Wall clock time and date at job start Tue Mar 31 2020 05:18:47 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42896 * 1 3 3 C 1.42901 * 113.99975 * 2 1 4 4 C 1.52998 * 109.47002 * 180.02562 * 3 2 1 5 5 N 1.46505 * 109.47514 * 64.99724 * 4 3 2 6 6 C 1.36889 * 120.00383 * 264.59201 * 5 4 3 7 7 H 1.08000 * 120.00221 * 141.12516 * 6 5 4 8 8 C 1.39042 * 119.99555 * 321.12834 * 6 5 4 9 9 N 1.31369 * 120.00176 * 340.44470 * 8 6 5 10 10 Si 1.86799 * 119.99693 * 160.44581 * 8 6 5 11 11 H 1.48504 * 109.47212 * 59.99653 * 10 8 6 12 12 H 1.48495 * 109.46987 * 179.97438 * 10 8 6 13 13 H 1.48505 * 109.47314 * 299.99819 * 10 8 6 14 14 C 1.34779 * 119.99475 * 84.58646 * 5 4 3 15 15 O 1.21604 * 120.00231 * 5.11984 * 14 5 4 16 16 C 1.47581 * 119.99666 * 185.11954 * 14 5 4 17 17 C 1.39724 * 120.17341 * 317.68020 * 16 14 5 18 18 C 1.37841 * 119.87319 * 179.72229 * 17 16 14 19 19 C 1.50690 * 119.89045 * 180.29606 * 18 17 16 20 20 C 1.38476 * 120.22013 * 0.55041 * 18 17 16 21 21 C 1.38227 * 120.35412 * 359.72334 * 20 18 17 22 22 C 1.38296 * 120.12081 * 359.97438 * 21 20 18 23 23 F 1.35095 * 120.11550 * 179.97438 * 22 21 20 24 24 H 1.09000 * 109.47319 * 299.99994 * 1 2 3 25 25 H 1.09005 * 109.47484 * 59.99847 * 1 2 3 26 26 H 1.08998 * 109.47423 * 180.02562 * 1 2 3 27 27 H 1.08996 * 109.46829 * 60.00548 * 3 2 1 28 28 H 1.08994 * 109.46965 * 299.99897 * 3 2 1 29 29 H 1.09006 * 109.46942 * 305.00501 * 4 3 2 30 30 H 1.08994 * 109.47485 * 185.00348 * 4 3 2 31 31 H 0.96995 * 120.00180 * 180.02562 * 9 8 6 32 32 H 1.07999 * 120.06168 * 359.97111 * 17 16 14 33 33 H 1.09006 * 109.47056 * 270.25463 * 19 18 17 34 34 H 1.09001 * 109.47386 * 30.25515 * 19 18 17 35 35 H 1.08995 * 109.47564 * 150.25614 * 19 18 17 36 36 H 1.08003 * 119.82338 * 179.69556 * 20 18 17 37 37 H 1.07999 * 119.94200 * 179.97438 * 21 20 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0102 1.3055 0.0000 4 6 3.5354 1.1846 -0.0006 5 7 3.9757 0.5643 -1.2527 6 6 4.2034 -0.7845 -1.3054 7 1 3.9162 -1.3468 -2.1815 8 6 4.8044 -1.4304 -0.2307 9 7 5.4926 -0.7396 0.6496 10 14 4.6332 -3.2806 -0.0388 11 1 5.2063 -3.9570 -1.2302 12 1 5.3612 -3.7215 1.1781 13 1 3.1965 -3.6344 0.0878 14 6 4.1564 1.3217 -2.3528 15 8 4.0448 2.5307 -2.2838 16 6 4.4898 0.6838 -3.6412 17 6 5.4186 -0.3589 -3.6890 18 6 5.7212 -0.9541 -4.8949 19 6 6.7178 -2.0831 -4.9460 20 6 5.1162 -0.5144 -6.0604 21 6 4.2002 0.5202 -6.0246 22 6 3.8814 1.1235 -4.8217 23 9 2.9866 2.1350 -4.7869 24 1 -0.3634 0.5138 0.8900 25 1 -0.3634 0.5139 -0.8900 26 1 -0.3634 -1.0276 0.0005 27 1 1.6886 1.8463 0.8900 28 1 1.6886 1.8463 -0.8900 29 1 3.8514 0.5681 0.8409 30 1 3.9785 2.1764 0.0890 31 1 5.9121 -1.1903 1.3990 32 1 5.8956 -0.7005 -2.7823 33 1 7.7184 -1.6780 -5.0974 34 1 6.6882 -2.6367 -4.0075 35 1 6.4680 -2.7514 -5.7700 36 1 5.3616 -0.9822 -7.0024 37 1 3.7327 0.8580 -6.9376 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000317113622.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:18:47 Heat of formation + Delta-G solvation = -94.603410 kcal Electronic energy + Delta-G solvation = -22839.501399 eV Core-core repulsion = 19303.864389 eV Total energy + Delta-G solvation = -3535.637010 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 281.121 amu Computer time = 0.44 seconds Orbital eigenvalues (eV) -48.22872 -39.28362 -37.89200 -36.84451 -34.75495 -31.97457 -31.65369 -31.07526 -28.85939 -26.18837 -25.82874 -24.93636 -23.38467 -22.10035 -20.84626 -19.13874 -17.59264 -16.60209 -16.30723 -15.88133 -15.47813 -15.26497 -14.96171 -14.66184 -14.36558 -14.06490 -13.92421 -13.44779 -13.35337 -13.15993 -12.78150 -12.75108 -12.01361 -11.69149 -11.63617 -11.42883 -11.24400 -11.20767 -11.06089 -10.99365 -10.73580 -10.56273 -10.40110 -10.09440 -9.18019 -8.98512 -8.61245 -8.36596 -7.99313 -7.52482 -6.39634 -4.04753 1.48034 1.72981 3.14052 3.22567 3.28189 3.69128 4.09982 4.25452 4.47854 4.64883 4.83918 5.02133 5.13694 5.30421 5.52237 5.58456 5.66452 5.72874 5.83889 5.89962 5.97015 5.99962 6.05920 6.12878 6.22173 6.29830 6.45469 6.53036 6.58896 6.71861 6.94931 6.99877 7.21533 7.38699 7.45232 7.77917 7.95652 8.34067 9.04484 9.42806 9.86051 10.63361 Molecular weight = 281.12amu Principal moments of inertia in cm(-1) A = 0.013147 B = 0.008720 C = 0.006248 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2129.232515 B = 3210.195098 C = 4480.651232 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.031 3.969 2 O -0.365 6.365 3 C 0.051 3.949 4 C 0.117 3.883 5 N -0.416 5.416 6 C -0.327 4.327 7 H 0.089 0.911 8 C 0.050 3.950 9 N -0.860 5.860 10 Si 0.912 3.088 11 H -0.272 1.272 12 H -0.285 1.285 13 H -0.270 1.270 14 C 0.505 3.495 15 O -0.596 6.596 16 C -0.119 4.119 17 C -0.034 4.034 18 C -0.120 4.120 19 C -0.108 4.108 20 C -0.089 4.089 21 C -0.172 4.172 22 C 0.122 3.878 23 F -0.133 7.133 24 H 0.030 0.970 25 H 0.032 0.968 26 H 0.077 0.923 27 H 0.041 0.959 28 H 0.041 0.959 29 H 0.113 0.887 30 H 0.073 0.927 31 H 0.271 0.729 32 H 0.159 0.841 33 H 0.066 0.934 34 H 0.070 0.930 35 H 0.061 0.939 36 H 0.124 0.876 37 H 0.129 0.871 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.949 -3.093 -6.324 7.304 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.066 4.066 2 O -0.283 6.283 3 C -0.027 4.027 4 C -0.006 4.006 5 N -0.132 5.132 6 C -0.455 4.455 7 H 0.107 0.893 8 C -0.156 4.156 9 N -0.496 5.496 10 Si 0.738 3.262 11 H -0.197 1.197 12 H -0.210 1.210 13 H -0.195 1.195 14 C 0.294 3.706 15 O -0.482 6.482 16 C -0.123 4.123 17 C -0.053 4.053 18 C -0.120 4.120 19 C -0.165 4.165 20 C -0.108 4.108 21 C -0.191 4.191 22 C 0.102 3.898 23 F -0.112 7.112 24 H 0.049 0.951 25 H 0.050 0.950 26 H 0.096 0.904 27 H 0.060 0.940 28 H 0.059 0.941 29 H 0.131 0.869 30 H 0.091 0.909 31 H 0.081 0.919 32 H 0.177 0.823 33 H 0.085 0.915 34 H 0.089 0.911 35 H 0.080 0.920 36 H 0.142 0.858 37 H 0.147 0.853 Dipole moment (debyes) X Y Z Total from point charges -1.817 -2.671 -6.036 6.846 hybrid contribution -0.652 -0.531 0.186 0.861 sum -2.469 -3.202 -5.850 7.111 Atomic orbital electron populations 1.22645 0.83339 1.01753 0.98885 1.88124 1.17471 1.27688 1.95057 1.23048 0.96424 0.84395 0.98819 1.21450 0.89213 0.99273 0.90689 1.43154 1.55410 1.07372 1.07280 1.19314 1.38874 0.82190 1.05075 0.89301 1.25283 0.93968 0.99868 0.96518 1.69886 1.28574 1.37051 1.14101 0.86245 0.78994 0.83079 0.77894 1.19685 1.21023 1.19526 1.18071 0.81593 0.86155 0.84768 1.90648 1.57453 1.13887 1.86227 1.20149 0.99906 0.98868 0.93398 1.21684 0.93884 0.91312 0.98415 1.19913 0.99806 0.99274 0.93043 1.20718 0.97234 0.95718 1.02810 1.20834 0.96037 0.96065 0.97854 1.20867 1.02285 0.99671 0.96239 1.17772 0.90706 0.87598 0.93724 1.91486 1.65098 1.57334 1.97240 0.95115 0.94954 0.90408 0.94048 0.94071 0.86925 0.90871 0.91875 0.82325 0.91527 0.91107 0.92017 0.85780 0.85296 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.51 11.01 101.05 1.11 1.62 16 2 O -0.37 -7.89 10.43 -35.23 -0.37 -8.26 16 3 C 0.05 1.08 6.24 37.16 0.23 1.31 16 4 C 0.12 2.82 5.32 -4.04 -0.02 2.80 16 5 N -0.42 -10.57 2.47 -115.97 -0.29 -10.86 16 6 C -0.33 -8.14 6.29 -15.00 -0.09 -8.24 16 7 H 0.09 2.20 6.46 -52.49 -0.34 1.86 16 8 C 0.05 1.22 4.94 -17.45 -0.09 1.14 16 9 N -0.86 -21.98 11.52 55.50 0.64 -21.34 16 10 Si 0.91 19.32 29.60 -169.99 -5.03 14.29 16 11 H -0.27 -5.52 7.11 56.52 0.40 -5.12 16 12 H -0.28 -6.02 7.11 56.52 0.40 -5.62 16 13 H -0.27 -5.87 7.11 56.52 0.40 -5.47 16 14 C 0.51 13.02 7.09 -12.45 -0.09 12.93 16 15 O -0.60 -16.64 16.00 5.27 0.08 -16.56 16 16 C -0.12 -2.69 5.27 -104.91 -0.55 -3.24 16 17 C -0.03 -0.69 7.42 -39.17 -0.29 -0.98 16 18 C -0.12 -1.96 5.87 -104.68 -0.61 -2.57 16 19 C -0.11 -1.40 10.00 36.00 0.36 -1.04 16 20 C -0.09 -1.32 9.69 -39.50 -0.38 -1.70 16 21 C -0.17 -2.80 10.01 -39.56 -0.40 -3.20 16 22 C 0.12 2.52 7.25 -38.94 -0.28 2.24 16 23 F -0.13 -2.92 16.31 2.25 0.04 -2.89 16 24 H 0.03 0.44 8.14 -51.93 -0.42 0.01 16 25 H 0.03 0.50 8.14 -51.93 -0.42 0.08 16 26 H 0.08 1.14 8.14 -51.93 -0.42 0.72 16 27 H 0.04 0.76 8.14 -51.93 -0.42 0.34 16 28 H 0.04 0.91 8.14 -51.93 -0.42 0.49 16 29 H 0.11 2.84 5.63 -51.93 -0.29 2.55 16 30 H 0.07 1.77 7.52 -51.93 -0.39 1.38 16 31 H 0.27 6.58 8.31 -40.82 -0.34 6.24 16 32 H 0.16 3.41 6.32 -52.49 -0.33 3.08 16 33 H 0.07 0.78 8.14 -51.93 -0.42 0.35 16 34 H 0.07 0.96 8.08 -51.93 -0.42 0.54 16 35 H 0.06 0.66 8.08 -51.93 -0.42 0.24 16 36 H 0.12 1.39 8.06 -52.48 -0.42 0.97 16 37 H 0.13 1.73 8.06 -52.49 -0.42 1.30 16 LS Contribution 319.42 15.07 4.81 4.81 Total: -1.00 -29.87 319.42 -5.93 -35.80 By element: Atomic # 1 Polarization: 8.66 SS G_CDS: -4.71 Total: 3.95 kcal Atomic # 6 Polarization: 2.17 SS G_CDS: -1.11 Total: 1.06 kcal Atomic # 7 Polarization: -32.56 SS G_CDS: 0.35 Total: -32.20 kcal Atomic # 8 Polarization: -24.53 SS G_CDS: -0.28 Total: -24.82 kcal Atomic # 9 Polarization: -2.92 SS G_CDS: 0.04 Total: -2.89 kcal Atomic # 14 Polarization: 19.32 SS G_CDS: -5.03 Total: 14.29 kcal Total LS contribution 4.81 Total: 4.81 kcal Total: -29.87 -5.93 -35.80 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000317113622.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -58.808 kcal (2) G-P(sol) polarization free energy of solvation -29.869 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -88.677 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -5.926 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -35.796 kcal (6) G-S(sol) free energy of system = (1) + (5) -94.603 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.44 seconds