Wall clock time and date at job start Tue Mar 31 2020 06:09:39 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52996 * 1 3 3 C 1.52991 * 109.47580 * 2 1 4 4 C 1.50701 * 109.47029 * 239.99879 * 2 1 3 5 5 H 1.07998 * 119.99992 * 240.00095 * 4 2 1 6 6 C 1.37881 * 119.99805 * 60.00274 * 4 2 1 7 7 N 1.31510 * 120.00284 * 359.97438 * 6 4 2 8 8 Si 1.86799 * 119.99764 * 180.02562 * 6 4 2 9 9 H 1.48499 * 109.47386 * 359.97438 * 8 6 4 10 10 H 1.48497 * 109.47068 * 120.00032 * 8 6 4 11 11 H 1.48502 * 109.47120 * 239.99598 * 8 6 4 12 12 C 1.53001 * 109.47283 * 120.00114 * 2 1 3 13 13 N 1.46494 * 109.47041 * 299.99910 * 12 2 1 14 14 C 1.34780 * 120.00331 * 179.97438 * 13 12 2 15 15 O 1.21612 * 119.99747 * 359.97438 * 14 13 12 16 16 C 1.47413 * 120.00211 * 179.97438 * 14 13 12 17 17 C 1.39775 * 120.16469 * 0.02562 * 16 14 13 18 18 C 1.37680 * 119.92928 * 179.97438 * 17 16 14 19 19 C 1.38839 * 120.27341 * 359.97438 * 18 17 16 20 20 F 1.35101 * 119.83093 * 180.02562 * 19 18 17 21 21 C 1.38344 * 120.33867 * 0.04468 * 19 18 17 22 22 C 1.38577 * 120.05941 * 359.95530 * 21 19 18 23 23 O 1.35657 * 120.13285 * 180.29774 * 22 21 19 24 24 H 1.09006 * 109.46724 * 300.00336 * 1 2 3 25 25 H 1.09001 * 109.47012 * 59.99653 * 1 2 3 26 26 H 1.08997 * 109.47721 * 179.97438 * 1 2 3 27 27 H 1.08998 * 109.47687 * 180.02562 * 3 2 1 28 28 H 1.09001 * 109.47231 * 300.00213 * 3 2 1 29 29 H 1.09006 * 109.47367 * 60.00057 * 3 2 1 30 30 H 0.96995 * 120.00472 * 180.02562 * 7 6 4 31 31 H 1.08997 * 109.47610 * 179.97438 * 12 2 1 32 32 H 1.09005 * 109.47313 * 59.99739 * 12 2 1 33 33 H 0.96999 * 120.00392 * 359.97438 * 13 12 2 34 34 H 1.07993 * 120.03465 * 0.02562 * 17 16 14 35 35 H 1.08000 * 119.86165 * 179.97438 * 18 17 16 36 36 H 1.08006 * 119.97085 * 179.97438 * 21 19 18 37 37 H 0.96708 * 114.00176 * 269.71893 * 23 22 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4424 0.0000 4 6 2.0323 -0.7104 -1.2305 5 1 2.6532 -1.5885 -1.1314 6 6 1.6992 -0.2393 -2.4827 7 7 0.9428 0.8297 -2.6034 8 14 2.3212 -1.1204 -4.0079 9 1 3.1463 -2.2871 -3.6038 10 1 1.1659 -1.5866 -4.8160 11 1 3.1465 -0.1874 -4.8166 12 6 2.0400 -0.7213 1.2492 13 7 1.5517 -0.0307 2.4454 14 6 1.8769 -0.4914 3.6695 15 8 2.5753 -1.4807 3.7811 16 6 1.3860 0.2038 4.8731 17 6 0.5826 1.3409 4.7489 18 6 0.1264 1.9862 5.8763 19 6 0.4604 1.5119 7.1377 20 9 0.0074 2.1517 8.2380 21 6 1.2552 0.3877 7.2737 22 6 1.7220 -0.2726 6.1483 23 8 2.4965 -1.3786 6.2799 24 1 -0.3633 0.5139 0.8900 25 1 -0.3633 0.5139 -0.8900 26 1 -0.3634 -1.0276 -0.0005 27 1 3.1300 1.4424 -0.0005 28 1 1.6767 1.9563 -0.8900 29 1 1.6768 1.9563 0.8900 30 1 0.7081 1.1609 -3.4844 31 1 3.1300 -0.7217 1.2490 32 1 1.6766 -1.7490 1.2493 33 1 0.9944 0.7582 2.3564 34 1 0.3194 1.7124 3.7696 35 1 -0.4939 2.8649 5.7790 36 1 1.5118 0.0242 8.2578 37 1 3.4448 -1.1927 6.3165 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000316146512.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:09:39 Heat of formation + Delta-G solvation = -103.900268 kcal Electronic energy + Delta-G solvation = -21752.641793 eV Core-core repulsion = 18216.601641 eV Total energy + Delta-G solvation = -3536.040152 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 281.121 amu Computer time = 0.39 seconds Orbital eigenvalues (eV) -49.24279 -40.38071 -38.46320 -36.75755 -36.28275 -33.37344 -31.50736 -30.54078 -30.00341 -25.78448 -25.77113 -25.10333 -23.62288 -22.86533 -20.43189 -19.09865 -18.70332 -17.71359 -17.03013 -16.65533 -15.91355 -15.88729 -15.17725 -15.03657 -14.79124 -14.58301 -14.28699 -13.97035 -13.57756 -13.03414 -12.89539 -12.84818 -12.22863 -12.08425 -11.75445 -11.42028 -11.23578 -11.00645 -10.90678 -10.68610 -10.43028 -10.22998 -9.67966 -9.62728 -9.30082 -9.29322 -8.92154 -8.81939 -8.47932 -8.33713 -6.05183 -4.15146 0.47955 0.84557 2.77493 3.25596 3.34395 3.38602 3.57897 3.59290 3.74733 4.17120 4.37903 4.44293 4.64476 4.81700 5.03952 5.21926 5.39551 5.53746 5.68259 5.84890 5.94193 6.20210 6.28631 6.39105 6.46861 6.72864 6.76823 6.88862 6.95853 6.97658 7.31098 7.51398 7.51525 7.66535 7.97056 7.97306 8.11081 8.34834 8.61457 8.85764 9.50973 10.96332 Molecular weight = 281.12amu Principal moments of inertia in cm(-1) A = 0.034106 B = 0.003694 C = 0.003412 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 820.776620 B = 7577.573071 C = 8204.784149 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.131 4.131 2 C 0.055 3.945 3 C -0.131 4.131 4 C -0.506 4.506 5 H 0.058 0.942 6 C 0.066 3.934 7 N -0.886 5.886 8 Si 0.893 3.107 9 H -0.273 1.273 10 H -0.284 1.284 11 H -0.284 1.284 12 C 0.132 3.868 13 N -0.711 5.711 14 C 0.547 3.453 15 O -0.532 6.532 16 C -0.167 4.167 17 C -0.042 4.042 18 C -0.170 4.170 19 C 0.134 3.866 20 F -0.134 7.134 21 C -0.195 4.195 22 C 0.196 3.804 23 O -0.471 6.471 24 H 0.005 0.995 25 H 0.086 0.914 26 H 0.027 0.973 27 H 0.027 0.973 28 H 0.086 0.914 29 H 0.005 0.995 30 H 0.259 0.741 31 H 0.057 0.943 32 H 0.057 0.943 33 H 0.396 0.604 34 H 0.143 0.857 35 H 0.144 0.856 36 H 0.146 0.854 37 H 0.399 0.601 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.962 4.316 16.321 16.909 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.189 4.189 2 C 0.054 3.946 3 C -0.188 4.188 4 C -0.544 4.544 5 H 0.077 0.923 6 C -0.135 4.135 7 N -0.524 5.524 8 Si 0.721 3.279 9 H -0.197 1.197 10 H -0.211 1.211 11 H -0.211 1.211 12 C 0.010 3.990 13 N -0.363 5.363 14 C 0.332 3.668 15 O -0.410 6.410 16 C -0.171 4.171 17 C -0.061 4.061 18 C -0.189 4.189 19 C 0.115 3.885 20 F -0.113 7.113 21 C -0.215 4.215 22 C 0.148 3.852 23 O -0.283 6.283 24 H 0.024 0.976 25 H 0.105 0.895 26 H 0.047 0.953 27 H 0.046 0.954 28 H 0.105 0.895 29 H 0.024 0.976 30 H 0.070 0.930 31 H 0.075 0.925 32 H 0.075 0.925 33 H 0.232 0.768 34 H 0.161 0.839 35 H 0.162 0.838 36 H 0.164 0.836 37 H 0.258 0.742 Dipole moment (debyes) X Y Z Total from point charges -1.067 3.424 16.243 16.634 hybrid contribution 0.327 0.325 -0.669 0.813 sum -0.740 3.749 15.574 16.036 Atomic orbital electron populations 1.21837 0.97721 0.99286 1.00039 1.18377 0.92840 0.92790 0.90599 1.21833 0.98650 0.98315 1.00042 1.21017 1.31459 1.12109 0.89823 0.92330 1.24877 0.94834 0.94913 0.98875 1.69802 1.36677 1.22803 1.23161 0.86513 0.78652 0.79765 0.82953 1.19739 1.21050 1.21064 1.21759 0.98235 0.95891 0.83112 1.46263 1.52451 1.31665 1.05872 1.17917 0.81334 0.84414 0.83095 1.90788 1.38039 1.25549 1.86673 1.20722 1.03872 0.98142 0.94395 1.21185 0.93256 0.92527 0.99138 1.21086 1.04273 1.03042 0.90508 1.17636 0.95948 0.92049 0.82896 1.91526 1.87042 1.80683 1.52034 1.21348 1.03276 0.96484 1.00376 1.18107 0.92322 0.85080 0.89649 1.84750 1.21496 1.26948 1.95075 0.97610 0.89528 0.95342 0.95368 0.89535 0.97616 0.93041 0.92508 0.92490 0.76786 0.83900 0.83807 0.83599 0.74200 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -2.88 8.08 37.16 0.30 -2.58 16 2 C 0.05 1.23 0.50 -155.67 -0.08 1.16 16 3 C -0.13 -2.85 8.08 37.15 0.30 -2.55 16 4 C -0.51 -13.01 8.01 -34.44 -0.28 -13.28 16 5 H 0.06 1.53 7.74 -52.49 -0.41 1.12 16 6 C 0.07 1.71 5.15 -17.82 -0.09 1.62 16 7 N -0.89 -23.16 9.35 55.43 0.52 -22.64 16 8 Si 0.89 20.45 29.54 -169.99 -5.02 15.43 16 9 H -0.27 -6.26 7.11 56.52 0.40 -5.86 16 10 H -0.28 -6.52 7.11 56.52 0.40 -6.12 16 11 H -0.28 -6.51 7.11 56.52 0.40 -6.11 16 12 C 0.13 2.74 4.50 -4.04 -0.02 2.73 16 13 N -0.71 -12.34 4.91 -61.39 -0.30 -12.64 16 14 C 0.55 9.45 7.76 -12.52 -0.10 9.35 16 15 O -0.53 -10.86 15.16 -16.63 -0.25 -11.12 16 16 C -0.17 -2.29 5.89 -104.84 -0.62 -2.91 16 17 C -0.04 -0.46 9.53 -39.21 -0.37 -0.84 16 18 C -0.17 -1.64 10.00 -39.56 -0.40 -2.04 16 19 C 0.13 1.39 7.30 -39.32 -0.29 1.10 16 20 F -0.13 -1.40 17.26 2.25 0.04 -1.36 16 21 C -0.20 -2.05 9.95 -39.42 -0.39 -2.44 16 22 C 0.20 2.47 6.71 -38.71 -0.26 2.21 16 23 O -0.47 -6.12 11.57 -40.57 -0.47 -6.59 16 24 H 0.00 0.09 6.86 -51.93 -0.36 -0.26 16 25 H 0.09 2.11 6.07 -51.93 -0.32 1.79 16 26 H 0.03 0.62 8.14 -51.93 -0.42 0.20 16 27 H 0.03 0.61 8.14 -51.93 -0.42 0.18 16 28 H 0.09 2.10 6.07 -51.93 -0.32 1.78 16 29 H 0.00 0.09 6.86 -51.93 -0.36 -0.26 16 30 H 0.26 6.55 8.31 -40.82 -0.34 6.21 16 31 H 0.06 1.23 8.14 -51.93 -0.42 0.81 16 32 H 0.06 1.25 8.14 -51.93 -0.42 0.83 16 33 H 0.40 6.08 4.19 -40.82 -0.17 5.91 16 34 H 0.14 1.36 6.40 -52.49 -0.34 1.03 16 35 H 0.14 1.05 8.06 -52.49 -0.42 0.63 16 36 H 0.15 1.25 8.06 -52.48 -0.42 0.83 16 37 H 0.40 3.56 9.06 45.56 0.41 3.97 16 LS Contribution 310.82 15.07 4.68 4.68 Total: -1.00 -29.42 310.82 -6.60 -36.02 By element: Atomic # 1 Polarization: 10.20 SS G_CDS: -3.51 Total: 6.69 kcal Atomic # 6 Polarization: -6.19 SS G_CDS: -2.29 Total: -8.47 kcal Atomic # 7 Polarization: -35.50 SS G_CDS: 0.22 Total: -35.29 kcal Atomic # 8 Polarization: -16.98 SS G_CDS: -0.72 Total: -17.71 kcal Atomic # 9 Polarization: -1.40 SS G_CDS: 0.04 Total: -1.36 kcal Atomic # 14 Polarization: 20.45 SS G_CDS: -5.02 Total: 15.43 kcal Total LS contribution 4.68 Total: 4.68 kcal Total: -29.42 -6.60 -36.02 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000316146512.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -67.877 kcal (2) G-P(sol) polarization free energy of solvation -29.419 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -97.296 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.604 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.023 kcal (6) G-S(sol) free energy of system = (1) + (5) -103.900 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.39 seconds