Wall clock time and date at job start Tue Mar 31 2020 06:09:41 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 C 1.52996 * 109.47172 * 2 1 4 4 C 1.50697 * 109.47090 * 240.00108 * 2 1 3 5 5 H 1.08007 * 120.00012 * 239.99315 * 4 2 1 6 6 C 1.37877 * 120.00282 * 59.99952 * 4 2 1 7 7 N 1.31510 * 119.99913 * 0.02562 * 6 4 2 8 8 Si 1.86804 * 120.00151 * 179.97438 * 6 4 2 9 9 H 1.48492 * 109.47248 * 0.02562 * 8 6 4 10 10 H 1.48501 * 109.47019 * 120.00285 * 8 6 4 11 11 H 1.48497 * 109.47124 * 239.99900 * 8 6 4 12 12 C 1.52995 * 109.47313 * 120.00009 * 2 1 3 13 13 N 1.46497 * 109.47095 * 300.00287 * 12 2 1 14 14 C 1.34775 * 120.00265 * 180.02562 * 13 12 2 15 15 O 1.21599 * 120.00042 * 359.97438 * 14 13 12 16 16 C 1.47540 * 120.00346 * 179.97438 * 14 13 12 17 17 C 1.39716 * 120.17874 * 0.02562 * 16 14 13 18 18 C 1.37983 * 119.88289 * 179.97438 * 17 16 14 19 19 F 1.35105 * 119.87625 * 179.97438 * 18 17 16 20 20 C 1.38729 * 120.24828 * 0.02562 * 18 17 16 21 21 C 1.38055 * 120.36342 * 359.67663 * 20 18 17 22 22 C 1.38683 * 120.11312 * 0.60102 * 21 20 18 23 23 O 1.35695 * 120.12675 * 179.69885 * 22 21 20 24 24 H 1.08993 * 109.47149 * 300.00017 * 1 2 3 25 25 H 1.09000 * 109.47039 * 60.00459 * 1 2 3 26 26 H 1.08999 * 109.46979 * 179.97438 * 1 2 3 27 27 H 1.08995 * 109.47612 * 180.02562 * 3 2 1 28 28 H 1.09000 * 109.47132 * 300.00392 * 3 2 1 29 29 H 1.09006 * 109.47195 * 59.99766 * 3 2 1 30 30 H 0.96999 * 120.00139 * 180.02562 * 7 6 4 31 31 H 1.09001 * 109.47219 * 179.97438 * 12 2 1 32 32 H 1.08999 * 109.47274 * 59.99915 * 12 2 1 33 33 H 0.97005 * 119.99985 * 359.97438 * 13 12 2 34 34 H 1.08004 * 120.05888 * 359.96265 * 17 16 14 35 35 H 1.07998 * 119.81763 * 179.97438 * 20 18 17 36 36 H 1.08002 * 119.94280 * 180.29629 * 21 20 18 37 37 H 0.96696 * 114.00125 * 269.72392 * 23 22 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 2.0323 -0.7104 -1.2304 5 1 2.6533 -1.5885 -1.1314 6 6 1.6992 -0.2393 -2.4827 7 7 0.9436 0.8302 -2.6034 8 14 2.3225 -1.1195 -4.0080 9 1 3.1474 -2.2863 -3.6039 10 1 1.1678 -1.5865 -4.8166 11 1 3.1472 -0.1857 -4.8161 12 6 2.0400 -0.7212 1.2492 13 7 1.5517 -0.0307 2.4453 14 6 1.8777 -0.4908 3.6694 15 8 2.5768 -1.4794 3.7811 16 6 1.3863 0.2050 4.8741 17 6 0.5823 1.3409 4.7503 18 6 0.1257 1.9866 5.8811 19 9 -0.6513 3.0853 5.7612 20 6 0.4624 1.5124 7.1406 21 6 1.2511 0.3873 7.2748 22 6 1.7231 -0.2700 6.1485 23 8 2.5034 -1.3723 6.2801 24 1 -0.3633 0.5138 0.8899 25 1 -0.3633 0.5138 -0.8900 26 1 -0.3633 -1.0277 -0.0005 27 1 3.1299 1.4425 -0.0005 28 1 1.6766 1.9563 -0.8899 29 1 1.6766 1.9563 0.8900 30 1 0.7089 1.1614 -3.4844 31 1 3.1300 -0.7216 1.2489 32 1 1.6767 -1.7489 1.2492 33 1 0.9942 0.7582 2.3563 34 1 0.3189 1.7131 3.7713 35 1 0.1015 2.0234 8.0209 36 1 1.5051 0.0212 8.2586 37 1 3.4505 -1.1815 6.3180 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000316339630.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:09:41 Heat of formation + Delta-G solvation = -121.448050 kcal Electronic energy + Delta-G solvation = -21869.684068 eV Core-core repulsion = 18332.882987 eV Total energy + Delta-G solvation = -3536.801081 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 281.121 amu Computer time = 0.45 seconds Orbital eigenvalues (eV) -49.93502 -41.50092 -39.75304 -38.04815 -37.52051 -35.05864 -33.18311 -32.04351 -30.38862 -27.59596 -27.56642 -26.97647 -24.97404 -23.53114 -21.78399 -20.67950 -19.63127 -19.15559 -18.02436 -17.78851 -17.16553 -16.87737 -16.51645 -16.41322 -16.29813 -16.10330 -15.38125 -14.87649 -14.73610 -14.55190 -14.54283 -14.00247 -13.89251 -13.23970 -13.12026 -12.90854 -12.84289 -12.69477 -12.57902 -12.27832 -12.15050 -11.87470 -11.51401 -11.30056 -10.85426 -10.69762 -10.41962 -10.34174 -9.97763 -9.58399 -8.03222 -6.19025 -0.42596 -0.02442 1.41400 1.45685 1.55004 1.72921 2.18139 2.47416 2.52799 3.08982 3.15905 3.20661 3.58332 3.64574 4.03470 4.15157 4.38096 4.48571 4.52673 4.68867 4.74417 4.83966 4.95812 4.99077 5.01877 5.07086 5.16346 5.17611 5.31511 5.52953 5.61699 5.64290 5.66558 6.12066 6.18847 6.41573 6.56490 6.77809 6.84987 7.19858 7.48917 8.96057 Molecular weight = 281.12amu Principal moments of inertia in cm(-1) A = 0.027282 B = 0.004069 C = 0.003630 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1026.064501 B = 6879.469287 C = 7711.919546 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.122 4.122 2 C 0.050 3.950 3 C -0.121 4.121 4 C -0.527 4.527 5 H 0.046 0.954 6 C 0.028 3.972 7 N -0.899 5.899 8 Si 0.946 3.054 9 H -0.275 1.275 10 H -0.282 1.282 11 H -0.281 1.281 12 C 0.148 3.852 13 N -0.707 5.707 14 C 0.546 3.454 15 O -0.565 6.565 16 C -0.154 4.154 17 C -0.110 4.110 18 C 0.074 3.926 19 F -0.139 7.139 20 C -0.095 4.095 21 C -0.115 4.115 22 C 0.149 3.851 23 O -0.491 6.491 24 H 0.034 0.966 25 H 0.064 0.936 26 H 0.018 0.982 27 H 0.020 0.980 28 H 0.063 0.937 29 H 0.034 0.966 30 H 0.260 0.740 31 H 0.044 0.956 32 H 0.040 0.960 33 H 0.405 0.595 34 H 0.145 0.855 35 H 0.179 0.821 36 H 0.178 0.822 37 H 0.410 0.590 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.093 4.662 19.806 20.376 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.180 4.180 2 C 0.049 3.951 3 C -0.179 4.179 4 C -0.566 4.566 5 H 0.064 0.936 6 C -0.171 4.171 7 N -0.538 5.538 8 Si 0.773 3.227 9 H -0.200 1.200 10 H -0.208 1.208 11 H -0.207 1.207 12 C 0.025 3.975 13 N -0.359 5.359 14 C 0.334 3.666 15 O -0.445 6.445 16 C -0.158 4.158 17 C -0.129 4.129 18 C 0.055 3.945 19 F -0.117 7.117 20 C -0.114 4.114 21 C -0.133 4.133 22 C 0.103 3.897 23 O -0.304 6.304 24 H 0.052 0.948 25 H 0.083 0.917 26 H 0.038 0.962 27 H 0.040 0.960 28 H 0.082 0.918 29 H 0.053 0.947 30 H 0.070 0.930 31 H 0.062 0.938 32 H 0.058 0.942 33 H 0.243 0.757 34 H 0.163 0.837 35 H 0.196 0.804 36 H 0.196 0.804 37 H 0.270 0.730 Dipole moment (debyes) X Y Z Total from point charges -1.217 3.812 19.684 20.086 hybrid contribution 0.396 0.190 -1.539 1.600 sum -0.821 4.002 18.145 18.599 Atomic orbital electron populations 1.21686 0.97238 0.98728 1.00316 1.18378 0.93190 0.93127 0.90390 1.21677 0.98101 0.97774 1.00330 1.21281 1.31699 1.12167 0.91443 0.93606 1.25454 0.95113 0.95576 1.00993 1.69910 1.37025 1.23304 1.23572 0.85690 0.78113 0.78730 0.80172 1.19956 1.20790 1.20687 1.21323 0.97297 0.95084 0.83819 1.46103 1.52623 1.31838 1.05318 1.18454 0.80462 0.83984 0.83731 1.90761 1.39494 1.27119 1.87162 1.20209 1.04043 0.97852 0.93704 1.21298 0.97303 0.94527 0.99800 1.17603 0.95895 0.86476 0.94555 1.91530 1.72411 1.50892 1.96908 1.21569 0.96862 0.96291 0.96674 1.21562 0.98290 0.94109 0.99361 1.18782 0.94035 0.86348 0.90572 1.84720 1.22516 1.28117 1.95094 0.94759 0.91739 0.96231 0.96037 0.91787 0.94704 0.93019 0.93773 0.94162 0.75668 0.83690 0.80357 0.80420 0.72961 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -5.48 8.08 71.98 0.58 -4.89 16 2 C 0.05 2.31 0.50 -52.93 -0.03 2.29 16 3 C -0.12 -5.37 8.08 71.98 0.58 -4.79 16 4 C -0.53 -27.90 8.01 25.60 0.21 -27.69 16 5 H 0.05 2.48 7.74 -2.91 -0.02 2.45 16 6 C 0.03 1.49 5.15 84.66 0.44 1.93 16 7 N -0.90 -47.91 9.35 21.45 0.20 -47.71 16 8 Si 0.95 42.59 29.54 68.60 2.03 44.61 16 9 H -0.27 -12.35 7.11 99.48 0.71 -11.65 16 10 H -0.28 -12.52 7.11 99.48 0.71 -11.81 16 11 H -0.28 -12.43 7.11 99.48 0.71 -11.72 16 12 C 0.15 6.37 4.50 86.38 0.39 6.76 16 13 N -0.71 -25.20 4.91 -466.27 -2.29 -27.49 16 14 C 0.55 19.24 7.76 86.70 0.67 19.92 16 15 O -0.56 -23.59 15.16 16.91 0.26 -23.33 16 16 C -0.15 -4.16 5.88 -20.01 -0.12 -4.28 16 17 C -0.11 -2.51 9.51 22.57 0.21 -2.29 16 18 C 0.07 1.42 7.28 22.33 0.16 1.58 16 19 F -0.14 -2.83 17.26 44.97 0.78 -2.06 16 20 C -0.10 -1.29 10.01 22.34 0.22 -1.07 16 21 C -0.12 -1.67 9.97 22.33 0.22 -1.45 16 22 C 0.15 3.39 6.72 22.83 0.15 3.55 16 23 O -0.49 -11.97 11.57 -69.20 -0.80 -12.77 16 24 H 0.03 1.29 6.86 -2.39 -0.02 1.28 16 25 H 0.06 3.21 6.07 -2.39 -0.01 3.19 16 26 H 0.02 0.86 8.14 -2.39 -0.02 0.84 16 27 H 0.02 0.93 8.14 -2.39 -0.02 0.91 16 28 H 0.06 3.16 6.07 -2.39 -0.01 3.15 16 29 H 0.03 1.29 6.86 -2.38 -0.02 1.28 16 30 H 0.26 13.32 8.31 -92.71 -0.77 12.55 16 31 H 0.04 1.99 8.14 -2.39 -0.02 1.97 16 32 H 0.04 1.85 8.14 -2.39 -0.02 1.83 16 33 H 0.41 12.77 4.19 -92.70 -0.39 12.38 16 34 H 0.15 3.15 6.40 -2.91 -0.02 3.14 16 35 H 0.18 1.18 8.06 -2.91 -0.02 1.16 16 36 H 0.18 1.42 8.06 -2.91 -0.02 1.40 16 37 H 0.41 6.87 9.06 -74.06 -0.67 6.19 16 Total: -1.00 -64.57 310.83 3.93 -60.64 By element: Atomic # 1 Polarization: 18.49 SS G_CDS: 0.06 Total: 18.55 kcal Atomic # 6 Polarization: -14.15 SS G_CDS: 3.70 Total: -10.45 kcal Atomic # 7 Polarization: -73.10 SS G_CDS: -2.09 Total: -75.19 kcal Atomic # 8 Polarization: -35.55 SS G_CDS: -0.54 Total: -36.10 kcal Atomic # 9 Polarization: -2.83 SS G_CDS: 0.78 Total: -2.06 kcal Atomic # 14 Polarization: 42.59 SS G_CDS: 2.03 Total: 44.61 kcal Total: -64.57 3.93 -60.64 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000316339630.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -60.812 kcal (2) G-P(sol) polarization free energy of solvation -64.567 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -125.379 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.931 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -60.636 kcal (6) G-S(sol) free energy of system = (1) + (5) -121.448 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.45 seconds