Wall clock time and date at job start Tue Mar 31 2020 06:09:42 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 C 1.52996 * 109.47172 * 2 1 4 4 C 1.50697 * 109.47090 * 240.00108 * 2 1 3 5 5 H 1.08007 * 120.00012 * 239.99315 * 4 2 1 6 6 C 1.37877 * 120.00282 * 59.99952 * 4 2 1 7 7 N 1.31510 * 119.99913 * 0.02562 * 6 4 2 8 8 Si 1.86804 * 120.00151 * 179.97438 * 6 4 2 9 9 H 1.48492 * 109.47248 * 0.02562 * 8 6 4 10 10 H 1.48501 * 109.47019 * 120.00285 * 8 6 4 11 11 H 1.48497 * 109.47124 * 239.99900 * 8 6 4 12 12 C 1.52995 * 109.47313 * 120.00009 * 2 1 3 13 13 N 1.46497 * 109.47095 * 300.00287 * 12 2 1 14 14 C 1.34775 * 120.00265 * 180.02562 * 13 12 2 15 15 O 1.21599 * 120.00042 * 359.97438 * 14 13 12 16 16 C 1.47540 * 120.00346 * 179.97438 * 14 13 12 17 17 C 1.39716 * 120.17874 * 0.02562 * 16 14 13 18 18 C 1.37983 * 119.88289 * 179.97438 * 17 16 14 19 19 F 1.35105 * 119.87625 * 179.97438 * 18 17 16 20 20 C 1.38729 * 120.24828 * 0.02562 * 18 17 16 21 21 C 1.38055 * 120.36342 * 359.67663 * 20 18 17 22 22 C 1.38683 * 120.11312 * 0.60102 * 21 20 18 23 23 O 1.35695 * 120.12675 * 179.69885 * 22 21 20 24 24 H 1.08993 * 109.47149 * 300.00017 * 1 2 3 25 25 H 1.09000 * 109.47039 * 60.00459 * 1 2 3 26 26 H 1.08999 * 109.46979 * 179.97438 * 1 2 3 27 27 H 1.08995 * 109.47612 * 180.02562 * 3 2 1 28 28 H 1.09000 * 109.47132 * 300.00392 * 3 2 1 29 29 H 1.09006 * 109.47195 * 59.99766 * 3 2 1 30 30 H 0.96999 * 120.00139 * 180.02562 * 7 6 4 31 31 H 1.09001 * 109.47219 * 179.97438 * 12 2 1 32 32 H 1.08999 * 109.47274 * 59.99915 * 12 2 1 33 33 H 0.97005 * 119.99985 * 359.97438 * 13 12 2 34 34 H 1.08004 * 120.05888 * 359.96265 * 17 16 14 35 35 H 1.07998 * 119.81763 * 179.97438 * 20 18 17 36 36 H 1.08002 * 119.94280 * 180.29629 * 21 20 18 37 37 H 0.96696 * 114.00125 * 269.72392 * 23 22 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 2.0323 -0.7104 -1.2304 5 1 2.6533 -1.5885 -1.1314 6 6 1.6992 -0.2393 -2.4827 7 7 0.9436 0.8302 -2.6034 8 14 2.3225 -1.1195 -4.0080 9 1 3.1474 -2.2863 -3.6039 10 1 1.1678 -1.5865 -4.8166 11 1 3.1472 -0.1857 -4.8161 12 6 2.0400 -0.7212 1.2492 13 7 1.5517 -0.0307 2.4453 14 6 1.8777 -0.4908 3.6694 15 8 2.5768 -1.4794 3.7811 16 6 1.3863 0.2050 4.8741 17 6 0.5823 1.3409 4.7503 18 6 0.1257 1.9866 5.8811 19 9 -0.6513 3.0853 5.7612 20 6 0.4624 1.5124 7.1406 21 6 1.2511 0.3873 7.2748 22 6 1.7231 -0.2700 6.1485 23 8 2.5034 -1.3723 6.2801 24 1 -0.3633 0.5138 0.8899 25 1 -0.3633 0.5138 -0.8900 26 1 -0.3633 -1.0277 -0.0005 27 1 3.1299 1.4425 -0.0005 28 1 1.6766 1.9563 -0.8899 29 1 1.6766 1.9563 0.8900 30 1 0.7089 1.1614 -3.4844 31 1 3.1300 -0.7216 1.2489 32 1 1.6767 -1.7489 1.2492 33 1 0.9942 0.7582 2.3563 34 1 0.3189 1.7131 3.7713 35 1 0.1015 2.0234 8.0209 36 1 1.5051 0.0212 8.2586 37 1 3.4505 -1.1815 6.3180 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000316339630.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:09:42 Heat of formation + Delta-G solvation = -103.124394 kcal Electronic energy + Delta-G solvation = -21868.889494 eV Core-core repulsion = 18332.882987 eV Total energy + Delta-G solvation = -3536.006508 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 281.121 amu Computer time = 0.38 seconds Orbital eigenvalues (eV) -49.08106 -40.38045 -38.49601 -36.66722 -36.27903 -33.41724 -31.82115 -30.58264 -29.49747 -25.87915 -25.76156 -25.18633 -23.86422 -22.59208 -20.48241 -19.02763 -18.49982 -18.08252 -16.98721 -16.23109 -15.95479 -15.72216 -15.51325 -14.94585 -14.73867 -14.61012 -14.36908 -13.86653 -13.37738 -13.12495 -12.89551 -12.77653 -12.21995 -12.04502 -11.96493 -11.41699 -11.23237 -10.90610 -10.90146 -10.67954 -10.42327 -10.22112 -9.67219 -9.63436 -9.45084 -9.29659 -8.81249 -8.75502 -8.48296 -8.34404 -6.04242 -4.14378 0.49823 0.80772 2.78451 3.26234 3.34932 3.38913 3.52936 3.62000 3.96453 4.01167 4.38063 4.42977 4.53302 4.92606 5.04738 5.22766 5.39820 5.54348 5.65716 5.76145 5.96559 6.20218 6.28510 6.40311 6.47515 6.72347 6.78280 6.89309 6.95225 6.98318 7.31755 7.52346 7.55677 7.67254 7.95562 7.97815 8.11528 8.35320 8.58593 8.86431 9.51717 10.97288 Molecular weight = 281.12amu Principal moments of inertia in cm(-1) A = 0.027282 B = 0.004069 C = 0.003630 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1026.064501 B = 6879.469287 C = 7711.919546 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.132 4.132 2 C 0.055 3.945 3 C -0.131 4.131 4 C -0.505 4.505 5 H 0.059 0.941 6 C 0.066 3.934 7 N -0.886 5.886 8 Si 0.893 3.107 9 H -0.273 1.273 10 H -0.284 1.284 11 H -0.284 1.284 12 C 0.132 3.868 13 N -0.710 5.710 14 C 0.546 3.454 15 O -0.528 6.528 16 C -0.128 4.128 17 C -0.107 4.107 18 C 0.082 3.918 19 F -0.136 7.136 20 C -0.118 4.118 21 C -0.129 4.129 22 C 0.156 3.844 23 O -0.473 6.473 24 H 0.005 0.995 25 H 0.086 0.914 26 H 0.028 0.972 27 H 0.027 0.973 28 H 0.086 0.914 29 H 0.005 0.995 30 H 0.259 0.741 31 H 0.057 0.943 32 H 0.057 0.943 33 H 0.396 0.604 34 H 0.145 0.855 35 H 0.143 0.857 36 H 0.144 0.856 37 H 0.396 0.604 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.597 3.775 17.569 17.980 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.189 4.189 2 C 0.054 3.946 3 C -0.189 4.189 4 C -0.544 4.544 5 H 0.077 0.923 6 C -0.135 4.135 7 N -0.524 5.524 8 Si 0.721 3.279 9 H -0.197 1.197 10 H -0.211 1.211 11 H -0.211 1.211 12 C 0.010 3.990 13 N -0.361 5.361 14 C 0.331 3.669 15 O -0.406 6.406 16 C -0.132 4.132 17 C -0.127 4.127 18 C 0.063 3.937 19 F -0.114 7.114 20 C -0.137 4.137 21 C -0.147 4.147 22 C 0.109 3.891 23 O -0.284 6.284 24 H 0.024 0.976 25 H 0.105 0.895 26 H 0.047 0.953 27 H 0.047 0.953 28 H 0.105 0.895 29 H 0.024 0.976 30 H 0.070 0.930 31 H 0.076 0.924 32 H 0.076 0.924 33 H 0.233 0.767 34 H 0.162 0.838 35 H 0.160 0.840 36 H 0.162 0.838 37 H 0.254 0.746 Dipole moment (debyes) X Y Z Total from point charges -0.715 2.901 17.436 17.690 hybrid contribution 0.249 0.446 -0.943 1.073 sum -0.466 3.347 16.493 16.835 Atomic orbital electron populations 1.21840 0.97720 0.99293 1.00073 1.18379 0.92846 0.92793 0.90587 1.21839 0.98652 0.98319 1.00079 1.21009 1.31468 1.12114 0.89803 0.92322 1.24881 0.94836 0.94911 0.98881 1.69808 1.36699 1.22752 1.23162 0.86509 0.78653 0.79746 0.82949 1.19739 1.21053 1.21057 1.21776 0.98264 0.95904 0.83076 1.46291 1.52288 1.31655 1.05896 1.17918 0.81456 0.84461 0.83062 1.90791 1.37838 1.25423 1.86597 1.20503 1.01496 0.96438 0.94752 1.21321 0.97441 0.94965 0.98965 1.17484 0.95663 0.86466 0.94082 1.91532 1.72295 1.50748 1.96845 1.21157 0.98986 0.97164 0.96398 1.21280 0.99533 0.94821 0.99079 1.18492 0.94014 0.86373 0.90254 1.84770 1.21237 1.27295 1.95091 0.97621 0.89502 0.95318 0.95344 0.89499 0.97633 0.93034 0.92439 0.92421 0.76722 0.83752 0.83969 0.83778 0.74563 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -2.95 8.08 37.16 0.30 -2.65 16 2 C 0.05 1.25 0.50 -155.67 -0.08 1.17 16 3 C -0.13 -2.92 8.08 37.16 0.30 -2.62 16 4 C -0.51 -13.11 8.01 -34.44 -0.28 -13.38 16 5 H 0.06 1.54 7.74 -52.48 -0.41 1.13 16 6 C 0.07 1.72 5.15 -17.82 -0.09 1.63 16 7 N -0.89 -23.41 9.35 55.43 0.52 -22.89 16 8 Si 0.89 20.58 29.54 -169.99 -5.02 15.56 16 9 H -0.27 -6.29 7.11 56.52 0.40 -5.88 16 10 H -0.28 -6.56 7.11 56.52 0.40 -6.16 16 11 H -0.28 -6.55 7.11 56.52 0.40 -6.15 16 12 C 0.13 2.77 4.50 -4.05 -0.02 2.76 16 13 N -0.71 -12.66 4.91 -61.35 -0.30 -12.97 16 14 C 0.55 9.59 7.76 -12.47 -0.10 9.50 16 15 O -0.53 -10.83 15.16 -16.62 -0.25 -11.08 16 16 C -0.13 -1.80 5.88 -104.85 -0.62 -2.41 16 17 C -0.11 -1.31 9.51 -39.12 -0.37 -1.69 16 18 C 0.08 0.91 7.28 -39.49 -0.29 0.62 16 19 F -0.14 -1.57 17.26 2.25 0.04 -1.53 16 20 C -0.12 -1.06 10.01 -39.47 -0.39 -1.45 16 21 C -0.13 -1.19 9.97 -39.48 -0.39 -1.58 16 22 C 0.16 1.92 6.72 -38.72 -0.26 1.66 16 23 O -0.47 -6.03 11.57 -40.68 -0.47 -6.50 16 24 H 0.00 0.10 6.86 -51.93 -0.36 -0.26 16 25 H 0.09 2.15 6.07 -51.93 -0.32 1.84 16 26 H 0.03 0.64 8.14 -51.93 -0.42 0.21 16 27 H 0.03 0.62 8.14 -51.93 -0.42 0.20 16 28 H 0.09 2.14 6.07 -51.93 -0.32 1.83 16 29 H 0.00 0.09 6.86 -51.93 -0.36 -0.26 16 30 H 0.26 6.62 8.31 -40.82 -0.34 6.28 16 31 H 0.06 1.25 8.14 -51.93 -0.42 0.83 16 32 H 0.06 1.28 8.14 -51.93 -0.42 0.86 16 33 H 0.40 6.41 4.19 -40.82 -0.17 6.23 16 34 H 0.14 1.66 6.40 -52.48 -0.34 1.33 16 35 H 0.14 0.89 8.06 -52.49 -0.42 0.47 16 36 H 0.14 0.95 8.06 -52.49 -0.42 0.53 16 37 H 0.40 3.48 9.06 45.56 0.41 3.89 16 LS Contribution 310.83 15.07 4.68 4.68 Total: -1.00 -29.65 310.83 -6.61 -36.25 By element: Atomic # 1 Polarization: 10.43 SS G_CDS: -3.52 Total: 6.91 kcal Atomic # 6 Polarization: -6.16 SS G_CDS: -2.29 Total: -8.44 kcal Atomic # 7 Polarization: -36.07 SS G_CDS: 0.22 Total: -35.85 kcal Atomic # 8 Polarization: -16.86 SS G_CDS: -0.72 Total: -17.58 kcal Atomic # 9 Polarization: -1.57 SS G_CDS: 0.04 Total: -1.53 kcal Atomic # 14 Polarization: 20.58 SS G_CDS: -5.02 Total: 15.56 kcal Total LS contribution 4.68 Total: 4.68 kcal Total: -29.65 -6.61 -36.25 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000316339630.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -66.871 kcal (2) G-P(sol) polarization free energy of solvation -29.648 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -96.519 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.605 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.253 kcal (6) G-S(sol) free energy of system = (1) + (5) -103.124 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.38 seconds