Wall clock time and date at job start Tue Mar 31 2020 06:09:33 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 C 1.53005 * 109.46800 * 2 1 4 4 C 1.50701 * 109.47145 * 240.00569 * 2 1 3 5 5 H 1.08009 * 119.99651 * 241.34574 * 4 2 1 6 6 C 1.37868 * 120.00338 * 61.34033 * 4 2 1 7 7 N 1.31521 * 120.00453 * 193.97821 * 6 4 2 8 8 Si 1.86801 * 120.00217 * 13.98060 * 6 4 2 9 9 H 1.48505 * 109.47124 * 84.54309 * 8 6 4 10 10 H 1.48497 * 109.47512 * 204.54782 * 8 6 4 11 11 H 1.48505 * 109.46983 * 324.55043 * 8 6 4 12 12 C 1.52998 * 109.47584 * 119.99837 * 2 1 3 13 13 N 1.46496 * 109.47329 * 300.00315 * 12 2 1 14 14 C 1.34773 * 120.00133 * 180.26769 * 13 12 2 15 15 O 1.21601 * 120.00124 * 359.73285 * 14 13 12 16 16 C 1.47452 * 120.00032 * 179.71990 * 14 13 12 17 17 C 1.39812 * 120.11023 * 359.73277 * 16 14 13 18 18 C 1.37610 * 119.93414 * 179.78301 * 17 16 14 19 19 C 1.39094 * 120.16145 * 0.46522 * 18 17 16 20 20 O 1.35707 * 119.88975 * 179.76106 * 19 18 17 21 21 C 1.38840 * 120.22072 * 359.78846 * 19 18 17 22 22 C 1.38054 * 120.06515 * 359.97417 * 21 19 18 23 23 F 1.35100 * 120.08301 * 179.97438 * 22 21 19 24 24 H 1.08998 * 109.47272 * 309.36723 * 1 2 3 25 25 H 1.08992 * 109.47141 * 69.36784 * 1 2 3 26 26 H 1.09004 * 109.46813 * 189.36595 * 1 2 3 27 27 H 1.09008 * 109.47129 * 180.02562 * 3 2 1 28 28 H 1.08998 * 109.47398 * 300.00135 * 3 2 1 29 29 H 1.08999 * 109.47102 * 60.00497 * 3 2 1 30 30 H 0.96991 * 120.00307 * 180.02562 * 7 6 4 31 31 H 1.08999 * 109.47488 * 180.02562 * 12 2 1 32 32 H 1.09007 * 109.46656 * 60.00290 * 12 2 1 33 33 H 0.97008 * 119.99791 * 359.97438 * 13 12 2 34 34 H 1.08004 * 120.03318 * 0.02562 * 17 16 14 35 35 H 1.08001 * 119.91929 * 180.20672 * 18 17 16 36 36 H 0.96699 * 114.00731 * 270.02056 * 20 19 18 37 37 H 1.08000 * 119.96454 * 179.97438 * 21 19 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4426 0.0000 4 6 2.0324 -0.7103 -1.2305 5 1 2.6353 -1.6010 -1.1316 6 6 1.7223 -0.2233 -2.4825 7 7 1.9157 -0.9724 -3.5461 8 14 1.0275 1.5007 -2.6684 9 1 2.1416 2.4818 -2.7083 10 1 0.2468 1.5866 -3.9287 11 1 0.1417 1.8043 -1.5158 12 6 2.0401 -0.7212 1.2492 13 7 1.5518 -0.0307 2.4454 14 6 1.8820 -0.4879 3.6694 15 8 2.5812 -1.4765 3.7810 16 6 1.3956 0.2107 4.8734 17 6 0.5963 1.3510 4.7478 18 6 0.1407 1.9976 5.8738 19 6 0.4812 1.5252 7.1370 20 8 0.0328 2.1700 8.2437 21 6 1.2789 0.3965 7.2693 22 6 1.7371 -0.2622 6.1459 23 9 2.5136 -1.3602 6.2743 24 1 -0.3634 0.6518 0.7945 25 1 -0.3633 0.3621 -0.9617 26 1 -0.3633 -1.0140 0.1672 27 1 3.1300 1.4426 -0.0005 28 1 1.6766 1.9564 -0.8899 29 1 1.6767 1.9563 0.8900 30 1 1.6979 -0.6297 -4.4269 31 1 3.1301 -0.7208 1.2494 32 1 1.6768 -1.7489 1.2492 33 1 0.9943 0.7582 2.3564 34 1 0.3336 1.7217 3.7680 35 1 -0.4794 2.8765 5.7765 36 1 0.6245 2.8663 8.5602 37 1 1.5411 0.0335 8.2521 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000316208959.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:09:33 Heat of formation + Delta-G solvation = -109.206966 kcal Electronic energy + Delta-G solvation = -21856.736191 eV Core-core repulsion = 18320.465924 eV Total energy + Delta-G solvation = -3536.270268 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 281.121 amu Computer time = 0.43 seconds Orbital eigenvalues (eV) -50.00515 -41.30563 -40.19683 -38.45230 -37.41239 -35.09423 -33.53708 -31.88554 -31.16598 -28.02808 -27.63108 -26.94426 -24.70525 -23.77747 -21.83120 -21.01196 -19.78079 -19.08881 -18.06221 -17.87539 -17.45660 -17.11395 -16.90447 -16.40814 -16.17955 -16.00955 -15.67458 -14.96391 -14.87518 -14.78999 -14.67798 -14.28588 -14.00663 -13.77801 -13.73815 -13.08576 -12.94559 -12.80341 -12.39138 -12.17467 -11.94721 -11.77810 -11.76607 -11.17106 -10.99721 -10.61603 -10.38518 -10.22188 -10.06882 -9.72439 -8.29403 -6.32025 -0.48384 0.04700 1.37621 1.39779 1.53250 1.66541 2.11664 2.36225 2.52254 2.84732 3.06642 3.30977 3.61740 3.64998 3.95351 4.06255 4.14443 4.30851 4.40144 4.54076 4.71745 4.79612 4.82847 4.86881 4.90481 4.94906 5.02531 5.05846 5.14855 5.16545 5.37728 5.50965 5.58057 5.71615 5.80119 6.29652 6.52149 6.72567 6.77028 7.17307 7.33012 8.88002 Molecular weight = 281.12amu Principal moments of inertia in cm(-1) A = 0.029840 B = 0.004096 C = 0.003702 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 938.099151 B = 6834.074101 C = 7562.668037 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.142 4.142 2 C 0.028 3.972 3 C -0.148 4.148 4 C -0.521 4.521 5 H 0.024 0.976 6 C 0.015 3.985 7 N -0.948 5.948 8 Si 0.947 3.053 9 H -0.281 1.281 10 H -0.316 1.316 11 H -0.198 1.198 12 C 0.156 3.844 13 N -0.699 5.699 14 C 0.546 3.454 15 O -0.583 6.583 16 C -0.200 4.200 17 C -0.031 4.031 18 C -0.151 4.151 19 C 0.177 3.823 20 O -0.496 6.496 21 C -0.195 4.195 22 C 0.148 3.852 23 F -0.137 7.137 24 H 0.070 0.930 25 H 0.047 0.953 26 H 0.039 0.961 27 H 0.046 0.954 28 H 0.037 0.963 29 H 0.078 0.922 30 H 0.265 0.735 31 H 0.043 0.957 32 H 0.040 0.960 33 H 0.412 0.588 34 H 0.167 0.833 35 H 0.177 0.823 36 H 0.424 0.576 37 H 0.161 0.839 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -6.714 14.161 23.039 27.864 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.200 4.200 2 C 0.027 3.973 3 C -0.205 4.205 4 C -0.559 4.559 5 H 0.043 0.957 6 C -0.182 4.182 7 N -0.587 5.587 8 Si 0.775 3.225 9 H -0.208 1.208 10 H -0.245 1.245 11 H -0.122 1.122 12 C 0.033 3.967 13 N -0.352 5.352 14 C 0.335 3.665 15 O -0.465 6.465 16 C -0.204 4.204 17 C -0.050 4.050 18 C -0.169 4.169 19 C 0.131 3.869 20 O -0.312 6.312 21 C -0.214 4.214 22 C 0.127 3.873 23 F -0.115 7.115 24 H 0.089 0.911 25 H 0.066 0.934 26 H 0.058 0.942 27 H 0.065 0.935 28 H 0.056 0.944 29 H 0.096 0.904 30 H 0.073 0.927 31 H 0.062 0.938 32 H 0.059 0.941 33 H 0.252 0.748 34 H 0.184 0.816 35 H 0.195 0.805 36 H 0.286 0.714 37 H 0.178 0.822 Dipole moment (debyes) X Y Z Total from point charges -6.664 13.029 22.885 27.164 hybrid contribution 0.731 0.104 -0.906 1.169 sum -5.933 13.133 21.979 26.282 Atomic orbital electron populations 1.22237 0.95808 1.00737 1.01176 1.18664 0.93984 0.93272 0.91426 1.22310 1.01065 0.96547 1.00564 1.21032 1.33059 1.11119 0.90704 0.95728 1.25915 0.95345 1.01907 0.95078 1.70123 1.50694 1.38447 0.99459 0.86309 0.79490 0.79514 0.77162 1.20787 1.24549 1.12161 1.21099 0.97489 0.95083 0.83067 1.45878 1.52696 1.32044 1.04592 1.18490 0.80056 0.83815 0.84178 1.90815 1.40044 1.28184 1.87414 1.20069 1.07450 1.01542 0.91308 1.21385 0.91712 0.90500 1.01390 1.21747 1.02316 1.02731 0.90123 1.18357 0.90519 0.90765 0.87252 1.84708 1.50086 1.54336 1.42044 1.21499 1.02248 0.99203 0.98463 1.17827 0.91590 0.84343 0.93495 1.91551 1.72127 1.51212 1.96607 0.91114 0.93383 0.94220 0.93525 0.94428 0.90364 0.92660 0.93811 0.94114 0.74826 0.81597 0.80548 0.71412 0.82179 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -5.19 7.53 71.98 0.54 -4.64 16 2 C 0.03 1.15 0.50 -52.93 -0.03 1.13 16 3 C -0.15 -5.28 7.52 71.98 0.54 -4.74 16 4 C -0.52 -28.72 8.62 25.60 0.22 -28.50 16 5 H 0.02 1.55 7.99 -2.91 -0.02 1.53 16 6 C 0.01 0.83 5.32 84.65 0.45 1.28 16 7 N -0.95 -58.84 13.96 21.44 0.30 -58.54 16 8 Si 0.95 41.63 22.79 68.60 1.56 43.20 16 9 H -0.28 -12.07 7.10 99.48 0.71 -11.37 16 10 H -0.32 -14.42 7.11 99.48 0.71 -13.72 16 11 H -0.20 -7.13 4.65 99.48 0.46 -6.67 16 12 C 0.16 6.30 4.49 86.38 0.39 6.68 16 13 N -0.70 -21.57 4.95 -466.36 -2.31 -23.88 16 14 C 0.55 18.48 7.76 86.67 0.67 19.16 16 15 O -0.58 -25.68 15.33 -4.03 -0.06 -25.74 16 16 C -0.20 -4.99 5.88 -20.04 -0.12 -5.11 16 17 C -0.03 -0.48 9.53 22.50 0.21 -0.26 16 18 C -0.15 -1.64 9.96 22.33 0.22 -1.41 16 19 C 0.18 2.22 6.71 22.62 0.15 2.38 16 20 O -0.50 -4.16 13.48 -90.27 -1.22 -5.37 16 21 C -0.19 -3.38 9.95 22.37 0.22 -3.16 16 22 C 0.15 3.77 7.28 22.65 0.16 3.94 16 23 F -0.14 -4.46 15.54 44.97 0.70 -3.76 16 24 H 0.07 1.88 7.13 -2.39 -0.02 1.86 16 25 H 0.05 1.85 4.30 -2.39 -0.01 1.84 16 26 H 0.04 1.50 8.12 -2.39 -0.02 1.48 16 27 H 0.05 1.73 8.14 -2.38 -0.02 1.71 16 28 H 0.04 1.39 2.25 -2.39 -0.01 1.39 16 29 H 0.08 2.01 6.86 -2.39 -0.02 2.00 16 30 H 0.26 15.44 8.31 -92.72 -0.77 14.67 16 31 H 0.04 1.93 8.14 -2.39 -0.02 1.91 16 32 H 0.04 1.82 8.14 -2.38 -0.02 1.81 16 33 H 0.41 9.39 4.28 -92.70 -0.40 8.99 16 34 H 0.17 1.64 6.39 -2.91 -0.02 1.62 16 35 H 0.18 0.78 8.06 -2.91 -0.02 0.76 16 36 H 0.42 -0.86 9.06 -74.06 -0.67 -1.53 16 37 H 0.16 2.23 8.06 -2.91 -0.02 2.21 16 Total: -1.00 -79.31 301.20 2.44 -76.87 By element: Atomic # 1 Polarization: 10.66 SS G_CDS: -0.18 Total: 10.49 kcal Atomic # 6 Polarization: -16.91 SS G_CDS: 3.65 Total: -13.26 kcal Atomic # 7 Polarization: -80.41 SS G_CDS: -2.01 Total: -82.42 kcal Atomic # 8 Polarization: -29.83 SS G_CDS: -1.28 Total: -31.11 kcal Atomic # 9 Polarization: -4.46 SS G_CDS: 0.70 Total: -3.76 kcal Atomic # 14 Polarization: 41.63 SS G_CDS: 1.56 Total: 43.20 kcal Total: -79.31 2.44 -76.87 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000316208959.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -32.335 kcal (2) G-P(sol) polarization free energy of solvation -79.313 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -111.648 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.441 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -76.872 kcal (6) G-S(sol) free energy of system = (1) + (5) -109.207 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.43 seconds