Wall clock time and date at job start Tue Mar 31 2020 06:09:30 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 C 1.52991 * 109.47443 * 2 1 4 4 C 1.50694 * 109.47007 * 239.99532 * 2 1 3 5 5 H 1.08004 * 120.00245 * 240.00308 * 4 2 1 6 6 C 1.37874 * 120.00036 * 60.00458 * 4 2 1 7 7 N 1.31517 * 120.00100 * 0.02562 * 6 4 2 8 8 Si 1.86805 * 120.00237 * 179.97438 * 6 4 2 9 9 H 1.48491 * 109.46895 * 359.97438 * 8 6 4 10 10 H 1.48501 * 109.47249 * 120.00221 * 8 6 4 11 11 H 1.48507 * 109.46994 * 240.00083 * 8 6 4 12 12 C 1.53004 * 109.46873 * 120.00137 * 2 1 3 13 13 N 1.46504 * 109.46705 * 299.99978 * 12 2 1 14 14 C 1.34777 * 119.99596 * 180.02562 * 13 12 2 15 15 O 1.21606 * 120.00473 * 359.97438 * 14 13 12 16 16 C 1.47394 * 119.99784 * 179.97438 * 14 13 12 17 17 C 1.40222 * 120.21163 * 269.99671 * 16 14 13 18 18 O 1.35652 * 120.13891 * 0.27641 * 17 16 14 19 19 C 1.38595 * 119.72594 * 180.02562 * 17 16 14 20 20 C 1.38176 * 120.15635 * 0.02562 * 19 17 16 21 21 C 1.38369 * 120.43421 * 359.97438 * 20 19 17 22 22 C 1.38172 * 120.27378 * 0.02562 * 21 20 19 23 23 F 1.35093 * 120.08641 * 179.97438 * 22 21 20 24 24 H 1.09003 * 109.47387 * 300.00026 * 1 2 3 25 25 H 1.09005 * 109.47330 * 59.99959 * 1 2 3 26 26 H 1.09000 * 109.47437 * 180.02562 * 1 2 3 27 27 H 1.08997 * 109.47702 * 179.97438 * 3 2 1 28 28 H 1.09005 * 109.47346 * 300.00031 * 3 2 1 29 29 H 1.09003 * 109.47567 * 59.99433 * 3 2 1 30 30 H 0.97003 * 120.00357 * 179.97438 * 7 6 4 31 31 H 1.08997 * 109.47106 * 180.02562 * 12 2 1 32 32 H 1.09000 * 109.47408 * 59.99591 * 12 2 1 33 33 H 0.96999 * 120.00426 * 359.97438 * 13 12 2 34 34 H 0.96710 * 114.00445 * 269.72578 * 18 17 16 35 35 H 1.07999 * 119.92166 * 180.02562 * 19 17 16 36 36 H 1.07994 * 119.78255 * 180.02562 * 20 19 17 37 37 H 1.08004 * 119.86629 * 179.97438 * 21 20 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4424 0.0000 4 6 2.0323 -0.7105 -1.2304 5 1 2.6532 -1.5886 -1.1313 6 6 1.6993 -0.2395 -2.4826 7 7 0.9437 0.8302 -2.6034 8 14 2.3225 -1.1198 -4.0079 9 1 3.1482 -2.2858 -3.6036 10 1 1.1678 -1.5867 -4.8165 11 1 3.1473 -0.1860 -4.8160 12 6 2.0399 -0.7213 1.2493 13 7 1.5515 -0.0306 2.4454 14 6 1.8775 -0.4908 3.6695 15 8 2.5766 -1.4795 3.7812 16 6 1.3866 0.2044 4.8730 17 6 2.1411 1.2366 5.4486 18 8 3.3245 1.6045 4.8970 19 6 1.6701 1.8832 6.5805 20 6 0.4625 1.5120 7.1400 21 6 -0.2873 0.4942 6.5773 22 6 0.1651 -0.1623 5.4489 23 9 -0.5698 -1.1558 4.9031 24 1 -0.3634 0.5138 0.8900 25 1 -0.3634 0.5139 -0.8900 26 1 -0.3634 -1.0276 0.0005 27 1 3.1300 1.4424 0.0005 28 1 1.6767 1.9563 -0.8900 29 1 1.6767 1.9563 0.8899 30 1 0.7096 1.1618 -3.4845 31 1 3.1299 -0.7209 1.2495 32 1 1.6766 -1.7490 1.2493 33 1 0.9942 0.7583 2.3564 34 1 4.0878 1.1247 5.2471 35 1 2.2485 2.6789 7.0262 36 1 0.1011 2.0201 8.0217 37 1 -1.2298 0.2113 7.0225 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000316119103.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:09:30 Heat of formation + Delta-G solvation = -125.846431 kcal Electronic energy + Delta-G solvation = -22154.302634 eV Core-core repulsion = 18617.310825 eV Total energy + Delta-G solvation = -3536.991809 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 281.121 amu Computer time = 0.43 seconds Orbital eigenvalues (eV) -50.11611 -41.41169 -39.92538 -38.14515 -37.62582 -35.08925 -33.02386 -31.88703 -30.82034 -27.62867 -27.60584 -26.99684 -24.69727 -23.74459 -21.86327 -20.70007 -19.84580 -19.01980 -18.09390 -17.81636 -17.51682 -17.11867 -16.68653 -16.58153 -16.03148 -15.98912 -15.68045 -14.98688 -14.88685 -14.78651 -14.42466 -14.08415 -13.30835 -13.25602 -13.15285 -13.08043 -12.77164 -12.70973 -12.59616 -12.31095 -12.16768 -12.04933 -11.54760 -11.40466 -11.05888 -10.74057 -10.43490 -10.10167 -10.05885 -9.75618 -8.04479 -6.20878 -0.18841 0.00539 1.37264 1.40950 1.44530 1.54524 2.12488 2.37580 2.47176 2.82312 3.19044 3.34209 3.54422 3.88523 3.96076 4.24077 4.33504 4.42698 4.57491 4.64464 4.77518 4.89939 4.98721 4.99469 5.05148 5.12945 5.15493 5.22810 5.25384 5.46863 5.61058 5.64241 5.66851 6.07764 6.15156 6.38687 6.43914 6.61185 6.82338 7.05293 7.46945 8.95155 Molecular weight = 281.12amu Principal moments of inertia in cm(-1) A = 0.029477 B = 0.004204 C = 0.004087 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 949.673868 B = 6659.014259 C = 6849.059975 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.120 4.120 2 C 0.051 3.949 3 C -0.118 4.118 4 C -0.529 4.529 5 H 0.046 0.954 6 C 0.028 3.972 7 N -0.900 5.900 8 Si 0.949 3.051 9 H -0.275 1.275 10 H -0.281 1.281 11 H -0.280 1.280 12 C 0.146 3.854 13 N -0.695 5.695 14 C 0.561 3.439 15 O -0.583 6.583 16 C -0.218 4.218 17 C 0.161 3.839 18 O -0.502 6.502 19 C -0.146 4.146 20 C -0.041 4.041 21 C -0.156 4.156 22 C 0.120 3.880 23 F -0.147 7.147 24 H 0.029 0.971 25 H 0.066 0.934 26 H 0.018 0.982 27 H 0.020 0.980 28 H 0.065 0.935 29 H 0.030 0.970 30 H 0.261 0.739 31 H 0.044 0.956 32 H 0.039 0.961 33 H 0.406 0.594 34 H 0.414 0.586 35 H 0.173 0.827 36 H 0.190 0.810 37 H 0.171 0.829 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.052 5.770 20.975 21.851 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.178 4.178 2 C 0.051 3.949 3 C -0.176 4.176 4 C -0.567 4.567 5 H 0.064 0.936 6 C -0.172 4.172 7 N -0.538 5.538 8 Si 0.776 3.224 9 H -0.200 1.200 10 H -0.206 1.206 11 H -0.205 1.205 12 C 0.023 3.977 13 N -0.345 5.345 14 C 0.347 3.653 15 O -0.465 6.465 16 C -0.222 4.222 17 C 0.115 3.885 18 O -0.316 6.316 19 C -0.164 4.164 20 C -0.058 4.058 21 C -0.175 4.175 22 C 0.100 3.900 23 F -0.125 7.125 24 H 0.048 0.952 25 H 0.085 0.915 26 H 0.038 0.962 27 H 0.039 0.961 28 H 0.084 0.916 29 H 0.049 0.951 30 H 0.071 0.929 31 H 0.062 0.938 32 H 0.058 0.942 33 H 0.243 0.757 34 H 0.274 0.726 35 H 0.191 0.809 36 H 0.207 0.793 37 H 0.189 0.811 Dipole moment (debyes) X Y Z Total from point charges -1.992 5.526 20.515 21.339 hybrid contribution 0.394 -1.011 -1.382 1.757 sum -1.599 4.515 19.133 19.723 Atomic orbital electron populations 1.21676 0.97262 0.98662 1.00208 1.18369 0.93164 0.93126 0.90271 1.21646 0.98037 0.97727 1.00170 1.21257 1.31854 1.12211 0.91385 0.93596 1.25483 0.95045 0.95580 1.01062 1.69918 1.36977 1.23296 1.23657 0.85645 0.78135 0.78691 0.79965 1.19967 1.20645 1.20550 1.21394 0.97320 0.95062 0.83958 1.46166 1.51708 1.31348 1.05230 1.18381 0.79635 0.83284 0.83973 1.90744 1.40321 1.27901 1.87509 1.20402 0.98952 1.02688 1.00180 1.18409 0.87554 0.90636 0.91887 1.84714 1.15414 1.64725 1.66720 1.21816 0.98793 1.01844 0.93954 1.21555 0.91648 0.93303 0.99335 1.21506 1.03439 0.98104 0.94422 1.17909 0.88786 0.88330 0.94979 1.91512 1.76023 1.59389 1.85587 0.95165 0.91522 0.96241 0.96072 0.91629 0.95123 0.92933 0.93762 0.94214 0.75689 0.72575 0.80920 0.79331 0.81140 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -5.69 8.08 71.98 0.58 -5.11 16 2 C 0.05 2.51 0.50 -52.93 -0.03 2.48 16 3 C -0.12 -5.54 8.08 71.98 0.58 -4.96 16 4 C -0.53 -28.80 8.01 25.60 0.21 -28.60 16 5 H 0.05 2.55 7.74 -2.91 -0.02 2.53 16 6 C 0.03 1.51 5.15 84.65 0.44 1.94 16 7 N -0.90 -48.93 9.35 21.45 0.20 -48.73 16 8 Si 0.95 43.31 29.54 68.60 2.03 45.34 16 9 H -0.27 -12.53 7.11 99.48 0.71 -11.83 16 10 H -0.28 -12.57 7.11 99.48 0.71 -11.86 16 11 H -0.28 -12.49 7.11 99.48 0.71 -11.78 16 12 C 0.15 6.71 4.50 86.38 0.39 7.10 16 13 N -0.70 -27.65 4.96 -466.39 -2.31 -29.96 16 14 C 0.56 21.95 6.43 86.65 0.56 22.51 16 15 O -0.58 -26.96 17.11 -4.05 -0.07 -27.03 16 16 C -0.22 -6.51 5.64 -19.97 -0.11 -6.62 16 17 C 0.16 3.72 6.72 22.84 0.15 3.87 16 18 O -0.50 -11.79 12.95 -89.67 -1.16 -12.95 16 19 C -0.15 -2.03 9.97 22.34 0.22 -1.81 16 20 C -0.04 -0.43 10.02 22.29 0.22 -0.20 16 21 C -0.16 -2.49 10.00 22.29 0.22 -2.26 16 22 C 0.12 3.16 7.29 22.67 0.17 3.33 16 23 F -0.15 -4.63 16.83 44.97 0.76 -3.88 16 24 H 0.03 1.23 6.86 -2.39 -0.02 1.22 16 25 H 0.07 3.44 6.07 -2.38 -0.01 3.42 16 26 H 0.02 0.90 8.14 -2.39 -0.02 0.88 16 27 H 0.02 0.97 8.14 -2.39 -0.02 0.95 16 28 H 0.06 3.37 6.07 -2.38 -0.01 3.35 16 29 H 0.03 1.25 6.86 -2.39 -0.02 1.23 16 30 H 0.26 13.58 8.31 -92.71 -0.77 12.80 16 31 H 0.04 2.12 8.14 -2.39 -0.02 2.10 16 32 H 0.04 1.94 8.14 -2.39 -0.02 1.92 16 33 H 0.41 14.93 6.15 -92.71 -0.57 14.36 16 34 H 0.41 6.55 9.06 -74.05 -0.67 5.88 16 35 H 0.17 1.33 8.06 -2.91 -0.02 1.31 16 36 H 0.19 0.25 8.06 -2.91 -0.02 0.23 16 37 H 0.17 1.73 8.06 -2.91 -0.02 1.71 16 Total: -1.00 -70.04 316.32 2.92 -67.13 By element: Atomic # 1 Polarization: 18.53 SS G_CDS: -0.12 Total: 18.41 kcal Atomic # 6 Polarization: -11.92 SS G_CDS: 3.60 Total: -8.32 kcal Atomic # 7 Polarization: -76.58 SS G_CDS: -2.11 Total: -78.69 kcal Atomic # 8 Polarization: -38.75 SS G_CDS: -1.23 Total: -39.98 kcal Atomic # 9 Polarization: -4.63 SS G_CDS: 0.76 Total: -3.88 kcal Atomic # 14 Polarization: 43.31 SS G_CDS: 2.03 Total: 45.34 kcal Total: -70.04 2.92 -67.13 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000316119103.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -58.721 kcal (2) G-P(sol) polarization free energy of solvation -70.043 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -128.763 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.917 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -67.126 kcal (6) G-S(sol) free energy of system = (1) + (5) -125.846 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.43 seconds