Wall clock time and date at job start Tue Mar 31 2020 05:18:49 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42894 * 1 3 3 C 1.42897 * 114.00294 * 2 1 4 4 C 1.53004 * 109.47060 * 180.02562 * 3 2 1 5 5 N 1.46497 * 109.47021 * 65.00243 * 4 3 2 6 6 C 1.36895 * 119.99613 * 269.99704 * 5 4 3 7 7 H 1.07998 * 120.00026 * 16.74834 * 6 5 4 8 8 C 1.39039 * 119.99786 * 196.74535 * 6 5 4 9 9 N 1.31371 * 119.99556 * 17.93785 * 8 6 5 10 10 Si 1.86790 * 120.00011 * 197.93155 * 8 6 5 11 11 H 1.48497 * 109.47217 * 0.02562 * 10 8 6 12 12 H 1.48500 * 109.47085 * 120.00238 * 10 8 6 13 13 H 1.48505 * 109.47483 * 240.00185 * 10 8 6 14 14 C 1.34770 * 120.00058 * 90.00254 * 5 4 3 15 15 O 1.21609 * 119.99979 * 241.61979 * 14 5 4 16 16 C 1.47607 * 120.00219 * 61.61849 * 14 5 4 17 17 C 1.39735 * 120.12433 * 29.56834 * 16 14 5 18 18 C 1.37802 * 119.87428 * 180.27578 * 17 16 14 19 19 C 1.38687 * 120.12431 * 359.97438 * 18 17 16 20 20 F 1.35099 * 119.87468 * 180.02562 * 19 18 17 21 21 C 1.38650 * 120.25563 * 0.02562 * 19 18 17 22 22 C 1.37844 * 120.12047 * 359.97438 * 21 19 18 23 23 C 1.50695 * 120.06012 * 179.97438 * 22 21 19 24 24 H 1.09005 * 109.47449 * 300.00240 * 1 2 3 25 25 H 1.08999 * 109.47411 * 59.99812 * 1 2 3 26 26 H 1.08996 * 109.47902 * 179.97438 * 1 2 3 27 27 H 1.08999 * 109.47083 * 60.00007 * 3 2 1 28 28 H 1.08996 * 109.47303 * 300.00347 * 3 2 1 29 29 H 1.09001 * 109.46645 * 305.00312 * 4 3 2 30 30 H 1.08999 * 109.46934 * 185.00326 * 4 3 2 31 31 H 0.97008 * 119.99729 * 184.95845 * 9 8 6 32 32 H 1.08000 * 120.06308 * 0.24525 * 17 16 14 33 33 H 1.08003 * 119.93568 * 179.97438 * 18 17 16 34 34 H 1.07994 * 119.93851 * 180.02562 * 21 19 18 35 35 H 1.08999 * 109.47366 * 264.11726 * 23 22 21 36 36 H 1.08995 * 109.47601 * 24.12313 * 23 22 21 37 37 H 1.09006 * 109.46916 * 144.12162 * 23 22 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4289 0.0000 0.0000 3 6 2.0102 1.3054 0.0000 4 6 3.5355 1.1845 -0.0006 5 7 3.9756 0.5643 -1.2527 6 6 4.0966 -0.7967 -1.3368 7 1 3.6230 -1.4275 -0.5992 8 6 4.8292 -1.3668 -2.3719 9 7 5.6833 -0.6363 -3.0520 10 14 4.5990 -3.1715 -2.7953 11 1 3.5862 -3.7676 -1.8876 12 1 4.1369 -3.2951 -4.2012 13 1 5.8906 -3.8865 -2.6342 14 6 4.2615 1.3336 -2.3217 15 8 3.6216 1.2100 -3.3484 16 6 5.3514 2.3262 -2.2464 17 6 6.4472 2.1023 -1.4088 18 6 7.4591 3.0351 -1.3382 19 6 7.3915 4.1942 -2.0968 20 9 8.3865 5.1051 -2.0241 21 6 6.3065 4.4217 -2.9297 22 6 5.2886 3.4955 -3.0083 23 6 4.1098 3.7445 -3.9134 24 1 -0.3634 0.5139 0.8900 25 1 -0.3634 0.5138 -0.8899 26 1 -0.3635 -1.0276 -0.0005 27 1 1.6886 1.8463 0.8900 28 1 1.6886 1.8464 -0.8899 29 1 3.8514 0.5680 0.8409 30 1 3.9786 2.1763 0.0890 31 1 6.1412 -1.0138 -3.8194 32 1 6.5009 1.2001 -0.8176 33 1 8.3064 2.8633 -0.6909 34 1 6.2593 5.3258 -3.5184 35 1 3.2956 4.1839 -3.3372 36 1 4.4015 4.4287 -4.7102 37 1 3.7795 2.8008 -4.3477 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000317153549.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:18:49 Heat of formation + Delta-G solvation = -77.093572 kcal Electronic energy + Delta-G solvation = -22726.705414 eV Core-core repulsion = 19191.827688 eV Total energy + Delta-G solvation = -3534.877726 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 281.121 amu Computer time = 0.52 seconds Orbital eigenvalues (eV) -48.53995 -39.40011 -37.67322 -36.88182 -34.51104 -32.06112 -31.91472 -30.12190 -28.76830 -26.73636 -25.90466 -24.60653 -22.91241 -22.01188 -21.15226 -19.46763 -17.27679 -16.69584 -16.24043 -15.88924 -15.71610 -15.30716 -15.23613 -14.72238 -14.38105 -14.00814 -13.74297 -13.60521 -13.13715 -12.95069 -12.70114 -12.28513 -12.16081 -11.77786 -11.63035 -11.45779 -11.33528 -11.27339 -10.94026 -10.82335 -10.62591 -10.50577 -10.28876 -10.07638 -9.15093 -8.97683 -8.47605 -8.29194 -7.97197 -7.38298 -6.14117 -3.50884 1.45125 1.79214 3.30693 3.42818 3.45610 3.64497 4.30608 4.34208 4.43958 4.65432 4.87971 5.22423 5.28036 5.30445 5.51958 5.64560 5.65762 5.70330 5.83466 5.84619 5.94546 5.96545 6.02877 6.06940 6.11689 6.17762 6.40949 6.51024 6.59822 6.65597 6.76510 6.92950 7.17525 7.42794 7.70525 7.71938 8.15874 9.03588 9.28538 9.56661 10.01756 10.99540 Molecular weight = 281.12amu Principal moments of inertia in cm(-1) A = 0.015180 B = 0.006908 C = 0.005635 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1844.120992 B = 4052.512512 C = 4967.990897 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.033 3.967 2 O -0.366 6.366 3 C 0.046 3.954 4 C 0.131 3.869 5 N -0.536 5.536 6 C -0.271 4.271 7 H 0.090 0.910 8 C 0.022 3.978 9 N -0.883 5.883 10 Si 0.913 3.087 11 H -0.273 1.273 12 H -0.286 1.286 13 H -0.288 1.288 14 C 0.616 3.384 15 O -0.516 6.516 16 C -0.104 4.104 17 C -0.023 4.023 18 C -0.177 4.177 19 C 0.095 3.905 20 F -0.150 7.150 21 C -0.173 4.173 22 C -0.026 4.026 23 C -0.135 4.135 24 H 0.030 0.970 25 H 0.034 0.966 26 H 0.079 0.921 27 H 0.040 0.960 28 H 0.042 0.958 29 H 0.073 0.927 30 H 0.066 0.934 31 H 0.267 0.733 32 H 0.142 0.858 33 H 0.128 0.872 34 H 0.127 0.873 35 H 0.063 0.937 36 H 0.055 0.945 37 H 0.113 0.887 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.326 7.860 5.223 9.720 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.064 4.064 2 O -0.284 6.284 3 C -0.032 4.032 4 C 0.006 3.994 5 N -0.263 5.263 6 C -0.398 4.398 7 H 0.108 0.892 8 C -0.180 4.180 9 N -0.525 5.525 10 Si 0.741 3.259 11 H -0.197 1.197 12 H -0.212 1.212 13 H -0.215 1.215 14 C 0.408 3.592 15 O -0.392 6.392 16 C -0.109 4.109 17 C -0.041 4.041 18 C -0.196 4.196 19 C 0.076 3.924 20 F -0.128 7.128 21 C -0.192 4.192 22 C -0.027 4.027 23 C -0.191 4.191 24 H 0.048 0.952 25 H 0.053 0.947 26 H 0.097 0.903 27 H 0.058 0.942 28 H 0.060 0.940 29 H 0.091 0.909 30 H 0.084 0.916 31 H 0.078 0.922 32 H 0.160 0.840 33 H 0.146 0.854 34 H 0.145 0.855 35 H 0.081 0.919 36 H 0.074 0.926 37 H 0.131 0.869 Dipole moment (debyes) X Y Z Total from point charges -2.359 7.592 4.556 9.163 hybrid contribution 0.146 -0.489 -0.362 0.625 sum -2.214 7.103 4.194 8.541 Atomic orbital electron populations 1.22645 0.82910 1.01993 0.98895 1.88077 1.17901 1.27343 1.95038 1.23216 0.96431 0.84946 0.98649 1.21110 0.90863 0.97809 0.89636 1.42500 1.70634 1.05454 1.07722 1.19347 1.27189 0.80014 1.13233 0.89204 1.24998 0.94754 0.99314 0.98888 1.69407 1.24974 1.38214 1.19886 0.86084 0.77569 0.83714 0.78512 1.19727 1.21232 1.21524 1.17188 0.81029 0.77741 0.83255 1.90386 1.49403 1.65834 1.33570 1.20591 0.98384 0.94558 0.97325 1.21221 0.90968 0.97050 0.94908 1.21022 1.01474 0.94260 1.02826 1.17813 0.86625 0.88303 0.99656 1.91435 1.59959 1.66007 1.95439 1.20791 0.94603 1.01461 1.02383 1.19887 0.95385 0.92194 0.95271 1.21208 0.94910 1.05215 0.97812 0.95168 0.94699 0.90282 0.94174 0.93962 0.90863 0.91592 0.92181 0.83987 0.85361 0.85474 0.91859 0.92590 0.86903 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.48 11.01 101.05 1.11 1.59 16 2 O -0.37 -7.04 10.07 -35.23 -0.35 -7.39 16 3 C 0.05 0.81 6.28 37.16 0.23 1.04 16 4 C 0.13 2.47 5.89 -4.04 -0.02 2.45 16 5 N -0.54 -12.72 2.09 -115.97 -0.24 -12.96 16 6 C -0.27 -7.11 9.13 -14.99 -0.14 -7.25 16 7 H 0.09 2.35 7.78 -52.49 -0.41 1.94 16 8 C 0.02 0.59 5.05 -17.45 -0.09 0.51 16 9 N -0.88 -24.66 11.11 55.50 0.62 -24.04 16 10 Si 0.91 21.75 29.59 -169.99 -5.03 16.72 16 11 H -0.27 -6.36 7.11 56.52 0.40 -5.96 16 12 H -0.29 -7.04 7.11 56.52 0.40 -6.63 16 13 H -0.29 -6.78 7.11 56.52 0.40 -6.37 16 14 C 0.62 15.09 3.62 -12.44 -0.05 15.05 16 15 O -0.52 -14.13 14.05 5.27 0.07 -14.06 16 16 C -0.10 -2.23 5.12 -104.97 -0.54 -2.77 16 17 C -0.02 -0.45 9.44 -39.18 -0.37 -0.82 16 18 C -0.18 -3.06 10.01 -39.58 -0.40 -3.46 16 19 C 0.10 1.63 7.31 -39.26 -0.29 1.34 16 20 F -0.15 -2.44 17.26 2.25 0.04 -2.40 16 21 C -0.17 -2.94 9.64 -39.57 -0.38 -3.32 16 22 C -0.03 -0.50 5.91 -104.22 -0.62 -1.12 16 23 C -0.14 -2.39 9.37 36.00 0.34 -2.05 16 24 H 0.03 0.37 8.14 -51.93 -0.42 -0.06 16 25 H 0.03 0.50 8.14 -51.93 -0.42 0.08 16 26 H 0.08 1.06 8.14 -51.93 -0.42 0.63 16 27 H 0.04 0.56 8.14 -51.93 -0.42 0.14 16 28 H 0.04 0.78 8.14 -51.93 -0.42 0.35 16 29 H 0.07 1.32 8.04 -51.93 -0.42 0.90 16 30 H 0.07 1.10 7.57 -51.93 -0.39 0.70 16 31 H 0.27 7.37 8.32 -40.82 -0.34 7.04 16 32 H 0.14 2.97 7.87 -52.49 -0.41 2.55 16 33 H 0.13 1.90 8.06 -52.48 -0.42 1.48 16 34 H 0.13 1.83 8.06 -52.49 -0.42 1.40 16 35 H 0.06 1.01 8.14 -51.93 -0.42 0.59 16 36 H 0.06 0.83 8.05 -51.93 -0.42 0.41 16 37 H 0.11 2.38 5.25 -51.93 -0.27 2.10 16 LS Contribution 321.12 15.07 4.84 4.84 Total: -1.00 -30.70 321.12 -6.10 -36.79 By element: Atomic # 1 Polarization: 6.15 SS G_CDS: -4.84 Total: 1.31 kcal Atomic # 6 Polarization: 2.39 SS G_CDS: -1.20 Total: 1.19 kcal Atomic # 7 Polarization: -37.38 SS G_CDS: 0.37 Total: -37.00 kcal Atomic # 8 Polarization: -21.17 SS G_CDS: -0.28 Total: -21.45 kcal Atomic # 9 Polarization: -2.44 SS G_CDS: 0.04 Total: -2.40 kcal Atomic # 14 Polarization: 21.75 SS G_CDS: -5.03 Total: 16.72 kcal Total LS contribution 4.84 Total: 4.84 kcal Total: -30.70 -6.10 -36.79 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000317153549.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -40.302 kcal (2) G-P(sol) polarization free energy of solvation -30.696 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -70.998 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.096 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.792 kcal (6) G-S(sol) free energy of system = (1) + (5) -77.094 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.52 seconds