Wall clock time and date at job start Tue Mar 31 2020 05:19:30 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42904 * 1 3 3 C 1.42891 * 114.00172 * 2 1 4 4 C 1.52993 * 109.47505 * 180.02562 * 3 2 1 5 5 N 1.46503 * 109.47035 * 65.00011 * 4 3 2 6 6 C 1.36877 * 119.99840 * 282.26848 * 5 4 3 7 7 H 1.07996 * 120.00323 * 315.11725 * 6 5 4 8 8 C 1.39046 * 119.99480 * 135.10501 * 6 5 4 9 9 N 1.31364 * 120.00424 * 338.02189 * 8 6 5 10 10 Si 1.86800 * 119.99730 * 158.02233 * 8 6 5 11 11 H 1.48497 * 109.47607 * 94.98601 * 10 8 6 12 12 H 1.48505 * 109.47055 * 214.98407 * 10 8 6 13 13 H 1.48501 * 109.47119 * 334.98281 * 10 8 6 14 14 C 1.34770 * 120.00401 * 102.27635 * 5 4 3 15 15 O 1.21586 * 120.00210 * 186.72208 * 14 5 4 16 16 C 1.47734 * 119.99819 * 6.72050 * 14 5 4 17 17 C 1.39661 * 120.14115 * 143.50712 * 16 14 5 18 18 C 1.37919 * 119.90096 * 180.23297 * 17 16 14 19 19 C 1.38366 * 120.18046 * 359.50672 * 18 17 16 20 20 C 1.50697 * 119.86216 * 180.21279 * 19 18 17 21 21 C 1.38569 * 120.27630 * 0.47464 * 19 18 17 22 22 F 1.35096 * 119.95216 * 179.76974 * 21 19 18 23 23 C 1.38193 * 120.09716 * 359.78215 * 21 19 18 24 24 H 1.09001 * 109.46993 * 299.99763 * 1 2 3 25 25 H 1.08999 * 109.47222 * 60.00031 * 1 2 3 26 26 H 1.09000 * 109.46908 * 179.97438 * 1 2 3 27 27 H 1.08998 * 109.47257 * 60.00013 * 3 2 1 28 28 H 1.09006 * 109.47115 * 299.99971 * 3 2 1 29 29 H 1.09004 * 109.47237 * 304.99829 * 4 3 2 30 30 H 1.08999 * 109.47664 * 184.99768 * 4 3 2 31 31 H 0.97007 * 119.99948 * 185.05299 * 9 8 6 32 32 H 1.08005 * 120.04956 * 359.94980 * 17 16 14 33 33 H 1.07999 * 119.91563 * 179.72186 * 18 17 16 34 34 H 1.08997 * 109.47090 * 270.25408 * 20 19 18 35 35 H 1.09002 * 109.47014 * 30.25778 * 20 19 18 36 36 H 1.08995 * 109.47019 * 150.25377 * 20 19 18 37 37 H 1.08001 * 120.08482 * 180.02562 * 23 21 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0103 1.3054 0.0000 4 6 3.5354 1.1846 -0.0006 5 7 3.9756 0.5644 -1.2528 6 6 3.8590 -0.7886 -1.4243 7 1 4.1539 -1.4608 -0.6321 8 6 3.3607 -1.2975 -2.6185 9 7 2.6160 -0.5429 -3.3942 10 14 3.7502 -3.0543 -3.1198 11 1 2.6458 -3.9486 -2.6887 12 1 3.8983 -3.1267 -4.5956 13 1 5.0162 -3.4843 -2.4736 14 6 4.4955 1.3259 -2.2357 15 8 4.7473 0.8327 -3.3182 16 6 4.7595 2.7598 -1.9979 17 6 5.8798 3.3703 -2.5661 18 6 6.1241 4.7082 -2.3369 19 6 5.2569 5.4495 -1.5540 20 6 5.5281 6.9120 -1.3122 21 6 4.1429 4.8515 -0.9869 22 9 3.3031 5.5804 -0.2198 23 6 3.8900 3.5105 -1.2047 24 1 -0.3633 0.5138 0.8900 25 1 -0.3633 0.5138 -0.8900 26 1 -0.3633 -1.0277 -0.0005 27 1 1.6887 1.8463 0.8900 28 1 1.6886 1.8463 -0.8900 29 1 3.8515 0.5682 0.8410 30 1 3.9786 2.1764 0.0889 31 1 2.2081 -0.9191 -4.1898 32 1 6.5563 2.7945 -3.1804 33 1 6.9927 5.1795 -2.7725 34 1 6.1461 7.0245 -0.4214 35 1 6.0503 7.3317 -2.1721 36 1 4.5842 7.4377 -1.1683 37 1 3.0215 3.0446 -0.7630 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000317178097.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:19:30 Heat of formation + Delta-G solvation = -64.801993 kcal Electronic energy + Delta-G solvation = -22756.813173 eV Core-core repulsion = 19222.468450 eV Total energy + Delta-G solvation = -3534.344724 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 281.121 amu Computer time = 0.43 seconds Orbital eigenvalues (eV) -48.66973 -39.56723 -37.67297 -36.80423 -34.26107 -32.94243 -31.58657 -30.26004 -28.82810 -27.30897 -25.72507 -24.52098 -22.59075 -22.33360 -21.46787 -19.61826 -17.45843 -16.50599 -16.36244 -15.86038 -15.53911 -15.41758 -15.05018 -14.93150 -14.44773 -14.20129 -13.80573 -13.58437 -13.32635 -13.19500 -12.85781 -12.47361 -12.27896 -12.06382 -11.49774 -11.37396 -11.30022 -11.25472 -11.03815 -10.77968 -10.69321 -10.51911 -10.36416 -10.07121 -8.92550 -8.68997 -8.56697 -8.32148 -8.05734 -7.12112 -6.06141 -3.72584 1.28195 1.48329 3.35242 3.44577 3.46996 3.63730 4.28916 4.41890 4.48653 4.62557 4.82409 4.94550 4.98432 5.25795 5.30891 5.56412 5.58066 5.61601 5.70747 5.75380 5.82972 5.83935 5.90785 5.97304 6.02464 6.10589 6.22007 6.23584 6.32073 6.39684 6.58995 6.60306 6.82195 7.17216 7.70542 7.93729 8.31080 9.05904 9.15630 9.65730 10.24558 11.02613 Molecular weight = 281.12amu Principal moments of inertia in cm(-1) A = 0.019486 B = 0.006461 C = 0.005143 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1436.589604 B = 4332.699201 C = 5443.494474 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.035 3.965 2 O -0.347 6.347 3 C 0.054 3.946 4 C 0.079 3.921 5 N -0.428 5.428 6 C -0.327 4.327 7 H 0.081 0.919 8 C 0.080 3.920 9 N -0.818 5.818 10 Si 0.909 3.091 11 H -0.284 1.284 12 H -0.285 1.285 13 H -0.271 1.271 14 C 0.493 3.507 15 O -0.528 6.528 16 C -0.065 4.065 17 C -0.089 4.089 18 C -0.099 4.099 19 C -0.129 4.129 20 C -0.109 4.109 21 C 0.086 3.914 22 F -0.144 7.144 23 C -0.154 4.154 24 H 0.025 0.975 25 H 0.034 0.966 26 H 0.077 0.923 27 H 0.036 0.964 28 H 0.047 0.953 29 H 0.067 0.933 30 H 0.091 0.909 31 H 0.262 0.738 32 H 0.134 0.866 33 H 0.130 0.870 34 H 0.069 0.931 35 H 0.068 0.932 36 H 0.066 0.934 37 H 0.151 0.849 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.385 10.533 6.345 12.374 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.062 4.062 2 O -0.264 6.264 3 C -0.024 4.024 4 C -0.045 4.045 5 N -0.148 5.148 6 C -0.454 4.454 7 H 0.099 0.901 8 C -0.132 4.132 9 N -0.451 5.451 10 Si 0.736 3.264 11 H -0.210 1.210 12 H -0.211 1.211 13 H -0.196 1.196 14 C 0.282 3.718 15 O -0.407 6.407 16 C -0.069 4.069 17 C -0.108 4.108 18 C -0.117 4.117 19 C -0.131 4.131 20 C -0.166 4.166 21 C 0.067 3.933 22 F -0.122 7.122 23 C -0.173 4.173 24 H 0.044 0.956 25 H 0.053 0.947 26 H 0.095 0.905 27 H 0.054 0.946 28 H 0.065 0.935 29 H 0.086 0.914 30 H 0.109 0.891 31 H 0.072 0.928 32 H 0.152 0.848 33 H 0.148 0.852 34 H 0.088 0.912 35 H 0.087 0.913 36 H 0.085 0.915 37 H 0.168 0.832 Dipole moment (debyes) X Y Z Total from point charges 1.531 10.127 5.614 11.679 hybrid contribution -0.582 -0.402 -0.119 0.718 sum 0.949 9.725 5.494 11.210 Atomic orbital electron populations 1.22606 0.83281 1.01813 0.98532 1.88178 1.17406 1.25991 1.94847 1.22888 0.95304 0.85863 0.98375 1.22236 0.92041 0.99269 0.90974 1.43119 1.52189 1.07127 1.12324 1.18870 1.44761 0.79730 1.02021 0.90123 1.25180 0.93385 0.98024 0.96575 1.69839 1.25368 1.36361 1.13544 0.86252 0.78735 0.83352 0.78021 1.21028 1.21080 1.19562 1.17798 0.83120 0.84252 0.86671 1.90640 1.54136 1.72674 1.23211 1.20520 0.94654 0.96343 0.95426 1.21234 0.96916 0.94257 0.98425 1.20792 0.98866 0.93716 0.98321 1.19894 0.95351 0.97131 1.00689 1.20671 1.02400 0.91301 1.02191 1.17421 0.90449 0.89545 0.95870 1.91440 1.70199 1.77338 1.73244 1.21945 1.02344 0.92130 1.00879 0.95648 0.94695 0.90454 0.94558 0.93531 0.91419 0.89110 0.92791 0.84798 0.85223 0.91190 0.91266 0.91528 0.83211 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.60 11.01 101.05 1.11 1.71 16 2 O -0.35 -7.43 9.60 -35.23 -0.34 -7.77 16 3 C 0.05 1.04 5.22 37.15 0.19 1.23 16 4 C 0.08 1.59 5.34 -4.04 -0.02 1.56 16 5 N -0.43 -10.73 2.53 -115.93 -0.29 -11.02 16 6 C -0.33 -8.99 8.12 -15.00 -0.12 -9.11 16 7 H 0.08 2.18 7.92 -52.49 -0.42 1.76 16 8 C 0.08 2.26 4.26 -17.45 -0.07 2.18 16 9 N -0.82 -24.20 11.87 55.50 0.66 -23.55 16 10 Si 0.91 22.15 29.61 -169.99 -5.03 17.12 16 11 H -0.28 -6.68 7.11 56.52 0.40 -6.28 16 12 H -0.29 -7.06 7.11 56.52 0.40 -6.66 16 13 H -0.27 -6.49 7.11 56.52 0.40 -6.09 16 14 C 0.49 12.66 6.84 -12.38 -0.08 12.57 16 15 O -0.53 -15.67 14.47 5.29 0.08 -15.59 16 16 C -0.07 -1.35 5.43 -104.98 -0.57 -1.92 16 17 C -0.09 -1.58 9.62 -39.17 -0.38 -1.96 16 18 C -0.10 -1.41 9.68 -39.65 -0.38 -1.80 16 19 C -0.13 -1.84 5.89 -104.45 -0.62 -2.46 16 20 C -0.11 -1.16 9.83 36.00 0.35 -0.81 16 21 C 0.09 1.39 7.23 -39.48 -0.29 1.11 16 22 F -0.14 -2.21 16.46 2.25 0.04 -2.18 16 23 C -0.15 -2.80 7.35 -39.09 -0.29 -3.09 16 24 H 0.03 0.36 8.14 -51.93 -0.42 -0.06 16 25 H 0.03 0.60 8.14 -51.93 -0.42 0.18 16 26 H 0.08 1.23 8.14 -51.93 -0.42 0.81 16 27 H 0.04 0.57 8.14 -51.93 -0.42 0.15 16 28 H 0.05 0.97 7.11 -51.93 -0.37 0.60 16 29 H 0.07 1.30 8.13 -51.93 -0.42 0.88 16 30 H 0.09 1.63 4.11 -51.93 -0.21 1.41 16 31 H 0.26 7.46 8.32 -40.82 -0.34 7.12 16 32 H 0.13 2.36 8.02 -52.48 -0.42 1.94 16 33 H 0.13 1.42 8.06 -52.49 -0.42 1.00 16 34 H 0.07 0.66 8.14 -51.93 -0.42 0.24 16 35 H 0.07 0.62 8.08 -51.93 -0.42 0.20 16 36 H 0.07 0.70 7.63 -51.93 -0.40 0.31 16 37 H 0.15 2.72 3.44 -52.49 -0.18 2.54 16 LS Contribution 313.20 15.07 4.72 4.72 Total: -1.00 -33.16 313.20 -5.84 -39.00 By element: Atomic # 1 Polarization: 4.55 SS G_CDS: -4.51 Total: 0.04 kcal Atomic # 6 Polarization: 0.39 SS G_CDS: -1.16 Total: -0.78 kcal Atomic # 7 Polarization: -34.93 SS G_CDS: 0.37 Total: -34.57 kcal Atomic # 8 Polarization: -23.10 SS G_CDS: -0.26 Total: -23.36 kcal Atomic # 9 Polarization: -2.21 SS G_CDS: 0.04 Total: -2.18 kcal Atomic # 14 Polarization: 22.15 SS G_CDS: -5.03 Total: 17.12 kcal Total LS contribution 4.72 Total: 4.72 kcal Total: -33.16 -5.84 -39.00 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000317178097.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -25.799 kcal (2) G-P(sol) polarization free energy of solvation -33.160 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -58.959 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -5.843 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.003 kcal (6) G-S(sol) free energy of system = (1) + (5) -64.802 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.43 seconds