Wall clock time and date at job start Tue Mar 31 2020 06:09:38 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52996 * 1 3 3 C 1.52991 * 109.47580 * 2 1 4 4 C 1.50701 * 109.47029 * 239.99879 * 2 1 3 5 5 H 1.07998 * 119.99992 * 240.00095 * 4 2 1 6 6 C 1.37881 * 119.99805 * 60.00274 * 4 2 1 7 7 N 1.31510 * 120.00284 * 359.97438 * 6 4 2 8 8 Si 1.86799 * 119.99764 * 180.02562 * 6 4 2 9 9 H 1.48499 * 109.47386 * 359.97438 * 8 6 4 10 10 H 1.48497 * 109.47068 * 120.00032 * 8 6 4 11 11 H 1.48502 * 109.47120 * 239.99598 * 8 6 4 12 12 C 1.53001 * 109.47283 * 120.00114 * 2 1 3 13 13 N 1.46494 * 109.47041 * 299.99910 * 12 2 1 14 14 C 1.34780 * 120.00331 * 179.97438 * 13 12 2 15 15 O 1.21612 * 119.99747 * 359.97438 * 14 13 12 16 16 C 1.47413 * 120.00211 * 179.97438 * 14 13 12 17 17 C 1.39775 * 120.16469 * 0.02562 * 16 14 13 18 18 C 1.37680 * 119.92928 * 179.97438 * 17 16 14 19 19 C 1.38839 * 120.27341 * 359.97438 * 18 17 16 20 20 F 1.35101 * 119.83093 * 180.02562 * 19 18 17 21 21 C 1.38344 * 120.33867 * 0.04468 * 19 18 17 22 22 C 1.38577 * 120.05941 * 359.95530 * 21 19 18 23 23 O 1.35657 * 120.13285 * 180.29774 * 22 21 19 24 24 H 1.09006 * 109.46724 * 300.00336 * 1 2 3 25 25 H 1.09001 * 109.47012 * 59.99653 * 1 2 3 26 26 H 1.08997 * 109.47721 * 179.97438 * 1 2 3 27 27 H 1.08998 * 109.47687 * 180.02562 * 3 2 1 28 28 H 1.09001 * 109.47231 * 300.00213 * 3 2 1 29 29 H 1.09006 * 109.47367 * 60.00057 * 3 2 1 30 30 H 0.96995 * 120.00472 * 180.02562 * 7 6 4 31 31 H 1.08997 * 109.47610 * 179.97438 * 12 2 1 32 32 H 1.09005 * 109.47313 * 59.99739 * 12 2 1 33 33 H 0.96999 * 120.00392 * 359.97438 * 13 12 2 34 34 H 1.07993 * 120.03465 * 0.02562 * 17 16 14 35 35 H 1.08000 * 119.86165 * 179.97438 * 18 17 16 36 36 H 1.08006 * 119.97085 * 179.97438 * 21 19 18 37 37 H 0.96708 * 114.00176 * 269.71893 * 23 22 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4424 0.0000 4 6 2.0323 -0.7104 -1.2305 5 1 2.6532 -1.5885 -1.1314 6 6 1.6992 -0.2393 -2.4827 7 7 0.9428 0.8297 -2.6034 8 14 2.3212 -1.1204 -4.0079 9 1 3.1463 -2.2871 -3.6038 10 1 1.1659 -1.5866 -4.8160 11 1 3.1465 -0.1874 -4.8166 12 6 2.0400 -0.7213 1.2492 13 7 1.5517 -0.0307 2.4454 14 6 1.8769 -0.4914 3.6695 15 8 2.5753 -1.4807 3.7811 16 6 1.3860 0.2038 4.8731 17 6 0.5826 1.3409 4.7489 18 6 0.1264 1.9862 5.8763 19 6 0.4604 1.5119 7.1377 20 9 0.0074 2.1517 8.2380 21 6 1.2552 0.3877 7.2737 22 6 1.7220 -0.2726 6.1483 23 8 2.4965 -1.3786 6.2799 24 1 -0.3633 0.5139 0.8900 25 1 -0.3633 0.5139 -0.8900 26 1 -0.3634 -1.0276 -0.0005 27 1 3.1300 1.4424 -0.0005 28 1 1.6767 1.9563 -0.8900 29 1 1.6768 1.9563 0.8900 30 1 0.7081 1.1609 -3.4844 31 1 3.1300 -0.7217 1.2490 32 1 1.6766 -1.7490 1.2493 33 1 0.9944 0.7582 2.3564 34 1 0.3194 1.7124 3.7696 35 1 -0.4939 2.8649 5.7790 36 1 1.5118 0.0242 8.2578 37 1 3.4448 -1.1927 6.3165 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000316146512.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:09:38 Heat of formation + Delta-G solvation = -121.870230 kcal Electronic energy + Delta-G solvation = -21753.421029 eV Core-core repulsion = 18216.601641 eV Total energy + Delta-G solvation = -3536.819388 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 281.121 amu Computer time = 0.45 seconds Orbital eigenvalues (eV) -50.05477 -41.48808 -39.72370 -38.01289 -37.62361 -35.01001 -33.01135 -31.75459 -30.96652 -27.55022 -27.49454 -26.85793 -24.66274 -23.81609 -21.72723 -20.64964 -19.81550 -18.95165 -17.94250 -17.75737 -17.58090 -16.74364 -16.62027 -16.41883 -16.24587 -15.86829 -15.40688 -14.93792 -14.71127 -14.65707 -14.49907 -14.05390 -13.93148 -13.22294 -13.09752 -12.97880 -12.67722 -12.57437 -12.56325 -12.24019 -12.13278 -11.94547 -11.47726 -11.27311 -10.85800 -10.67213 -10.39254 -10.15583 -10.01292 -9.69893 -8.01710 -6.16967 -0.45807 0.03391 1.41950 1.46621 1.55566 1.72068 2.23378 2.49127 2.55459 2.84214 3.22204 3.32426 3.62092 3.72318 3.91397 4.15775 4.41676 4.52078 4.55874 4.67169 4.75632 4.90282 4.98085 5.02200 5.06434 5.08457 5.15062 5.20684 5.35997 5.57376 5.60393 5.68510 5.68885 6.16824 6.22453 6.44583 6.63031 6.71654 6.87106 7.26788 7.50797 8.97306 Molecular weight = 281.12amu Principal moments of inertia in cm(-1) A = 0.034106 B = 0.003694 C = 0.003412 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 820.776620 B = 7577.573071 C = 8204.784149 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.122 4.122 2 C 0.050 3.950 3 C -0.121 4.121 4 C -0.528 4.528 5 H 0.044 0.956 6 C 0.030 3.970 7 N -0.898 5.898 8 Si 0.944 3.056 9 H -0.276 1.276 10 H -0.282 1.282 11 H -0.281 1.281 12 C 0.149 3.851 13 N -0.705 5.705 14 C 0.547 3.453 15 O -0.571 6.571 16 C -0.190 4.190 17 C -0.036 4.036 18 C -0.160 4.160 19 C 0.139 3.861 20 F -0.132 7.132 21 C -0.191 4.191 22 C 0.187 3.813 23 O -0.490 6.490 24 H 0.038 0.962 25 H 0.063 0.937 26 H 0.017 0.983 27 H 0.019 0.981 28 H 0.063 0.937 29 H 0.039 0.961 30 H 0.260 0.740 31 H 0.042 0.958 32 H 0.038 0.962 33 H 0.407 0.593 34 H 0.159 0.841 35 H 0.174 0.826 36 H 0.164 0.836 37 H 0.412 0.588 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.810 5.698 17.675 18.659 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.179 4.179 2 C 0.049 3.951 3 C -0.179 4.179 4 C -0.567 4.567 5 H 0.062 0.938 6 C -0.170 4.170 7 N -0.537 5.537 8 Si 0.771 3.229 9 H -0.201 1.201 10 H -0.208 1.208 11 H -0.207 1.207 12 C 0.025 3.975 13 N -0.357 5.357 14 C 0.335 3.665 15 O -0.452 6.452 16 C -0.194 4.194 17 C -0.055 4.055 18 C -0.179 4.179 19 C 0.120 3.880 20 F -0.110 7.110 21 C -0.210 4.210 22 C 0.140 3.860 23 O -0.304 6.304 24 H 0.057 0.943 25 H 0.082 0.918 26 H 0.036 0.964 27 H 0.038 0.962 28 H 0.082 0.918 29 H 0.058 0.942 30 H 0.070 0.930 31 H 0.060 0.940 32 H 0.056 0.944 33 H 0.246 0.754 34 H 0.177 0.823 35 H 0.191 0.809 36 H 0.182 0.818 37 H 0.273 0.727 Dipole moment (debyes) X Y Z Total from point charges -1.923 4.834 17.610 18.363 hybrid contribution 0.581 -0.082 -0.996 1.156 sum -1.342 4.752 16.614 17.332 Atomic orbital electron populations 1.21683 0.97068 0.98690 1.00503 1.18378 0.93307 0.93186 0.90209 1.21671 0.98011 0.97656 1.00513 1.21299 1.31663 1.12133 0.91581 0.93799 1.25419 0.95149 0.95587 1.00867 1.69898 1.36953 1.23271 1.23531 0.85731 0.78112 0.78748 0.80348 1.20101 1.20803 1.20712 1.21298 0.97195 0.95051 0.83957 1.46037 1.52730 1.31876 1.05081 1.18442 0.80344 0.83908 0.83792 1.90762 1.39798 1.27393 1.87246 1.20505 1.06253 0.99718 0.92943 1.21327 0.92294 0.91367 1.00471 1.21352 1.03591 1.03391 0.89526 1.17757 0.95304 0.91717 0.83261 1.91541 1.86898 1.80554 1.52036 1.21435 1.02791 0.96289 1.00468 1.18247 0.92601 0.85191 0.89941 1.84704 1.22753 1.27796 1.95114 0.94285 0.91787 0.96426 0.96229 0.91845 0.94223 0.93033 0.93999 0.94394 0.75421 0.82333 0.80871 0.81840 0.72687 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -5.26 8.08 71.98 0.58 -4.67 16 2 C 0.05 2.25 0.50 -52.93 -0.03 2.22 16 3 C -0.12 -5.15 8.08 71.98 0.58 -4.57 16 4 C -0.53 -27.57 8.01 25.60 0.21 -27.36 16 5 H 0.04 2.36 7.74 -2.91 -0.02 2.33 16 6 C 0.03 1.54 5.15 84.66 0.44 1.97 16 7 N -0.90 -46.95 9.35 21.45 0.20 -46.75 16 8 Si 0.94 42.17 29.54 68.60 2.03 44.20 16 9 H -0.28 -12.39 7.11 99.48 0.71 -11.68 16 10 H -0.28 -12.44 7.11 99.48 0.71 -11.73 16 11 H -0.28 -12.35 7.11 99.48 0.71 -11.65 16 12 C 0.15 6.22 4.50 86.38 0.39 6.61 16 13 N -0.71 -23.76 4.91 -466.38 -2.29 -26.05 16 14 C 0.55 18.63 7.76 86.66 0.67 19.30 16 15 O -0.57 -23.66 15.16 16.87 0.26 -23.40 16 16 C -0.19 -4.91 5.89 -20.01 -0.12 -5.03 16 17 C -0.04 -0.68 9.53 22.51 0.21 -0.46 16 18 C -0.16 -2.47 10.00 22.28 0.22 -2.24 16 19 C 0.14 2.41 7.30 22.44 0.16 2.58 16 20 F -0.13 -2.29 17.26 44.97 0.78 -1.52 16 21 C -0.19 -3.53 9.95 22.38 0.22 -3.31 16 22 C 0.19 4.46 6.71 22.83 0.15 4.62 16 23 O -0.49 -12.53 11.57 -68.78 -0.80 -13.32 16 24 H 0.04 1.38 6.86 -2.38 -0.02 1.36 16 25 H 0.06 3.08 6.07 -2.39 -0.01 3.07 16 26 H 0.02 0.75 8.14 -2.39 -0.02 0.73 16 27 H 0.02 0.82 8.14 -2.39 -0.02 0.80 16 28 H 0.06 3.03 6.07 -2.39 -0.01 3.02 16 29 H 0.04 1.37 6.86 -2.38 -0.02 1.36 16 30 H 0.26 13.09 8.31 -92.71 -0.77 12.32 16 31 H 0.04 1.86 8.14 -2.39 -0.02 1.84 16 32 H 0.04 1.71 8.14 -2.38 -0.02 1.69 16 33 H 0.41 11.55 4.19 -92.71 -0.39 11.16 16 34 H 0.16 2.43 6.40 -2.91 -0.02 2.41 16 35 H 0.17 1.67 8.06 -2.91 -0.02 1.65 16 36 H 0.16 2.38 8.06 -2.91 -0.02 2.36 16 37 H 0.41 7.34 9.06 -74.05 -0.67 6.67 16 Total: -1.00 -63.44 310.82 3.94 -59.50 By element: Atomic # 1 Polarization: 17.64 SS G_CDS: 0.06 Total: 17.71 kcal Atomic # 6 Polarization: -14.06 SS G_CDS: 3.70 Total: -10.36 kcal Atomic # 7 Polarization: -70.71 SS G_CDS: -2.09 Total: -72.80 kcal Atomic # 8 Polarization: -36.19 SS G_CDS: -0.54 Total: -36.73 kcal Atomic # 9 Polarization: -2.29 SS G_CDS: 0.78 Total: -1.52 kcal Atomic # 14 Polarization: 42.17 SS G_CDS: 2.03 Total: 44.20 kcal Total: -63.44 3.94 -59.50 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000316146512.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -62.366 kcal (2) G-P(sol) polarization free energy of solvation -63.440 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -125.805 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.935 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -59.504 kcal (6) G-S(sol) free energy of system = (1) + (5) -121.870 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.45 seconds