Wall clock time and date at job start Tue Mar 31 2020 05:43:57 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53006 * 1 3 3 C 1.50698 * 109.47184 * 2 1 4 4 C 1.37469 * 123.35568 * 265.02848 * 3 2 1 5 5 C 1.33815 * 115.10225 * 179.97438 * 4 3 2 6 6 S 1.70617 * 110.95549 * 0.02562 * 5 4 3 7 7 C 1.36657 * 123.34721 * 84.73350 * 3 2 1 8 8 C 1.46585 * 125.45578 * 0.03069 * 7 3 2 9 9 O 1.21702 * 120.00314 * 0.02562 * 8 7 3 10 10 N 1.34777 * 119.99673 * 180.02562 * 8 7 3 11 11 C 1.46495 * 120.00150 * 180.02562 * 10 8 7 12 12 C 1.52996 * 109.47186 * 180.02562 * 11 10 8 13 13 C 1.53000 * 109.47259 * 299.99858 * 12 11 10 14 14 C 1.52997 * 109.47377 * 59.99639 * 12 11 10 15 15 C 1.50701 * 109.47036 * 179.97438 * 12 11 10 16 16 H 1.07993 * 120.00411 * 359.97438 * 15 12 11 17 17 C 1.37880 * 119.99907 * 179.97438 * 15 12 11 18 18 N 1.31521 * 120.00234 * 0.02562 * 17 15 12 19 19 Si 1.86798 * 119.99984 * 180.02562 * 17 15 12 20 20 H 1.48503 * 109.47363 * 60.00380 * 19 17 15 21 21 H 1.48506 * 109.47288 * 180.02562 * 19 17 15 22 22 H 1.48502 * 109.47176 * 300.00266 * 19 17 15 23 23 H 1.09001 * 109.47002 * 299.99404 * 1 2 3 24 24 H 1.08993 * 109.46955 * 59.99842 * 1 2 3 25 25 H 1.09000 * 109.47050 * 179.97438 * 1 2 3 26 26 H 1.09001 * 109.46801 * 120.00442 * 2 1 3 27 27 H 1.09001 * 109.46998 * 240.00038 * 2 1 3 28 28 H 1.08003 * 122.44661 * 359.94052 * 4 3 2 29 29 H 1.07997 * 124.52013 * 179.97438 * 5 4 3 30 30 H 0.97001 * 119.99666 * 0.02562 * 10 8 7 31 31 H 1.09004 * 109.46952 * 300.00230 * 11 10 8 32 32 H 1.08998 * 109.47388 * 59.99742 * 11 10 8 33 33 H 1.09003 * 109.47351 * 59.99852 * 13 12 11 34 34 H 1.09003 * 109.47299 * 180.02562 * 13 12 11 35 35 H 1.09004 * 109.47166 * 300.00021 * 13 12 11 36 36 H 1.09003 * 109.46811 * 60.00465 * 14 12 11 37 37 H 1.09003 * 109.47018 * 179.97438 * 14 12 11 38 38 H 1.08994 * 109.47527 * 300.00014 * 14 12 11 39 39 H 0.96992 * 119.99930 * 179.97438 * 18 17 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 6 2.0324 1.4208 0.0000 4 6 2.3782 2.1002 -1.1439 5 6 2.8034 3.3545 -0.9526 6 16 2.7926 3.7562 0.7056 7 6 2.1840 2.1640 1.1368 8 6 1.8897 1.7059 2.4977 9 8 1.4737 0.5773 2.6833 10 7 2.0798 2.5345 3.5435 11 6 1.7862 2.0766 4.9037 12 6 2.0852 3.2018 5.8963 13 6 3.5616 3.5908 5.7967 14 6 1.2147 4.4164 5.5680 15 6 1.7826 2.7310 7.2955 16 1 1.4135 1.7296 7.4603 17 6 1.9770 3.5788 8.3654 18 7 2.4260 4.7985 8.1648 19 14 1.6025 2.9949 10.0998 20 1 2.4473 1.8158 10.4184 21 1 1.8927 4.0871 11.0633 22 1 0.1695 2.6178 10.1966 23 1 -0.3633 0.5137 0.8901 24 1 -0.3633 0.5138 -0.8899 25 1 -0.3633 -1.0277 -0.0005 26 1 1.8933 -0.5139 0.8900 27 1 1.8934 -0.5138 -0.8900 28 1 2.3120 1.6541 -2.1253 29 1 3.1130 4.0230 -1.7423 30 1 2.4110 3.4341 3.3955 31 1 0.7343 1.7999 4.9748 32 1 2.4061 1.2111 5.1375 33 1 3.7802 3.9315 4.7846 34 1 3.7748 4.3922 6.5042 35 1 4.1819 2.7256 6.0307 36 1 0.1628 4.1393 5.6390 37 1 1.4274 5.2178 6.2755 38 1 1.4331 4.7571 4.5560 39 1 2.5624 5.3950 8.9173 RHF calculation, no. of doubly occupied orbitals= 50 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000315415687.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:43:57 Heat of formation + Delta-G solvation = -37.796032 kcal Electronic energy + Delta-G solvation = -20001.484821 eV Core-core repulsion = 17034.524340 eV Total energy + Delta-G solvation = -2966.960481 eV No. of doubly occupied orbitals = 50 Molecular weight (most abundant/longest-lived isotopes) = 281.119 amu Computer time = 0.43 seconds Orbital eigenvalues (eV) -40.98096 -39.15274 -37.92479 -35.05928 -33.63969 -32.84794 -30.41635 -27.59867 -27.55820 -27.05363 -25.73401 -23.30278 -22.45304 -20.73828 -19.90104 -19.06689 -17.85197 -17.08180 -16.66710 -16.49498 -16.34294 -15.70206 -15.05621 -14.92833 -14.78292 -14.56326 -14.36663 -14.03475 -13.83631 -13.26267 -13.20555 -13.10707 -12.82706 -12.68939 -12.62852 -12.38306 -12.27721 -12.14014 -11.97510 -11.63459 -11.51093 -11.27328 -10.89064 -10.71764 -10.40505 -10.11335 -9.68182 -9.40320 -8.02312 -6.18337 -0.44061 0.53712 0.98934 1.44870 1.45152 1.45809 1.52537 2.20178 2.24984 2.49122 3.21266 3.85183 3.91834 4.17812 4.33131 4.42016 4.47864 4.49591 4.54989 4.67727 4.78625 4.89312 4.95885 5.01710 5.07241 5.09245 5.13234 5.15926 5.28619 5.35332 5.44370 5.53493 5.57648 5.64031 5.66430 6.11413 6.18435 6.41594 6.56077 6.84829 7.19341 7.49240 8.96779 Molecular weight = 281.12amu Principal moments of inertia in cm(-1) A = 0.029206 B = 0.004220 C = 0.003824 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 958.470019 B = 6634.021965 C = 7320.313350 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.131 4.131 2 C -0.072 4.072 3 C -0.022 4.022 4 C -0.155 4.155 5 C -0.211 4.211 6 S 0.206 5.794 7 C -0.306 4.306 8 C 0.576 3.424 9 O -0.567 6.567 10 N -0.711 5.711 11 C 0.150 3.850 12 C 0.050 3.950 13 C -0.121 4.121 14 C -0.121 4.121 15 C -0.529 4.529 16 H 0.046 0.954 17 C 0.029 3.971 18 N -0.899 5.899 19 Si 0.946 3.054 20 H -0.277 1.277 21 H -0.282 1.282 22 H -0.277 1.277 23 H 0.028 0.972 24 H 0.067 0.933 25 H 0.066 0.934 26 H 0.065 0.935 27 H 0.096 0.904 28 H 0.173 0.827 29 H 0.204 0.796 30 H 0.402 0.598 31 H 0.042 0.958 32 H 0.042 0.958 33 H 0.031 0.969 34 H 0.065 0.935 35 H 0.019 0.981 36 H 0.019 0.981 37 H 0.065 0.935 38 H 0.031 0.969 39 H 0.261 0.739 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.210 -0.765 -19.915 19.966 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.189 4.189 2 C -0.111 4.111 3 C -0.038 4.038 4 C -0.185 4.185 5 C -0.348 4.348 6 S 0.475 5.525 7 C -0.426 4.426 8 C 0.364 3.636 9 O -0.449 6.449 10 N -0.362 5.362 11 C 0.026 3.974 12 C 0.050 3.950 13 C -0.178 4.178 14 C -0.179 4.179 15 C -0.568 4.568 16 H 0.064 0.936 17 C -0.171 4.171 18 N -0.537 5.537 19 Si 0.773 3.227 20 H -0.202 1.202 21 H -0.208 1.208 22 H -0.203 1.203 23 H 0.047 0.953 24 H 0.086 0.914 25 H 0.085 0.915 26 H 0.083 0.917 27 H 0.114 0.886 28 H 0.191 0.809 29 H 0.221 0.779 30 H 0.238 0.762 31 H 0.060 0.940 32 H 0.060 0.940 33 H 0.050 0.950 34 H 0.084 0.916 35 H 0.038 0.962 36 H 0.038 0.962 37 H 0.084 0.916 38 H 0.050 0.950 39 H 0.070 0.930 Dipole moment (debyes) X Y Z Total from point charges 1.374 -0.021 -18.812 18.862 hybrid contribution -0.439 -1.124 0.539 1.322 sum 0.935 -1.145 -18.272 18.332 Atomic orbital electron populations 1.21551 0.94203 1.02117 1.01025 1.20407 0.96642 0.90732 1.03362 1.19830 0.95451 0.97579 0.90944 1.20118 1.04128 0.94397 0.99854 1.25704 1.06115 1.01475 1.01530 1.83135 1.59356 1.09954 1.00100 1.24417 1.19590 1.01866 0.96694 1.17425 0.77471 0.84771 0.83885 1.90729 1.47977 1.20302 1.85882 1.46058 1.66567 1.16796 1.06766 1.21326 0.98497 0.97756 0.79803 1.18370 0.93393 0.91173 0.92087 1.21677 0.96817 1.00567 0.98782 1.21677 0.97421 1.00329 0.98427 1.21207 1.44591 0.99082 0.91897 0.93605 1.25455 0.94757 0.95041 1.01808 1.69897 1.45718 1.06582 1.31543 0.85800 0.78504 0.77847 0.80544 1.20245 1.20765 1.20261 0.95283 0.91449 0.91472 0.91680 0.88583 0.80947 0.77917 0.76152 0.93990 0.93961 0.94963 0.91593 0.96163 0.96169 0.91590 0.94971 0.92962 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -3.13 9.77 71.98 0.70 -2.42 16 2 C -0.07 -1.77 5.50 29.85 0.16 -1.60 16 3 C -0.02 -0.55 5.16 -20.42 -0.11 -0.65 16 4 C -0.15 -2.75 9.96 21.08 0.21 -2.54 16 5 C -0.21 -3.35 10.92 66.81 0.73 -2.62 16 6 S 0.21 4.46 22.16 -56.49 -1.25 3.20 16 7 C -0.31 -9.00 6.45 24.08 0.16 -8.84 16 8 C 0.58 21.51 7.78 86.42 0.67 22.19 16 9 O -0.57 -24.26 13.69 -4.35 -0.06 -24.32 16 10 N -0.71 -26.83 4.95 -467.18 -2.31 -29.15 16 11 C 0.15 6.61 4.50 86.38 0.39 7.00 16 12 C 0.05 2.39 0.50 -52.93 -0.03 2.36 16 13 C -0.12 -5.50 8.08 71.98 0.58 -4.91 16 14 C -0.12 -5.50 8.08 71.98 0.58 -4.92 16 15 C -0.53 -28.26 8.01 25.60 0.21 -28.05 16 16 H 0.05 2.49 7.74 -2.91 -0.02 2.46 16 17 C 0.03 1.55 5.15 84.65 0.44 1.99 16 18 N -0.90 -48.07 9.35 21.45 0.20 -47.87 16 19 Si 0.95 42.73 29.54 68.60 2.03 44.76 16 20 H -0.28 -12.41 7.11 99.48 0.71 -11.71 16 21 H -0.28 -12.42 7.11 99.48 0.71 -11.72 16 22 H -0.28 -12.42 7.11 99.48 0.71 -11.72 16 23 H 0.03 0.86 7.57 -2.39 -0.02 0.85 16 24 H 0.07 1.31 8.14 -2.39 -0.02 1.29 16 25 H 0.07 1.42 8.14 -2.39 -0.02 1.40 16 26 H 0.06 2.01 6.34 -2.39 -0.02 2.00 16 27 H 0.10 1.72 8.12 -2.39 -0.02 1.70 16 28 H 0.17 1.98 8.06 -2.91 -0.02 1.96 16 29 H 0.20 1.71 8.06 -2.91 -0.02 1.69 16 30 H 0.40 13.74 5.28 -92.71 -0.49 13.25 16 31 H 0.04 1.96 8.14 -2.38 -0.02 1.94 16 32 H 0.04 1.97 8.14 -2.39 -0.02 1.95 16 33 H 0.03 1.25 6.86 -2.39 -0.02 1.23 16 34 H 0.07 3.30 6.07 -2.39 -0.01 3.29 16 35 H 0.02 0.90 8.14 -2.38 -0.02 0.88 16 36 H 0.02 0.90 8.14 -2.39 -0.02 0.88 16 37 H 0.07 3.30 6.07 -2.39 -0.01 3.29 16 38 H 0.03 1.25 6.86 -2.39 -0.02 1.23 16 39 H 0.26 13.45 8.31 -92.71 -0.77 12.68 16 Total: -1.00 -61.45 325.08 3.86 -57.59 By element: Atomic # 1 Polarization: 18.26 SS G_CDS: 0.56 Total: 18.82 kcal Atomic # 6 Polarization: -27.73 SS G_CDS: 4.70 Total: -23.04 kcal Atomic # 7 Polarization: -74.90 SS G_CDS: -2.11 Total: -77.02 kcal Atomic # 8 Polarization: -24.26 SS G_CDS: -0.06 Total: -24.32 kcal Atomic # 14 Polarization: 42.73 SS G_CDS: 2.03 Total: 44.76 kcal Atomic # 16 Polarization: 4.46 SS G_CDS: -1.25 Total: 3.20 kcal Total: -61.45 3.86 -57.59 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000315415687.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 19.793 kcal (2) G-P(sol) polarization free energy of solvation -61.446 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -41.654 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.858 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -57.589 kcal (6) G-S(sol) free energy of system = (1) + (5) -37.796 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.43 seconds