Wall clock time and date at job start Tue Mar 31 2020 05:41:15 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 C 1.50698 * 109.47020 * 2 1 4 4 C 1.33811 * 124.52665 * 90.00334 * 3 2 1 5 5 C 1.37475 * 115.10378 * 180.02562 * 4 3 2 6 6 C 1.36654 * 113.29595 * 359.97438 * 5 4 3 7 7 C 1.46576 * 125.45688 * 179.97438 * 6 5 4 8 8 O 1.21704 * 120.00049 * 359.97438 * 7 6 5 9 9 N 1.34777 * 119.99910 * 180.02562 * 7 6 5 10 10 C 1.46506 * 119.99873 * 180.02562 * 9 7 6 11 11 C 1.53002 * 109.47035 * 179.97438 * 10 9 7 12 12 C 1.53000 * 109.46911 * 300.00027 * 11 10 9 13 13 C 1.53001 * 109.46963 * 59.99511 * 11 10 9 14 14 C 1.50696 * 109.47300 * 179.97438 * 11 10 9 15 15 H 1.07999 * 119.99822 * 359.97438 * 14 11 10 16 16 C 1.37876 * 120.00339 * 179.97438 * 14 11 10 17 17 N 1.31514 * 119.99769 * 0.02562 * 16 14 11 18 18 Si 1.86800 * 120.00300 * 180.02562 * 16 14 11 19 19 H 1.48498 * 109.46691 * 359.97438 * 18 16 14 20 20 H 1.48497 * 109.47025 * 120.00050 * 18 16 14 21 21 H 1.48500 * 109.46740 * 240.00408 * 18 16 14 22 22 S 1.70622 * 124.52031 * 270.26803 * 3 2 1 23 23 H 1.08998 * 109.46740 * 180.02562 * 1 2 3 24 24 H 1.09007 * 109.47109 * 299.99997 * 1 2 3 25 25 H 1.08996 * 109.47283 * 60.00256 * 1 2 3 26 26 H 1.08998 * 109.47339 * 239.99920 * 2 1 3 27 27 H 1.08996 * 109.47283 * 119.99744 * 2 1 3 28 28 H 1.07999 * 122.45075 * 359.97167 * 4 3 2 29 29 H 1.07997 * 123.35109 * 180.02562 * 5 4 3 30 30 H 0.96999 * 120.00047 * 359.97438 * 9 7 6 31 31 H 1.09004 * 109.47073 * 299.99562 * 10 9 7 32 32 H 1.09000 * 109.47212 * 59.99645 * 10 9 7 33 33 H 1.09002 * 109.47398 * 60.00028 * 12 11 10 34 34 H 1.09001 * 109.47194 * 180.02562 * 12 11 10 35 35 H 1.09000 * 109.46968 * 300.00009 * 12 11 10 36 36 H 1.09004 * 109.47086 * 60.00354 * 13 11 10 37 37 H 1.09001 * 109.46652 * 180.02562 * 13 11 10 38 38 H 1.08992 * 109.47514 * 300.00067 * 13 11 10 39 39 H 0.97000 * 120.00540 * 179.97438 * 17 16 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0323 1.4208 0.0000 4 6 2.2851 2.1358 1.1024 5 6 2.7366 3.4147 0.8773 6 6 2.8459 3.7236 -0.4493 7 6 3.2992 5.0090 -0.9885 8 8 3.6156 5.9085 -0.2323 9 7 3.3646 5.1951 -2.3218 10 6 3.8182 6.4797 -2.8607 11 6 3.7997 6.4264 -4.3897 12 6 4.7315 5.3131 -4.8725 13 6 2.3755 6.1447 -4.8729 14 6 4.2656 7.7479 -4.9441 15 1 4.5465 8.5461 -4.2730 16 6 4.3334 7.9380 -6.3080 17 7 3.9910 6.9661 -7.1252 18 14 4.9118 9.5759 -6.9952 19 1 5.2351 10.4960 -5.8754 20 1 6.1230 9.3635 -7.8276 21 1 3.8361 10.1704 -7.8288 22 16 2.3484 2.3346 -1.4058 23 1 -0.3633 -1.0277 0.0005 24 1 -0.3634 0.5139 0.8900 25 1 -0.3633 0.5138 -0.8900 26 1 1.8933 -0.5138 -0.8899 27 1 1.8933 -0.5138 0.8900 28 1 2.1440 1.7377 2.0964 29 1 2.9815 4.1060 1.6701 30 1 3.1120 4.4782 -2.9245 31 1 3.1545 7.2729 -2.5164 32 1 4.8329 6.6800 -2.5167 33 1 4.3940 4.3573 -4.4715 34 1 4.7187 5.2754 -5.9618 35 1 5.7461 5.5137 -4.5282 36 1 1.7116 6.9379 -4.5290 37 1 2.3625 6.1063 -5.9622 38 1 2.0381 5.1891 -4.4720 39 1 4.0383 7.0999 -8.0847 RHF calculation, no. of doubly occupied orbitals= 50 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000315508078.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:41:15 Heat of formation + Delta-G solvation = -26.017174 kcal Electronic energy + Delta-G solvation = -19542.427022 eV Core-core repulsion = 16575.977310 eV Total energy + Delta-G solvation = -2966.449712 eV No. of doubly occupied orbitals = 50 Molecular weight (most abundant/longest-lived isotopes) = 281.119 amu Computer time = 0.36 seconds Orbital eigenvalues (eV) -39.41642 -37.96046 -36.31373 -33.89279 -33.31262 -30.96002 -28.89898 -26.05572 -25.73766 -25.33416 -24.35911 -22.50054 -21.19677 -19.31859 -18.61614 -17.85421 -16.19522 -15.88598 -15.30819 -14.88448 -14.81510 -14.56774 -14.28585 -13.91002 -13.34819 -12.97718 -12.93705 -12.78124 -12.41000 -12.19565 -12.00984 -11.74065 -11.39574 -11.35927 -11.21435 -10.88723 -10.87102 -10.66593 -10.40276 -10.21445 -9.73412 -9.65110 -9.31688 -8.79508 -8.77102 -8.63321 -8.45057 -8.31600 -6.02764 -4.12826 0.52870 1.43427 1.86650 2.40653 3.27213 3.35769 3.40279 3.52222 3.67598 4.40052 4.45071 4.75123 4.97569 5.12980 5.16904 5.24132 5.34003 5.45760 5.54030 5.66762 5.88591 5.94413 6.09072 6.24861 6.30536 6.33227 6.49414 6.74094 6.81381 6.91790 6.97115 7.00553 7.33694 7.54474 7.68753 7.97041 7.99622 8.13253 8.36932 8.59149 8.87937 9.53080 10.98785 Molecular weight = 281.12amu Principal moments of inertia in cm(-1) A = 0.033699 B = 0.003713 C = 0.003458 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 830.693632 B = 7539.797953 C = 8095.340971 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.149 4.149 2 C -0.054 4.054 3 C -0.201 4.201 4 C -0.152 4.152 5 C -0.062 4.062 6 C -0.255 4.255 7 C 0.578 3.422 8 O -0.541 6.541 9 N -0.711 5.711 10 C 0.131 3.869 11 C 0.055 3.945 12 C -0.131 4.131 13 C -0.131 4.131 14 C -0.505 4.505 15 H 0.059 0.941 16 C 0.066 3.934 17 N -0.885 5.885 18 Si 0.894 3.106 19 H -0.273 1.273 20 H -0.284 1.284 21 H -0.284 1.284 22 S 0.203 5.797 23 H 0.061 0.939 24 H 0.059 0.941 25 H 0.058 0.942 26 H 0.075 0.925 27 H 0.082 0.918 28 H 0.141 0.859 29 H 0.151 0.849 30 H 0.395 0.605 31 H 0.058 0.942 32 H 0.058 0.942 33 H 0.005 0.995 34 H 0.087 0.913 35 H 0.027 0.973 36 H 0.028 0.972 37 H 0.087 0.913 38 H 0.005 0.995 39 H 0.259 0.741 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.651 -14.560 11.220 19.231 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.207 4.207 2 C -0.093 4.093 3 C -0.321 4.321 4 C -0.183 4.183 5 C -0.095 4.095 6 C -0.376 4.376 7 C 0.363 3.637 8 O -0.421 6.421 9 N -0.361 5.361 10 C 0.009 3.991 11 C 0.054 3.946 12 C -0.189 4.189 13 C -0.189 4.189 14 C -0.544 4.544 15 H 0.077 0.923 16 C -0.135 4.135 17 N -0.524 5.524 18 Si 0.722 3.278 19 H -0.197 1.197 20 H -0.211 1.211 21 H -0.211 1.211 22 S 0.471 5.529 23 H 0.080 0.920 24 H 0.078 0.922 25 H 0.077 0.923 26 H 0.094 0.906 27 H 0.100 0.900 28 H 0.158 0.842 29 H 0.169 0.831 30 H 0.231 0.769 31 H 0.076 0.924 32 H 0.076 0.924 33 H 0.024 0.976 34 H 0.105 0.895 35 H 0.047 0.953 36 H 0.047 0.953 37 H 0.105 0.895 38 H 0.024 0.976 39 H 0.070 0.930 Dipole moment (debyes) X Y Z Total from point charges -5.533 -14.207 9.954 18.209 hybrid contribution 0.296 0.785 0.916 1.242 sum -5.237 -13.423 10.870 18.049 Atomic orbital electron populations 1.21808 0.94146 1.02046 1.02689 1.20127 0.96311 0.89498 1.03397 1.24248 1.07779 1.02061 0.98018 1.19910 1.04877 0.94160 0.99371 1.20715 0.97370 0.96200 0.95248 1.24825 1.15128 0.99618 0.97999 1.17016 0.78343 0.85397 0.82958 1.90792 1.50265 1.42790 1.58269 1.46237 1.66296 1.18156 1.05396 1.21800 0.98470 0.82031 0.96756 1.18378 0.93288 0.95881 0.87028 1.21840 0.97849 0.94753 1.04474 1.21840 0.96769 0.95836 1.04469 1.21014 1.44189 0.97572 0.91624 0.92306 1.24881 0.95005 0.96684 0.96949 1.69811 1.48239 1.31443 1.02918 0.86505 0.78325 0.83975 0.79023 1.19746 1.21057 1.21061 1.83149 1.59663 1.02670 1.07449 0.91969 0.92223 0.92259 0.90627 0.89964 0.84156 0.83117 0.76910 0.92369 0.92374 0.97599 0.89462 0.95334 0.95328 0.89470 0.97609 0.93045 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.03 9.89 37.16 0.37 -0.67 16 2 C -0.05 -0.41 6.36 -27.88 -0.18 -0.59 16 3 C -0.20 -2.10 5.53 -35.86 -0.20 -2.30 16 4 C -0.15 -1.65 9.99 -41.41 -0.41 -2.06 16 5 C -0.06 -0.83 10.01 -40.43 -0.40 -1.24 16 6 C -0.26 -3.89 6.45 -36.79 -0.24 -4.13 16 7 C 0.58 10.92 7.78 -12.90 -0.10 10.82 16 8 O -0.54 -11.90 16.84 5.19 0.09 -11.81 16 9 N -0.71 -13.48 4.95 -61.64 -0.31 -13.79 16 10 C 0.13 2.86 4.50 -4.04 -0.02 2.84 16 11 C 0.05 1.29 0.50 -155.66 -0.08 1.21 16 12 C -0.13 -2.99 8.08 37.16 0.30 -2.69 16 13 C -0.13 -2.99 8.08 37.16 0.30 -2.69 16 14 C -0.51 -13.28 8.01 -34.44 -0.28 -13.55 16 15 H 0.06 1.56 7.74 -52.49 -0.41 1.15 16 16 C 0.07 1.74 5.15 -17.82 -0.09 1.64 16 17 N -0.89 -23.54 9.35 55.43 0.52 -23.02 16 18 Si 0.89 20.72 29.54 -169.99 -5.02 15.70 16 19 H -0.27 -6.33 7.11 56.52 0.40 -5.93 16 20 H -0.28 -6.59 7.11 56.52 0.40 -6.19 16 21 H -0.28 -6.59 7.11 56.52 0.40 -6.19 16 22 S 0.20 2.47 22.10 -107.50 -2.38 0.09 16 23 H 0.06 0.34 8.14 -51.93 -0.42 -0.08 16 24 H 0.06 0.42 8.14 -51.93 -0.42 0.00 16 25 H 0.06 0.45 8.14 -51.93 -0.42 0.03 16 26 H 0.08 0.53 8.14 -51.93 -0.42 0.11 16 27 H 0.08 0.52 8.14 -51.93 -0.42 0.10 16 28 H 0.14 1.17 8.06 -52.49 -0.42 0.75 16 29 H 0.15 1.94 8.06 -52.49 -0.42 1.52 16 30 H 0.40 6.91 5.28 -40.82 -0.22 6.69 16 31 H 0.06 1.32 8.14 -51.93 -0.42 0.89 16 32 H 0.06 1.31 8.14 -51.93 -0.42 0.89 16 33 H 0.01 0.10 6.86 -51.93 -0.36 -0.25 16 34 H 0.09 2.18 6.07 -51.93 -0.32 1.86 16 35 H 0.03 0.64 8.14 -51.93 -0.42 0.22 16 36 H 0.03 0.64 8.14 -51.93 -0.42 0.22 16 37 H 0.09 2.18 6.07 -51.93 -0.32 1.86 16 38 H 0.00 0.10 6.86 -51.93 -0.36 -0.26 16 39 H 0.26 6.64 8.31 -40.82 -0.34 6.30 16 LS Contribution 331.05 15.07 4.99 4.99 Total: -1.00 -28.67 331.05 -8.89 -37.56 By element: Atomic # 1 Polarization: 9.44 SS G_CDS: -5.75 Total: 3.69 kcal Atomic # 6 Polarization: -12.38 SS G_CDS: -1.03 Total: -13.41 kcal Atomic # 7 Polarization: -37.02 SS G_CDS: 0.21 Total: -36.81 kcal Atomic # 8 Polarization: -11.90 SS G_CDS: 0.09 Total: -11.81 kcal Atomic # 14 Polarization: 20.72 SS G_CDS: -5.02 Total: 15.70 kcal Atomic # 16 Polarization: 2.47 SS G_CDS: -2.38 Total: 0.09 kcal Total LS contribution 4.99 Total: 4.99 kcal Total: -28.67 -8.89 -37.56 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000315508078.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 11.540 kcal (2) G-P(sol) polarization free energy of solvation -28.670 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -17.130 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.887 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.557 kcal (6) G-S(sol) free energy of system = (1) + (5) -26.017 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.36 seconds