Wall clock time and date at job start Tue Mar 31 2020 06:09:33 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 C 1.53005 * 109.46800 * 2 1 4 4 C 1.50701 * 109.47145 * 240.00569 * 2 1 3 5 5 H 1.08009 * 119.99651 * 241.34574 * 4 2 1 6 6 C 1.37868 * 120.00338 * 61.34033 * 4 2 1 7 7 N 1.31521 * 120.00453 * 193.97821 * 6 4 2 8 8 Si 1.86801 * 120.00217 * 13.98060 * 6 4 2 9 9 H 1.48505 * 109.47124 * 84.54309 * 8 6 4 10 10 H 1.48497 * 109.47512 * 204.54782 * 8 6 4 11 11 H 1.48505 * 109.46983 * 324.55043 * 8 6 4 12 12 C 1.52998 * 109.47584 * 119.99837 * 2 1 3 13 13 N 1.46496 * 109.47329 * 300.00315 * 12 2 1 14 14 C 1.34773 * 120.00133 * 180.26769 * 13 12 2 15 15 O 1.21601 * 120.00124 * 359.73285 * 14 13 12 16 16 C 1.47452 * 120.00032 * 179.71990 * 14 13 12 17 17 C 1.39812 * 120.11023 * 359.73277 * 16 14 13 18 18 C 1.37610 * 119.93414 * 179.78301 * 17 16 14 19 19 C 1.39094 * 120.16145 * 0.46522 * 18 17 16 20 20 O 1.35707 * 119.88975 * 179.76106 * 19 18 17 21 21 C 1.38840 * 120.22072 * 359.78846 * 19 18 17 22 22 C 1.38054 * 120.06515 * 359.97417 * 21 19 18 23 23 F 1.35100 * 120.08301 * 179.97438 * 22 21 19 24 24 H 1.08998 * 109.47272 * 309.36723 * 1 2 3 25 25 H 1.08992 * 109.47141 * 69.36784 * 1 2 3 26 26 H 1.09004 * 109.46813 * 189.36595 * 1 2 3 27 27 H 1.09008 * 109.47129 * 180.02562 * 3 2 1 28 28 H 1.08998 * 109.47398 * 300.00135 * 3 2 1 29 29 H 1.08999 * 109.47102 * 60.00497 * 3 2 1 30 30 H 0.96991 * 120.00307 * 180.02562 * 7 6 4 31 31 H 1.08999 * 109.47488 * 180.02562 * 12 2 1 32 32 H 1.09007 * 109.46656 * 60.00290 * 12 2 1 33 33 H 0.97008 * 119.99791 * 359.97438 * 13 12 2 34 34 H 1.08004 * 120.03318 * 0.02562 * 17 16 14 35 35 H 1.08001 * 119.91929 * 180.20672 * 18 17 16 36 36 H 0.96699 * 114.00731 * 270.02056 * 20 19 18 37 37 H 1.08000 * 119.96454 * 179.97438 * 21 19 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4426 0.0000 4 6 2.0324 -0.7103 -1.2305 5 1 2.6353 -1.6010 -1.1316 6 6 1.7223 -0.2233 -2.4825 7 7 1.9157 -0.9724 -3.5461 8 14 1.0275 1.5007 -2.6684 9 1 2.1416 2.4818 -2.7083 10 1 0.2468 1.5866 -3.9287 11 1 0.1417 1.8043 -1.5158 12 6 2.0401 -0.7212 1.2492 13 7 1.5518 -0.0307 2.4454 14 6 1.8820 -0.4879 3.6694 15 8 2.5812 -1.4765 3.7810 16 6 1.3956 0.2107 4.8734 17 6 0.5963 1.3510 4.7478 18 6 0.1407 1.9976 5.8738 19 6 0.4812 1.5252 7.1370 20 8 0.0328 2.1700 8.2437 21 6 1.2789 0.3965 7.2693 22 6 1.7371 -0.2622 6.1459 23 9 2.5136 -1.3602 6.2743 24 1 -0.3634 0.6518 0.7945 25 1 -0.3633 0.3621 -0.9617 26 1 -0.3633 -1.0140 0.1672 27 1 3.1300 1.4426 -0.0005 28 1 1.6766 1.9564 -0.8899 29 1 1.6767 1.9563 0.8900 30 1 1.6979 -0.6297 -4.4269 31 1 3.1301 -0.7208 1.2494 32 1 1.6768 -1.7489 1.2492 33 1 0.9943 0.7582 2.3564 34 1 0.3336 1.7217 3.7680 35 1 -0.4794 2.8765 5.7765 36 1 0.6245 2.8663 8.5602 37 1 1.5411 0.0335 8.2521 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000316208959.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:09:33 Heat of formation + Delta-G solvation = -82.897767 kcal Electronic energy + Delta-G solvation = -21855.595339 eV Core-core repulsion = 18320.465924 eV Total energy + Delta-G solvation = -3535.129415 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 281.121 amu Computer time = 0.46 seconds Orbital eigenvalues (eV) -48.97528 -40.28290 -39.16960 -36.99286 -36.50167 -33.46805 -31.69876 -31.02644 -30.26906 -26.46753 -26.13166 -24.99312 -23.76948 -22.91464 -20.58909 -19.39147 -19.03635 -17.86437 -16.93969 -16.64076 -16.14003 -15.85885 -15.56007 -15.17337 -14.94746 -14.75335 -14.66463 -13.99332 -13.65893 -13.27933 -12.99628 -12.93643 -12.58720 -12.27307 -12.19865 -12.09136 -12.03943 -11.34843 -11.20249 -10.48388 -10.36535 -10.21643 -10.11339 -9.71791 -9.38133 -9.16800 -9.00883 -8.73145 -8.58752 -8.48009 -6.17492 -4.15196 0.35089 0.79147 2.64545 3.20736 3.27367 3.35965 3.38434 3.47476 3.60043 4.08188 4.32357 4.34186 4.59678 4.70386 4.88481 5.12795 5.19561 5.52789 5.64203 5.72533 5.75068 5.85210 5.99064 6.01072 6.28270 6.30000 6.42678 6.46635 6.58171 6.64177 6.69504 6.89992 7.11532 7.16569 7.38167 7.68010 7.79408 8.39577 8.47155 8.87928 9.45952 10.95598 Molecular weight = 281.12amu Principal moments of inertia in cm(-1) A = 0.029840 B = 0.004096 C = 0.003702 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 938.099151 B = 6834.074101 C = 7562.668037 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.143 4.143 2 C 0.028 3.972 3 C -0.148 4.148 4 C -0.514 4.514 5 H 0.077 0.923 6 C 0.076 3.924 7 N -0.890 5.890 8 Si 0.885 3.115 9 H -0.286 1.286 10 H -0.305 1.305 11 H -0.249 1.249 12 C 0.142 3.858 13 N -0.714 5.714 14 C 0.547 3.453 15 O -0.530 6.530 16 C -0.175 4.175 17 C -0.042 4.042 18 C -0.164 4.164 19 C 0.157 3.843 20 O -0.494 6.494 21 C -0.196 4.196 22 C 0.176 3.824 23 F -0.110 7.110 24 H 0.021 0.979 25 H 0.057 0.943 26 H 0.048 0.952 27 H 0.054 0.946 28 H 0.042 0.958 29 H 0.028 0.972 30 H 0.265 0.735 31 H 0.065 0.935 32 H 0.066 0.934 33 H 0.395 0.605 34 H 0.142 0.858 35 H 0.142 0.858 36 H 0.398 0.602 37 H 0.147 0.853 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.125 9.766 20.352 22.948 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.200 4.200 2 C 0.027 3.973 3 C -0.205 4.205 4 C -0.552 4.552 5 H 0.095 0.905 6 C -0.127 4.127 7 N -0.527 5.527 8 Si 0.718 3.282 9 H -0.213 1.213 10 H -0.233 1.233 11 H -0.175 1.175 12 C 0.020 3.980 13 N -0.365 5.365 14 C 0.333 3.667 15 O -0.408 6.408 16 C -0.179 4.179 17 C -0.061 4.061 18 C -0.183 4.183 19 C 0.112 3.888 20 O -0.305 6.305 21 C -0.215 4.215 22 C 0.155 3.845 23 F -0.088 7.088 24 H 0.040 0.960 25 H 0.076 0.924 26 H 0.067 0.933 27 H 0.073 0.927 28 H 0.061 0.939 29 H 0.047 0.953 30 H 0.075 0.925 31 H 0.083 0.917 32 H 0.085 0.915 33 H 0.231 0.769 34 H 0.160 0.840 35 H 0.160 0.840 36 H 0.255 0.745 37 H 0.165 0.835 Dipole moment (debyes) X Y Z Total from point charges -4.061 8.580 20.139 22.264 hybrid contribution -0.098 1.522 -0.229 1.543 sum -4.159 10.102 19.910 22.710 Atomic orbital electron populations 1.22307 0.97799 0.99929 0.99968 1.18734 0.92551 0.92276 0.93759 1.22372 1.01320 0.98280 0.98527 1.20705 1.34155 1.12389 0.87932 0.90472 1.24972 0.94655 0.97302 0.95771 1.69948 1.48070 1.35907 0.98742 0.87297 0.79332 0.85559 0.76029 1.21326 1.23348 1.17538 1.21583 0.98810 0.95944 0.81707 1.46216 1.52609 1.31826 1.05898 1.17881 0.81190 0.84462 0.83156 1.90843 1.37636 1.25688 1.86658 1.20321 1.04675 0.99595 0.93308 1.21143 0.93218 0.92219 0.99482 1.21401 1.03223 1.02424 0.91206 1.18289 0.92517 0.91724 0.86294 1.84758 1.49420 1.53530 1.42800 1.21349 1.02273 0.98957 0.98926 1.17427 0.90560 0.84195 0.92287 1.91622 1.71075 1.49635 1.96440 0.96047 0.92426 0.93281 0.92674 0.93947 0.95305 0.92512 0.91666 0.91550 0.76911 0.84013 0.84040 0.74451 0.83508 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.82 7.53 37.16 0.28 -2.54 16 2 C 0.03 0.60 0.50 -155.66 -0.08 0.52 16 3 C -0.15 -2.90 7.52 37.16 0.28 -2.62 16 4 C -0.51 -13.63 8.62 -34.44 -0.30 -13.93 16 5 H 0.08 2.26 7.99 -52.48 -0.42 1.84 16 6 C 0.08 2.08 5.32 -17.82 -0.09 1.98 16 7 N -0.89 -26.39 13.96 55.43 0.77 -25.61 16 8 Si 0.89 20.67 22.79 -169.99 -3.87 16.80 16 9 H -0.29 -6.65 7.10 56.52 0.40 -6.24 16 10 H -0.30 -7.31 7.11 56.52 0.40 -6.91 16 11 H -0.25 -5.24 4.65 56.52 0.26 -4.97 16 12 C 0.14 2.81 4.49 -4.04 -0.02 2.79 16 13 N -0.71 -11.62 4.95 -61.38 -0.30 -11.93 16 14 C 0.55 9.33 7.76 -12.51 -0.10 9.23 16 15 O -0.53 -11.15 15.33 5.28 0.08 -11.07 16 16 C -0.17 -2.34 5.88 -104.90 -0.62 -2.96 16 17 C -0.04 -0.41 9.53 -39.22 -0.37 -0.79 16 18 C -0.16 -1.35 9.96 -39.49 -0.39 -1.75 16 19 C 0.16 1.35 6.71 -39.04 -0.26 1.09 16 20 O -0.49 -3.35 13.48 -18.82 -0.25 -3.60 16 21 C -0.20 -1.94 9.95 -39.43 -0.39 -2.33 16 22 C 0.18 2.31 7.28 -38.99 -0.28 2.02 16 23 F -0.11 -1.72 15.54 2.25 0.03 -1.68 16 24 H 0.02 0.34 7.13 -51.93 -0.37 -0.03 16 25 H 0.06 1.22 4.30 -51.93 -0.22 0.99 16 26 H 0.05 0.97 8.12 -51.93 -0.42 0.55 16 27 H 0.05 1.08 8.14 -51.92 -0.42 0.66 16 28 H 0.04 0.88 2.25 -51.93 -0.12 0.76 16 29 H 0.03 0.45 6.86 -51.93 -0.36 0.10 16 30 H 0.26 7.40 8.31 -40.82 -0.34 7.06 16 31 H 0.06 1.36 8.14 -51.93 -0.42 0.94 16 32 H 0.07 1.41 8.14 -51.93 -0.42 0.98 16 33 H 0.39 5.37 4.28 -40.82 -0.17 5.20 16 34 H 0.14 1.15 6.39 -52.48 -0.34 0.81 16 35 H 0.14 0.84 8.06 -52.49 -0.42 0.42 16 36 H 0.40 0.68 9.06 45.56 0.41 1.09 16 37 H 0.15 1.19 8.06 -52.49 -0.42 0.76 16 LS Contribution 301.20 15.07 4.54 4.54 Total: -1.00 -33.09 301.20 -4.74 -37.83 By element: Atomic # 1 Polarization: 7.40 SS G_CDS: -3.39 Total: 4.01 kcal Atomic # 6 Polarization: -6.93 SS G_CDS: -2.35 Total: -9.28 kcal Atomic # 7 Polarization: -38.01 SS G_CDS: 0.47 Total: -37.54 kcal Atomic # 8 Polarization: -14.50 SS G_CDS: -0.17 Total: -14.67 kcal Atomic # 9 Polarization: -1.72 SS G_CDS: 0.03 Total: -1.68 kcal Atomic # 14 Polarization: 20.67 SS G_CDS: -3.87 Total: 16.80 kcal Total LS contribution 4.54 Total: 4.54 kcal Total: -33.09 -4.74 -37.83 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000316208959.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -45.068 kcal (2) G-P(sol) polarization free energy of solvation -33.086 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -78.154 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -4.744 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.830 kcal (6) G-S(sol) free energy of system = (1) + (5) -82.898 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.46 seconds