Wall clock time and date at job start Tue Mar 31 2020 05:41:15 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 C 1.50698 * 109.47020 * 2 1 4 4 C 1.33811 * 124.52665 * 90.00334 * 3 2 1 5 5 C 1.37475 * 115.10378 * 180.02562 * 4 3 2 6 6 C 1.36654 * 113.29595 * 359.97438 * 5 4 3 7 7 C 1.46576 * 125.45688 * 179.97438 * 6 5 4 8 8 O 1.21704 * 120.00049 * 359.97438 * 7 6 5 9 9 N 1.34777 * 119.99910 * 180.02562 * 7 6 5 10 10 C 1.46506 * 119.99873 * 180.02562 * 9 7 6 11 11 C 1.53002 * 109.47035 * 179.97438 * 10 9 7 12 12 C 1.53000 * 109.46911 * 300.00027 * 11 10 9 13 13 C 1.53001 * 109.46963 * 59.99511 * 11 10 9 14 14 C 1.50696 * 109.47300 * 179.97438 * 11 10 9 15 15 H 1.07999 * 119.99822 * 359.97438 * 14 11 10 16 16 C 1.37876 * 120.00339 * 179.97438 * 14 11 10 17 17 N 1.31514 * 119.99769 * 0.02562 * 16 14 11 18 18 Si 1.86800 * 120.00300 * 180.02562 * 16 14 11 19 19 H 1.48498 * 109.46691 * 359.97438 * 18 16 14 20 20 H 1.48497 * 109.47025 * 120.00050 * 18 16 14 21 21 H 1.48500 * 109.46740 * 240.00408 * 18 16 14 22 22 S 1.70622 * 124.52031 * 270.26803 * 3 2 1 23 23 H 1.08998 * 109.46740 * 180.02562 * 1 2 3 24 24 H 1.09007 * 109.47109 * 299.99997 * 1 2 3 25 25 H 1.08996 * 109.47283 * 60.00256 * 1 2 3 26 26 H 1.08998 * 109.47339 * 239.99920 * 2 1 3 27 27 H 1.08996 * 109.47283 * 119.99744 * 2 1 3 28 28 H 1.07999 * 122.45075 * 359.97167 * 4 3 2 29 29 H 1.07997 * 123.35109 * 180.02562 * 5 4 3 30 30 H 0.96999 * 120.00047 * 359.97438 * 9 7 6 31 31 H 1.09004 * 109.47073 * 299.99562 * 10 9 7 32 32 H 1.09000 * 109.47212 * 59.99645 * 10 9 7 33 33 H 1.09002 * 109.47398 * 60.00028 * 12 11 10 34 34 H 1.09001 * 109.47194 * 180.02562 * 12 11 10 35 35 H 1.09000 * 109.46968 * 300.00009 * 12 11 10 36 36 H 1.09004 * 109.47086 * 60.00354 * 13 11 10 37 37 H 1.09001 * 109.46652 * 180.02562 * 13 11 10 38 38 H 1.08992 * 109.47514 * 300.00067 * 13 11 10 39 39 H 0.97000 * 120.00540 * 179.97438 * 17 16 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0323 1.4208 0.0000 4 6 2.2851 2.1358 1.1024 5 6 2.7366 3.4147 0.8773 6 6 2.8459 3.7236 -0.4493 7 6 3.2992 5.0090 -0.9885 8 8 3.6156 5.9085 -0.2323 9 7 3.3646 5.1951 -2.3218 10 6 3.8182 6.4797 -2.8607 11 6 3.7997 6.4264 -4.3897 12 6 4.7315 5.3131 -4.8725 13 6 2.3755 6.1447 -4.8729 14 6 4.2656 7.7479 -4.9441 15 1 4.5465 8.5461 -4.2730 16 6 4.3334 7.9380 -6.3080 17 7 3.9910 6.9661 -7.1252 18 14 4.9118 9.5759 -6.9952 19 1 5.2351 10.4960 -5.8754 20 1 6.1230 9.3635 -7.8276 21 1 3.8361 10.1704 -7.8288 22 16 2.3484 2.3346 -1.4058 23 1 -0.3633 -1.0277 0.0005 24 1 -0.3634 0.5139 0.8900 25 1 -0.3633 0.5138 -0.8900 26 1 1.8933 -0.5138 -0.8899 27 1 1.8933 -0.5138 0.8900 28 1 2.1440 1.7377 2.0964 29 1 2.9815 4.1060 1.6701 30 1 3.1120 4.4782 -2.9245 31 1 3.1545 7.2729 -2.5164 32 1 4.8329 6.6800 -2.5167 33 1 4.3940 4.3573 -4.4715 34 1 4.7187 5.2754 -5.9618 35 1 5.7461 5.5137 -4.5282 36 1 1.7116 6.9379 -4.5290 37 1 2.3625 6.1063 -5.9622 38 1 2.0381 5.1891 -4.4720 39 1 4.0383 7.0999 -8.0847 RHF calculation, no. of doubly occupied orbitals= 50 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000315508078.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:41:15 Heat of formation + Delta-G solvation = -41.424130 kcal Electronic energy + Delta-G solvation = -19543.095117 eV Core-core repulsion = 16575.977310 eV Total energy + Delta-G solvation = -2967.117807 eV No. of doubly occupied orbitals = 50 Molecular weight (most abundant/longest-lived isotopes) = 281.119 amu Computer time = 0.44 seconds Orbital eigenvalues (eV) -40.88498 -39.01191 -38.04380 -35.08687 -34.63411 -32.81579 -29.94022 -27.60442 -27.57195 -27.07163 -25.63846 -23.24527 -22.53409 -20.81291 -20.18486 -19.01795 -17.82239 -17.25917 -16.72965 -16.53387 -16.40996 -15.75751 -15.12231 -14.99208 -14.81106 -14.65517 -14.29623 -14.06304 -13.77859 -13.28467 -13.24207 -13.13666 -12.83677 -12.69929 -12.58467 -12.40032 -12.28697 -12.14855 -12.05230 -11.66496 -11.52681 -11.37286 -11.09904 -10.72706 -10.42263 -10.14986 -9.63254 -9.54745 -8.03381 -6.19345 -0.50768 0.45071 0.91601 1.39781 1.41663 1.45671 1.55270 2.17002 2.19252 2.47925 3.20277 3.71424 3.83617 4.16480 4.34080 4.38534 4.42962 4.45774 4.50225 4.66248 4.82028 4.92552 4.93736 5.00886 5.04473 5.07847 5.15024 5.17028 5.22245 5.27258 5.37176 5.44804 5.49324 5.63448 5.66180 6.10737 6.17410 6.40681 6.49249 6.84058 7.11036 7.48438 8.96105 Molecular weight = 281.12amu Principal moments of inertia in cm(-1) A = 0.033699 B = 0.003713 C = 0.003458 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 830.693632 B = 7539.797953 C = 8095.340971 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.149 4.149 2 C -0.056 4.056 3 C -0.179 4.179 4 C -0.159 4.159 5 C -0.051 4.051 6 C -0.302 4.302 7 C 0.578 3.422 8 O -0.583 6.583 9 N -0.707 5.707 10 C 0.146 3.854 11 C 0.051 3.949 12 C -0.121 4.121 13 C -0.121 4.121 14 C -0.529 4.529 15 H 0.046 0.954 16 C 0.029 3.971 17 N -0.899 5.899 18 Si 0.947 3.053 19 H -0.276 1.276 20 H -0.281 1.281 21 H -0.281 1.281 22 S 0.216 5.784 23 H 0.080 0.920 24 H 0.058 0.942 25 H 0.049 0.951 26 H 0.085 0.915 27 H 0.104 0.896 28 H 0.171 0.829 29 H 0.149 0.851 30 H 0.404 0.596 31 H 0.043 0.957 32 H 0.043 0.957 33 H 0.032 0.968 34 H 0.066 0.934 35 H 0.020 0.980 36 H 0.020 0.980 37 H 0.066 0.934 38 H 0.032 0.968 39 H 0.261 0.739 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -6.427 -16.889 11.983 21.682 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.207 4.207 2 C -0.095 4.095 3 C -0.300 4.300 4 C -0.189 4.189 5 C -0.085 4.085 6 C -0.422 4.422 7 C 0.366 3.634 8 O -0.466 6.466 9 N -0.358 5.358 10 C 0.023 3.977 11 C 0.050 3.950 12 C -0.179 4.179 13 C -0.179 4.179 14 C -0.568 4.568 15 H 0.064 0.936 16 C -0.171 4.171 17 N -0.537 5.537 18 Si 0.774 3.226 19 H -0.200 1.200 20 H -0.207 1.207 21 H -0.207 1.207 22 S 0.484 5.516 23 H 0.099 0.901 24 H 0.077 0.923 25 H 0.068 0.932 26 H 0.103 0.897 27 H 0.122 0.878 28 H 0.189 0.811 29 H 0.166 0.834 30 H 0.241 0.759 31 H 0.061 0.939 32 H 0.061 0.939 33 H 0.051 0.949 34 H 0.085 0.915 35 H 0.039 0.961 36 H 0.039 0.961 37 H 0.085 0.915 38 H 0.051 0.949 39 H 0.071 0.929 Dipole moment (debyes) X Y Z Total from point charges -6.319 -16.561 10.702 20.706 hybrid contribution 0.491 1.388 0.742 1.649 sum -5.829 -15.173 11.445 19.879 Atomic orbital electron populations 1.21817 0.93465 1.03167 1.02222 1.20323 0.96733 0.87500 1.04978 1.24740 1.05216 1.03052 0.96942 1.20122 1.04796 0.92995 1.00994 1.20956 0.95818 0.97236 0.94499 1.24481 1.18970 0.99448 0.99328 1.17473 0.77197 0.86394 0.82305 1.90754 1.52156 1.44681 1.58988 1.46045 1.66544 1.17277 1.05911 1.21391 0.97380 0.83160 0.95758 1.18377 0.93739 0.95059 0.87831 1.21683 0.97377 0.95838 1.03008 1.21683 0.96228 0.96992 1.03003 1.21272 1.44877 0.98632 0.91990 0.93600 1.25457 0.95159 0.99323 0.97162 1.69907 1.48320 1.32462 1.03023 0.85670 0.77958 0.80777 0.78179 1.20035 1.20656 1.20662 1.83051 1.59296 1.01364 1.07889 0.90139 0.92276 0.93195 0.89661 0.87798 0.81136 0.83361 0.75943 0.93854 0.93851 0.94913 0.91521 0.96101 0.96098 0.91527 0.94927 0.92943 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.54 9.89 71.98 0.71 -0.82 16 2 C -0.06 -0.63 6.36 29.85 0.19 -0.44 16 3 C -0.18 -3.17 5.53 24.68 0.14 -3.03 16 4 C -0.16 -2.97 9.99 21.08 0.21 -2.76 16 5 C -0.05 -1.29 10.01 21.72 0.22 -1.08 16 6 C -0.30 -9.03 6.45 24.08 0.16 -8.88 16 7 C 0.58 22.16 7.78 86.42 0.67 22.83 16 8 O -0.58 -26.44 16.84 -4.36 -0.07 -26.52 16 9 N -0.71 -26.98 4.95 -467.15 -2.31 -29.29 16 10 C 0.15 6.53 4.50 86.38 0.39 6.92 16 11 C 0.05 2.40 0.50 -52.93 -0.03 2.37 16 12 C -0.12 -5.51 8.08 71.98 0.58 -4.93 16 13 C -0.12 -5.52 8.08 71.98 0.58 -4.94 16 14 C -0.53 -28.33 8.01 25.60 0.21 -28.12 16 15 H 0.05 2.51 7.74 -2.91 -0.02 2.49 16 16 C 0.03 1.53 5.15 84.65 0.44 1.96 16 17 N -0.90 -47.94 9.35 21.45 0.20 -47.74 16 18 Si 0.95 42.78 29.54 68.60 2.03 44.81 16 19 H -0.28 -12.46 7.11 99.48 0.71 -11.76 16 20 H -0.28 -12.45 7.11 99.48 0.71 -11.74 16 21 H -0.28 -12.45 7.11 99.48 0.71 -11.74 16 22 S 0.22 4.83 22.10 -56.49 -1.25 3.58 16 23 H 0.08 0.57 8.14 -2.39 -0.02 0.55 16 24 H 0.06 0.63 8.14 -2.38 -0.02 0.61 16 25 H 0.05 0.61 8.14 -2.39 -0.02 0.60 16 26 H 0.08 0.84 8.14 -2.39 -0.02 0.83 16 27 H 0.10 0.80 8.14 -2.39 -0.02 0.79 16 28 H 0.17 2.14 8.06 -2.91 -0.02 2.12 16 29 H 0.15 3.75 8.06 -2.91 -0.02 3.72 16 30 H 0.40 13.81 5.28 -92.71 -0.49 13.32 16 31 H 0.04 2.03 8.14 -2.38 -0.02 2.01 16 32 H 0.04 2.04 8.14 -2.39 -0.02 2.02 16 33 H 0.03 1.26 6.86 -2.39 -0.02 1.25 16 34 H 0.07 3.33 6.07 -2.39 -0.01 3.31 16 35 H 0.02 0.93 8.14 -2.39 -0.02 0.91 16 36 H 0.02 0.93 8.14 -2.38 -0.02 0.91 16 37 H 0.07 3.33 6.07 -2.39 -0.01 3.31 16 38 H 0.03 1.26 6.86 -2.39 -0.02 1.24 16 39 H 0.26 13.34 8.31 -92.71 -0.77 12.57 16 Total: -1.00 -62.37 331.05 3.61 -58.77 By element: Atomic # 1 Polarization: 16.76 SS G_CDS: 0.55 Total: 17.31 kcal Atomic # 6 Polarization: -25.38 SS G_CDS: 4.46 Total: -20.91 kcal Atomic # 7 Polarization: -74.92 SS G_CDS: -2.11 Total: -77.03 kcal Atomic # 8 Polarization: -26.44 SS G_CDS: -0.07 Total: -26.52 kcal Atomic # 14 Polarization: 42.78 SS G_CDS: 2.03 Total: 44.81 kcal Atomic # 16 Polarization: 4.83 SS G_CDS: -1.25 Total: 3.58 kcal Total: -62.37 3.61 -58.77 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000315508078.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 17.342 kcal (2) G-P(sol) polarization free energy of solvation -62.373 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -45.030 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.606 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -58.766 kcal (6) G-S(sol) free energy of system = (1) + (5) -41.424 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.44 seconds