Wall clock time and date at job start Tue Mar 31 2020 05:43:58 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53006 * 1 3 3 C 1.50698 * 109.47184 * 2 1 4 4 C 1.37469 * 123.35568 * 265.02848 * 3 2 1 5 5 C 1.33815 * 115.10225 * 179.97438 * 4 3 2 6 6 S 1.70617 * 110.95549 * 0.02562 * 5 4 3 7 7 C 1.36657 * 123.34721 * 84.73350 * 3 2 1 8 8 C 1.46585 * 125.45578 * 0.03069 * 7 3 2 9 9 O 1.21702 * 120.00314 * 0.02562 * 8 7 3 10 10 N 1.34777 * 119.99673 * 180.02562 * 8 7 3 11 11 C 1.46495 * 120.00150 * 180.02562 * 10 8 7 12 12 C 1.52996 * 109.47186 * 180.02562 * 11 10 8 13 13 C 1.53000 * 109.47259 * 299.99858 * 12 11 10 14 14 C 1.52997 * 109.47377 * 59.99639 * 12 11 10 15 15 C 1.50701 * 109.47036 * 179.97438 * 12 11 10 16 16 H 1.07993 * 120.00411 * 359.97438 * 15 12 11 17 17 C 1.37880 * 119.99907 * 179.97438 * 15 12 11 18 18 N 1.31521 * 120.00234 * 0.02562 * 17 15 12 19 19 Si 1.86798 * 119.99984 * 180.02562 * 17 15 12 20 20 H 1.48503 * 109.47363 * 60.00380 * 19 17 15 21 21 H 1.48506 * 109.47288 * 180.02562 * 19 17 15 22 22 H 1.48502 * 109.47176 * 300.00266 * 19 17 15 23 23 H 1.09001 * 109.47002 * 299.99404 * 1 2 3 24 24 H 1.08993 * 109.46955 * 59.99842 * 1 2 3 25 25 H 1.09000 * 109.47050 * 179.97438 * 1 2 3 26 26 H 1.09001 * 109.46801 * 120.00442 * 2 1 3 27 27 H 1.09001 * 109.46998 * 240.00038 * 2 1 3 28 28 H 1.08003 * 122.44661 * 359.94052 * 4 3 2 29 29 H 1.07997 * 124.52013 * 179.97438 * 5 4 3 30 30 H 0.97001 * 119.99666 * 0.02562 * 10 8 7 31 31 H 1.09004 * 109.46952 * 300.00230 * 11 10 8 32 32 H 1.08998 * 109.47388 * 59.99742 * 11 10 8 33 33 H 1.09003 * 109.47351 * 59.99852 * 13 12 11 34 34 H 1.09003 * 109.47299 * 180.02562 * 13 12 11 35 35 H 1.09004 * 109.47166 * 300.00021 * 13 12 11 36 36 H 1.09003 * 109.46811 * 60.00465 * 14 12 11 37 37 H 1.09003 * 109.47018 * 179.97438 * 14 12 11 38 38 H 1.08994 * 109.47527 * 300.00014 * 14 12 11 39 39 H 0.96992 * 119.99930 * 179.97438 * 18 17 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 6 2.0324 1.4208 0.0000 4 6 2.3782 2.1002 -1.1439 5 6 2.8034 3.3545 -0.9526 6 16 2.7926 3.7562 0.7056 7 6 2.1840 2.1640 1.1368 8 6 1.8897 1.7059 2.4977 9 8 1.4737 0.5773 2.6833 10 7 2.0798 2.5345 3.5435 11 6 1.7862 2.0766 4.9037 12 6 2.0852 3.2018 5.8963 13 6 3.5616 3.5908 5.7967 14 6 1.2147 4.4164 5.5680 15 6 1.7826 2.7310 7.2955 16 1 1.4135 1.7296 7.4603 17 6 1.9770 3.5788 8.3654 18 7 2.4260 4.7985 8.1648 19 14 1.6025 2.9949 10.0998 20 1 2.4473 1.8158 10.4184 21 1 1.8927 4.0871 11.0633 22 1 0.1695 2.6178 10.1966 23 1 -0.3633 0.5137 0.8901 24 1 -0.3633 0.5138 -0.8899 25 1 -0.3633 -1.0277 -0.0005 26 1 1.8933 -0.5139 0.8900 27 1 1.8934 -0.5138 -0.8900 28 1 2.3120 1.6541 -2.1253 29 1 3.1130 4.0230 -1.7423 30 1 2.4110 3.4341 3.3955 31 1 0.7343 1.7999 4.9748 32 1 2.4061 1.2111 5.1375 33 1 3.7802 3.9315 4.7846 34 1 3.7748 4.3922 6.5042 35 1 4.1819 2.7256 6.0307 36 1 0.1628 4.1393 5.6390 37 1 1.4274 5.2178 6.2755 38 1 1.4331 4.7571 4.5560 39 1 2.5624 5.3950 8.9173 RHF calculation, no. of doubly occupied orbitals= 50 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000315415687.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:43:58 Heat of formation + Delta-G solvation = -22.954096 kcal Electronic energy + Delta-G solvation = -20000.841227 eV Core-core repulsion = 17034.524340 eV Total energy + Delta-G solvation = -2966.316886 eV No. of doubly occupied orbitals = 50 Molecular weight (most abundant/longest-lived isotopes) = 281.119 amu Computer time = 0.35 seconds Orbital eigenvalues (eV) -39.64040 -37.96997 -36.24162 -33.36938 -32.65462 -31.02223 -29.26663 -25.99558 -25.73337 -25.32402 -24.37319 -22.36066 -21.11852 -19.10906 -18.42484 -18.03425 -16.07297 -15.75085 -15.27014 -14.90101 -14.80117 -14.36226 -14.02424 -13.73773 -13.21925 -13.09790 -12.92182 -12.60629 -12.34918 -12.18318 -11.88156 -11.45242 -11.39273 -11.20620 -10.97455 -10.84999 -10.72824 -10.66431 -10.39033 -10.20443 -9.64300 -9.57624 -9.28750 -8.86797 -8.80654 -8.48859 -8.43871 -8.30126 -6.02088 -4.12324 0.55979 1.49736 1.89178 2.40291 3.30378 3.34686 3.37936 3.51801 3.69881 4.40315 4.76788 5.03844 5.14018 5.24593 5.24942 5.40407 5.52317 5.69664 5.79169 5.98615 6.07442 6.20851 6.29146 6.31103 6.41495 6.49282 6.54921 6.75893 6.81901 6.92711 6.99220 7.01001 7.34253 7.54856 7.68894 7.99163 8.00063 8.13846 8.37496 8.61810 8.87928 9.53417 10.99369 Molecular weight = 281.12amu Principal moments of inertia in cm(-1) A = 0.029206 B = 0.004220 C = 0.003824 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 958.470019 B = 6634.021965 C = 7320.313350 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.136 4.136 2 C -0.070 4.070 3 C -0.029 4.029 4 C -0.145 4.145 5 C -0.237 4.237 6 S 0.196 5.804 7 C -0.258 4.258 8 C 0.578 3.422 9 O -0.534 6.534 10 N -0.712 5.712 11 C 0.133 3.867 12 C 0.055 3.945 13 C -0.131 4.131 14 C -0.131 4.131 15 C -0.506 4.506 16 H 0.057 0.943 17 C 0.067 3.933 18 N -0.886 5.886 19 Si 0.894 3.106 20 H -0.277 1.277 21 H -0.288 1.288 22 H -0.277 1.277 23 H 0.061 0.939 24 H 0.046 0.954 25 H 0.056 0.944 26 H 0.095 0.905 27 H 0.065 0.935 28 H 0.141 0.859 29 H 0.166 0.834 30 H 0.395 0.605 31 H 0.057 0.943 32 H 0.057 0.943 33 H 0.005 0.995 34 H 0.086 0.914 35 H 0.027 0.973 36 H 0.027 0.973 37 H 0.086 0.914 38 H 0.005 0.995 39 H 0.260 0.740 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.759 -1.416 -17.306 17.381 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.194 4.194 2 C -0.109 4.109 3 C -0.044 4.044 4 C -0.177 4.177 5 C -0.375 4.375 6 S 0.465 5.535 7 C -0.378 4.378 8 C 0.364 3.636 9 O -0.414 6.414 10 N -0.362 5.362 11 C 0.011 3.989 12 C 0.055 3.945 13 C -0.189 4.189 14 C -0.189 4.189 15 C -0.545 4.545 16 H 0.076 0.924 17 C -0.135 4.135 18 N -0.524 5.524 19 Si 0.722 3.278 20 H -0.203 1.203 21 H -0.213 1.213 22 H -0.203 1.203 23 H 0.080 0.920 24 H 0.065 0.935 25 H 0.075 0.925 26 H 0.114 0.886 27 H 0.083 0.917 28 H 0.159 0.841 29 H 0.184 0.816 30 H 0.230 0.770 31 H 0.076 0.924 32 H 0.076 0.924 33 H 0.024 0.976 34 H 0.105 0.895 35 H 0.046 0.954 36 H 0.046 0.954 37 H 0.105 0.895 38 H 0.024 0.976 39 H 0.071 0.929 Dipole moment (debyes) X Y Z Total from point charges 0.915 -0.690 -16.191 16.231 hybrid contribution -0.312 -0.924 -0.153 0.987 sum 0.603 -1.614 -16.344 16.435 Atomic orbital electron populations 1.21601 0.94430 1.01614 1.01753 1.20383 0.96458 0.90655 1.03398 1.19502 0.96945 0.97527 0.90439 1.19885 1.04065 0.94215 0.99533 1.25217 1.08888 1.01418 1.01995 1.83194 1.59831 1.12060 0.98435 1.24687 1.15685 0.99260 0.98191 1.16967 0.78561 0.85383 0.82735 1.90754 1.46635 1.18970 1.85065 1.46241 1.65944 1.16306 1.07723 1.21771 0.99845 0.98915 0.78397 1.18366 0.92878 0.90512 0.92778 1.21839 0.97478 1.01746 0.97839 1.21839 0.98119 1.01434 0.97515 1.20928 1.44153 0.99349 0.90047 0.92447 1.24876 0.94783 0.94841 0.98954 1.69792 1.45589 1.06155 1.30894 0.86626 0.78885 0.78262 0.84031 1.20277 1.21333 1.20281 0.92004 0.93467 0.92492 0.88631 0.91653 0.84114 0.81641 0.76972 0.92431 0.92429 0.97606 0.89491 0.95358 0.95355 0.89493 0.97606 0.92937 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.68 9.77 37.16 0.36 -1.32 16 2 C -0.07 -0.89 5.50 -27.88 -0.15 -1.05 16 3 C -0.03 -0.39 5.16 -105.47 -0.54 -0.94 16 4 C -0.15 -1.59 9.96 -41.41 -0.41 -2.00 16 5 C -0.24 -2.41 10.92 29.18 0.32 -2.09 16 6 S 0.20 2.36 22.16 -107.50 -2.38 -0.02 16 7 C -0.26 -3.90 6.45 -36.79 -0.24 -4.14 16 8 C 0.58 10.57 7.78 -12.89 -0.10 10.47 16 9 O -0.53 -10.95 13.69 5.19 0.07 -10.88 16 10 N -0.71 -13.27 4.95 -61.65 -0.31 -13.58 16 11 C 0.13 2.85 4.50 -4.05 -0.02 2.83 16 12 C 0.06 1.29 0.50 -155.66 -0.08 1.21 16 13 C -0.13 -2.98 8.08 37.16 0.30 -2.68 16 14 C -0.13 -2.98 8.08 37.16 0.30 -2.68 16 15 C -0.51 -13.22 8.01 -34.44 -0.28 -13.49 16 16 H 0.06 1.51 7.74 -52.49 -0.41 1.10 16 17 C 0.07 1.75 5.15 -17.82 -0.09 1.66 16 18 N -0.89 -23.51 9.35 55.43 0.52 -22.99 16 19 Si 0.89 20.66 29.54 -169.99 -5.02 15.64 16 20 H -0.28 -6.41 7.11 56.52 0.40 -6.01 16 21 H -0.29 -6.61 7.11 56.52 0.40 -6.21 16 22 H -0.28 -6.41 7.11 56.52 0.40 -6.01 16 23 H 0.06 0.91 7.57 -51.93 -0.39 0.52 16 24 H 0.05 0.51 8.14 -51.93 -0.42 0.09 16 25 H 0.06 0.63 8.14 -51.93 -0.42 0.20 16 26 H 0.10 1.45 6.34 -51.93 -0.33 1.12 16 27 H 0.06 0.67 8.12 -51.93 -0.42 0.25 16 28 H 0.14 1.19 8.06 -52.48 -0.42 0.77 16 29 H 0.17 1.20 8.06 -52.49 -0.42 0.78 16 30 H 0.39 6.85 5.28 -40.82 -0.22 6.63 16 31 H 0.06 1.28 8.14 -51.93 -0.42 0.86 16 32 H 0.06 1.28 8.14 -51.93 -0.42 0.86 16 33 H 0.00 0.10 6.86 -51.93 -0.36 -0.26 16 34 H 0.09 2.17 6.07 -51.93 -0.32 1.85 16 35 H 0.03 0.63 8.14 -51.93 -0.42 0.21 16 36 H 0.03 0.63 8.14 -51.93 -0.42 0.21 16 37 H 0.09 2.17 6.07 -51.93 -0.32 1.85 16 38 H 0.00 0.10 6.86 -51.93 -0.36 -0.26 16 39 H 0.26 6.70 8.31 -40.82 -0.34 6.36 16 LS Contribution 325.08 15.07 4.90 4.90 Total: -1.00 -27.74 325.08 -8.48 -36.22 By element: Atomic # 1 Polarization: 10.55 SS G_CDS: -5.63 Total: 4.92 kcal Atomic # 6 Polarization: -13.58 SS G_CDS: -0.63 Total: -14.21 kcal Atomic # 7 Polarization: -36.78 SS G_CDS: 0.21 Total: -36.57 kcal Atomic # 8 Polarization: -10.95 SS G_CDS: 0.07 Total: -10.88 kcal Atomic # 14 Polarization: 20.66 SS G_CDS: -5.02 Total: 15.64 kcal Atomic # 16 Polarization: 2.36 SS G_CDS: -2.38 Total: -0.02 kcal Total LS contribution 4.90 Total: 4.90 kcal Total: -27.74 -8.48 -36.22 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000315415687.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 13.265 kcal (2) G-P(sol) polarization free energy of solvation -27.743 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -14.478 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.476 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.219 kcal (6) G-S(sol) free energy of system = (1) + (5) -22.954 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.35 seconds