Wall clock time and date at job start Tue Mar 31 2020 05:18:46 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42896 * 1 3 3 C 1.42901 * 113.99975 * 2 1 4 4 C 1.52998 * 109.47002 * 180.02562 * 3 2 1 5 5 N 1.46505 * 109.47514 * 64.99724 * 4 3 2 6 6 C 1.36889 * 120.00383 * 264.59201 * 5 4 3 7 7 H 1.08000 * 120.00221 * 141.12516 * 6 5 4 8 8 C 1.39042 * 119.99555 * 321.12834 * 6 5 4 9 9 N 1.31369 * 120.00176 * 340.44470 * 8 6 5 10 10 Si 1.86799 * 119.99693 * 160.44581 * 8 6 5 11 11 H 1.48504 * 109.47212 * 59.99653 * 10 8 6 12 12 H 1.48495 * 109.46987 * 179.97438 * 10 8 6 13 13 H 1.48505 * 109.47314 * 299.99819 * 10 8 6 14 14 C 1.34779 * 119.99475 * 84.58646 * 5 4 3 15 15 O 1.21604 * 120.00231 * 5.11984 * 14 5 4 16 16 C 1.47581 * 119.99666 * 185.11954 * 14 5 4 17 17 C 1.39724 * 120.17341 * 317.68020 * 16 14 5 18 18 C 1.37841 * 119.87319 * 179.72229 * 17 16 14 19 19 C 1.50690 * 119.89045 * 180.29606 * 18 17 16 20 20 C 1.38476 * 120.22013 * 0.55041 * 18 17 16 21 21 C 1.38227 * 120.35412 * 359.72334 * 20 18 17 22 22 C 1.38296 * 120.12081 * 359.97438 * 21 20 18 23 23 F 1.35095 * 120.11550 * 179.97438 * 22 21 20 24 24 H 1.09000 * 109.47319 * 299.99994 * 1 2 3 25 25 H 1.09005 * 109.47484 * 59.99847 * 1 2 3 26 26 H 1.08998 * 109.47423 * 180.02562 * 1 2 3 27 27 H 1.08996 * 109.46829 * 60.00548 * 3 2 1 28 28 H 1.08994 * 109.46965 * 299.99897 * 3 2 1 29 29 H 1.09006 * 109.46942 * 305.00501 * 4 3 2 30 30 H 1.08994 * 109.47485 * 185.00348 * 4 3 2 31 31 H 0.96995 * 120.00180 * 180.02562 * 9 8 6 32 32 H 1.07999 * 120.06168 * 359.97111 * 17 16 14 33 33 H 1.09006 * 109.47056 * 270.25463 * 19 18 17 34 34 H 1.09001 * 109.47386 * 30.25515 * 19 18 17 35 35 H 1.08995 * 109.47564 * 150.25614 * 19 18 17 36 36 H 1.08003 * 119.82338 * 179.69556 * 20 18 17 37 37 H 1.07999 * 119.94200 * 179.97438 * 21 20 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0102 1.3055 0.0000 4 6 3.5354 1.1846 -0.0006 5 7 3.9757 0.5643 -1.2527 6 6 4.2034 -0.7845 -1.3054 7 1 3.9162 -1.3468 -2.1815 8 6 4.8044 -1.4304 -0.2307 9 7 5.4926 -0.7396 0.6496 10 14 4.6332 -3.2806 -0.0388 11 1 5.2063 -3.9570 -1.2302 12 1 5.3612 -3.7215 1.1781 13 1 3.1965 -3.6344 0.0878 14 6 4.1564 1.3217 -2.3528 15 8 4.0448 2.5307 -2.2838 16 6 4.4898 0.6838 -3.6412 17 6 5.4186 -0.3589 -3.6890 18 6 5.7212 -0.9541 -4.8949 19 6 6.7178 -2.0831 -4.9460 20 6 5.1162 -0.5144 -6.0604 21 6 4.2002 0.5202 -6.0246 22 6 3.8814 1.1235 -4.8217 23 9 2.9866 2.1350 -4.7869 24 1 -0.3634 0.5138 0.8900 25 1 -0.3634 0.5139 -0.8900 26 1 -0.3634 -1.0276 0.0005 27 1 1.6886 1.8463 0.8900 28 1 1.6886 1.8463 -0.8900 29 1 3.8514 0.5681 0.8409 30 1 3.9785 2.1764 0.0890 31 1 5.9121 -1.1903 1.3990 32 1 5.8956 -0.7005 -2.7823 33 1 7.7184 -1.6780 -5.0974 34 1 6.6882 -2.6367 -4.0075 35 1 6.4680 -2.7514 -5.7700 36 1 5.3616 -0.9822 -7.0024 37 1 3.7327 0.8580 -6.9376 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000317113622.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:18:46 Heat of formation + Delta-G solvation = -112.751642 kcal Electronic energy + Delta-G solvation = -22840.288365 eV Core-core repulsion = 19303.864389 eV Total energy + Delta-G solvation = -3536.423976 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 281.121 amu Computer time = 0.51 seconds Orbital eigenvalues (eV) -49.82844 -41.00677 -39.45288 -38.50982 -36.69450 -33.58524 -33.29114 -32.58713 -30.54307 -27.46729 -27.29257 -26.77408 -25.00440 -23.67249 -22.38586 -20.99261 -19.31803 -18.12208 -18.04722 -17.49904 -17.16075 -16.87021 -16.60618 -16.38055 -16.07960 -15.72245 -15.38583 -14.99632 -14.88438 -14.49149 -14.31770 -14.22406 -13.68191 -13.38908 -13.05636 -12.91835 -12.79996 -12.70316 -12.60622 -12.53344 -12.38885 -12.11826 -12.00403 -11.85970 -11.06702 -10.61297 -10.47027 -9.87328 -9.54586 -9.33761 -8.29231 -6.00450 0.01348 0.33071 1.44137 1.51653 1.58724 1.96817 2.32081 2.67545 2.84805 2.94913 3.19213 3.36976 3.88203 4.02163 4.04431 4.18188 4.31432 4.36180 4.44348 4.48512 4.53610 4.56383 4.68941 4.77663 4.84614 4.95150 5.01229 5.09417 5.21268 5.26091 5.36320 5.44856 5.49089 5.65384 5.92794 6.03162 6.33369 6.40493 7.10950 7.48399 7.92938 8.74997 Molecular weight = 281.12amu Principal moments of inertia in cm(-1) A = 0.013147 B = 0.008720 C = 0.006248 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2129.232515 B = 3210.195098 C = 4480.651232 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.025 3.975 2 O -0.396 6.396 3 C 0.064 3.936 4 C 0.114 3.886 5 N -0.423 5.423 6 C -0.332 4.332 7 H 0.088 0.912 8 C 0.015 3.985 9 N -0.890 5.890 10 Si 0.972 3.028 11 H -0.253 1.253 12 H -0.282 1.282 13 H -0.276 1.276 14 C 0.487 3.513 15 O -0.635 6.635 16 C -0.156 4.156 17 C -0.051 4.051 18 C -0.111 4.111 19 C -0.107 4.107 20 C -0.068 4.068 21 C -0.155 4.155 22 C 0.092 3.908 23 F -0.151 7.151 24 H 0.055 0.945 25 H 0.036 0.964 26 H 0.096 0.904 27 H 0.072 0.928 28 H 0.025 0.975 29 H 0.100 0.900 30 H 0.058 0.942 31 H 0.273 0.727 32 H 0.134 0.866 33 H 0.083 0.917 34 H 0.059 0.941 35 H 0.095 0.905 36 H 0.179 0.821 37 H 0.166 0.834 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.950 -5.600 -8.671 10.505 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.071 4.071 2 O -0.315 6.315 3 C -0.013 4.013 4 C -0.010 4.010 5 N -0.138 5.138 6 C -0.460 4.460 7 H 0.105 0.895 8 C -0.188 4.188 9 N -0.527 5.527 10 Si 0.796 3.204 11 H -0.177 1.177 12 H -0.208 1.208 13 H -0.201 1.201 14 C 0.278 3.722 15 O -0.525 6.525 16 C -0.160 4.160 17 C -0.069 4.069 18 C -0.111 4.111 19 C -0.164 4.164 20 C -0.086 4.086 21 C -0.174 4.174 22 C 0.071 3.929 23 F -0.130 7.130 24 H 0.073 0.927 25 H 0.054 0.946 26 H 0.114 0.886 27 H 0.090 0.910 28 H 0.043 0.957 29 H 0.118 0.882 30 H 0.076 0.924 31 H 0.083 0.917 32 H 0.152 0.848 33 H 0.101 0.899 34 H 0.078 0.922 35 H 0.114 0.886 36 H 0.196 0.804 37 H 0.183 0.817 Dipole moment (debyes) X Y Z Total from point charges -1.822 -5.196 -8.387 10.032 hybrid contribution -0.635 0.241 0.862 1.098 sum -2.457 -4.954 -7.524 9.338 Atomic orbital electron populations 1.22899 0.80531 1.03454 1.00252 1.88053 1.20583 1.27578 1.95308 1.22805 0.94371 0.84747 0.99421 1.21423 0.91455 0.97993 0.90084 1.43382 1.55072 1.07774 1.07557 1.19410 1.39180 0.81943 1.05430 0.89454 1.26015 0.93207 1.03780 0.95841 1.69982 1.29376 1.38746 1.14644 0.85303 0.78454 0.78167 0.78474 1.17698 1.20773 1.20101 1.18762 0.81164 0.85989 0.86279 1.90580 1.59349 1.15430 1.87124 1.20074 1.02515 1.00939 0.92478 1.21498 0.94225 0.91757 0.99459 1.20330 0.99622 0.99128 0.92008 1.20812 0.97015 0.94834 1.03690 1.21422 0.93530 0.94400 0.99232 1.21314 1.01656 0.98844 0.95578 1.18197 0.91510 0.88325 0.94831 1.91430 1.65845 1.58319 1.97381 0.92672 0.94577 0.88593 0.90962 0.95704 0.88220 0.92402 0.91715 0.84825 0.89870 0.92203 0.88612 0.80366 0.81681 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.02 0.79 11.01 113.37 1.25 2.03 16 2 O -0.40 -17.27 10.43 -148.98 -1.55 -18.82 16 3 C 0.06 2.81 6.24 71.98 0.45 3.25 16 4 C 0.11 5.79 5.32 86.38 0.46 6.25 16 5 N -0.42 -22.64 2.47 -639.08 -1.58 -24.22 16 6 C -0.33 -17.10 6.29 84.10 0.53 -16.57 16 7 H 0.09 4.45 6.46 -2.91 -0.02 4.43 16 8 C 0.01 0.74 4.94 84.96 0.42 1.16 16 9 N -0.89 -46.94 11.52 21.68 0.25 -46.69 16 10 Si 0.97 39.49 29.60 68.60 2.03 41.52 16 11 H -0.25 -9.44 7.11 99.48 0.71 -8.73 16 12 H -0.28 -11.28 7.11 99.48 0.71 -10.58 16 13 H -0.28 -11.40 7.11 99.48 0.71 -10.69 16 14 C 0.49 26.68 7.09 86.71 0.61 27.29 16 15 O -0.64 -37.94 16.00 -4.04 -0.06 -38.01 16 16 C -0.16 -7.29 5.27 -20.05 -0.11 -7.40 16 17 C -0.05 -2.04 7.42 22.53 0.17 -1.88 16 18 C -0.11 -3.29 5.87 -19.90 -0.12 -3.40 16 19 C -0.11 -2.35 10.00 71.23 0.71 -1.63 16 20 C -0.07 -1.67 9.69 22.32 0.22 -1.46 16 21 C -0.16 -4.58 10.01 22.28 0.22 -4.36 16 22 C 0.09 3.79 7.25 22.69 0.16 3.95 16 23 F -0.15 -6.85 16.31 44.97 0.73 -6.11 16 24 H 0.05 1.47 8.14 -2.39 -0.02 1.45 16 25 H 0.04 1.10 8.14 -2.38 -0.02 1.08 16 26 H 0.10 2.65 8.14 -2.39 -0.02 2.63 16 27 H 0.07 2.66 8.14 -2.39 -0.02 2.64 16 28 H 0.02 1.15 8.14 -2.39 -0.02 1.13 16 29 H 0.10 5.29 5.63 -2.38 -0.01 5.28 16 30 H 0.06 3.02 7.52 -2.39 -0.02 3.00 16 31 H 0.27 13.58 8.31 -92.71 -0.77 12.81 16 32 H 0.13 5.99 6.32 -2.91 -0.02 5.97 16 33 H 0.08 1.60 8.14 -2.38 -0.02 1.58 16 34 H 0.06 1.46 8.08 -2.39 -0.02 1.45 16 35 H 0.10 1.49 8.08 -2.39 -0.02 1.47 16 36 H 0.18 2.59 8.06 -2.91 -0.02 2.56 16 37 H 0.17 3.65 8.06 -2.91 -0.02 3.63 16 Total: -1.00 -69.87 319.42 5.87 -63.99 By element: Atomic # 1 Polarization: 20.02 SS G_CDS: 1.08 Total: 21.10 kcal Atomic # 6 Polarization: 2.27 SS G_CDS: 4.98 Total: 7.25 kcal Atomic # 7 Polarization: -69.59 SS G_CDS: -1.33 Total: -70.92 kcal Atomic # 8 Polarization: -55.21 SS G_CDS: -1.62 Total: -56.83 kcal Atomic # 9 Polarization: -6.85 SS G_CDS: 0.73 Total: -6.11 kcal Atomic # 14 Polarization: 39.49 SS G_CDS: 2.03 Total: 41.52 kcal Total: -69.87 5.87 -63.99 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000317113622.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -48.759 kcal (2) G-P(sol) polarization free energy of solvation -69.867 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -118.626 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.874 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -63.993 kcal (6) G-S(sol) free energy of system = (1) + (5) -112.752 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.51 seconds