 16 19 H -0.28 -12.46 7.11 99.48 0.71 -11.75 16 20 S 0.21 4.93 22.08 -56.49 -1.25 3.68 16 21 C -0.19 -3.47 6.28 24.68 0.15 -3.32 16 22 C -0.08 -0.87 9.38 71.23 0.67 -0.20 16 23 H 0.08 0.88 8.14 -2.39 -0.02 0.86 16 24 H 0.07 0.88 8.13 -2.39 -0.02 0.86 16 25 H 0.09 0.77 7.26 -2.39 -0.02 0.75 16 26 H 0.15 3.91 8.06 -2.91 -0.02 3.89 16 27 H 0.40 13.95 5.28 -92.71 -0.49 13.46 16 28 H 0.04 2.05 8.14 -2.39 -0.02 2.03 16 29 H 0.04 2.05 8.14 -2.39 -0.02 2.03 16 30 H 0.03 1.26 6.86 -2.39 -0.02 1.24 16 31 H 0.07 3.35 6.07 -2.38 -0.01 3.33 16 32 H 0.02 0.93 8.14 -2.39 -0.02 0.91 16 33 H 0.02 0.93 8.14 -2.39 -0.02 0.91 16 34 H 0.07 3.35 6.07 -2.38 -0.01 3.34 16 35 H 0.03 1.26 6.86 -2.39 -0.02 1.24 16 36 H 0.26 13.41 8.31 -92.70 -0.77 12.64 16 37 H 0.08 0.71 8.11 -2.39 -0.02 0.69 16 38 H 0.10 0.74 8.14 -2.39 -0.02 0.72 16 39 H 0.10 0.73 7.88 -2.39 -0.02 0.71 16 Total: -1.00 -63.20 329.20 3.76 -59.44 By element: Atomic # 1 Polarization: 16.34 SS G_CDS: 0.56 Total: 16.90 kcal Atomic # 6 Polarization: -25.32 SS G_CDS: 4.61 Total: -20.72 kcal Atomic # 7 Polarization: -75.27 SS G_CDS: -2.11 Total: -77.38 kcal Atomic # 8 Polarization: -26.71 SS G_CDS: -0.07 Total: -26.78 kcal Atomic # 14 Polarization: 42.83 SS G_CDS: 2.03 Total: 44.85 kcal Atomic # 16 Polarization: 4.93 SS G_CDS: -1.25 Total: 3.68 kcal Total: -63.20 3.76 -59.44 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000315332566.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 17.087 kcal (2) G-P(sol) polarization free energy of solvation -63.199 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -46.112 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.763 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -59.436 kcal (6) G-S(sol) free energy of system = (1) + (5) -42.350 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.43 seconds