Wall clock time and date at job start Tue Mar 31 2020 05:19:30 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42904 * 1 3 3 C 1.42891 * 114.00172 * 2 1 4 4 C 1.52993 * 109.47505 * 180.02562 * 3 2 1 5 5 N 1.46503 * 109.47035 * 65.00011 * 4 3 2 6 6 C 1.36877 * 119.99840 * 282.26848 * 5 4 3 7 7 H 1.07996 * 120.00323 * 315.11725 * 6 5 4 8 8 C 1.39046 * 119.99480 * 135.10501 * 6 5 4 9 9 N 1.31364 * 120.00424 * 338.02189 * 8 6 5 10 10 Si 1.86800 * 119.99730 * 158.02233 * 8 6 5 11 11 H 1.48497 * 109.47607 * 94.98601 * 10 8 6 12 12 H 1.48505 * 109.47055 * 214.98407 * 10 8 6 13 13 H 1.48501 * 109.47119 * 334.98281 * 10 8 6 14 14 C 1.34770 * 120.00401 * 102.27635 * 5 4 3 15 15 O 1.21586 * 120.00210 * 186.72208 * 14 5 4 16 16 C 1.47734 * 119.99819 * 6.72050 * 14 5 4 17 17 C 1.39661 * 120.14115 * 143.50712 * 16 14 5 18 18 C 1.37919 * 119.90096 * 180.23297 * 17 16 14 19 19 C 1.38366 * 120.18046 * 359.50672 * 18 17 16 20 20 C 1.50697 * 119.86216 * 180.21279 * 19 18 17 21 21 C 1.38569 * 120.27630 * 0.47464 * 19 18 17 22 22 F 1.35096 * 119.95216 * 179.76974 * 21 19 18 23 23 C 1.38193 * 120.09716 * 359.78215 * 21 19 18 24 24 H 1.09001 * 109.46993 * 299.99763 * 1 2 3 25 25 H 1.08999 * 109.47222 * 60.00031 * 1 2 3 26 26 H 1.09000 * 109.46908 * 179.97438 * 1 2 3 27 27 H 1.08998 * 109.47257 * 60.00013 * 3 2 1 28 28 H 1.09006 * 109.47115 * 299.99971 * 3 2 1 29 29 H 1.09004 * 109.47237 * 304.99829 * 4 3 2 30 30 H 1.08999 * 109.47664 * 184.99768 * 4 3 2 31 31 H 0.97007 * 119.99948 * 185.05299 * 9 8 6 32 32 H 1.08005 * 120.04956 * 359.94980 * 17 16 14 33 33 H 1.07999 * 119.91563 * 179.72186 * 18 17 16 34 34 H 1.08997 * 109.47090 * 270.25408 * 20 19 18 35 35 H 1.09002 * 109.47014 * 30.25778 * 20 19 18 36 36 H 1.08995 * 109.47019 * 150.25377 * 20 19 18 37 37 H 1.08001 * 120.08482 * 180.02562 * 23 21 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0103 1.3054 0.0000 4 6 3.5354 1.1846 -0.0006 5 7 3.9756 0.5644 -1.2528 6 6 3.8590 -0.7886 -1.4243 7 1 4.1539 -1.4608 -0.6321 8 6 3.3607 -1.2975 -2.6185 9 7 2.6160 -0.5429 -3.3942 10 14 3.7502 -3.0543 -3.1198 11 1 2.6458 -3.9486 -2.6887 12 1 3.8983 -3.1267 -4.5956 13 1 5.0162 -3.4843 -2.4736 14 6 4.4955 1.3259 -2.2357 15 8 4.7473 0.8327 -3.3182 16 6 4.7595 2.7598 -1.9979 17 6 5.8798 3.3703 -2.5661 18 6 6.1241 4.7082 -2.3369 19 6 5.2569 5.4495 -1.5540 20 6 5.5281 6.9120 -1.3122 21 6 4.1429 4.8515 -0.9869 22 9 3.3031 5.5804 -0.2198 23 6 3.8900 3.5105 -1.2047 24 1 -0.3633 0.5138 0.8900 25 1 -0.3633 0.5138 -0.8900 26 1 -0.3633 -1.0277 -0.0005 27 1 1.6887 1.8463 0.8900 28 1 1.6886 1.8463 -0.8900 29 1 3.8515 0.5682 0.8410 30 1 3.9786 2.1764 0.0889 31 1 2.2081 -0.9191 -4.1898 32 1 6.5563 2.7945 -3.1804 33 1 6.9927 5.1795 -2.7725 34 1 6.1461 7.0245 -0.4214 35 1 6.0503 7.3317 -2.1721 36 1 4.5842 7.4377 -1.1683 37 1 3.0215 3.0446 -0.7630 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000317178097.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:19:30 Heat of formation + Delta-G solvation = -86.180387 kcal Electronic energy + Delta-G solvation = -22757.740210 eV Core-core repulsion = 19222.468450 eV Total energy + Delta-G solvation = -3535.271760 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 281.121 amu Computer time = 0.46 seconds Orbital eigenvalues (eV) -49.91579 -41.17435 -39.18393 -38.46098 -36.15552 -34.53362 -33.25145 -31.66115 -30.47094 -28.64417 -27.18761 -26.32704 -24.02225 -23.81268 -22.93781 -21.30166 -19.16988 -18.17487 -17.87826 -17.25035 -16.96836 -16.95886 -16.67520 -16.33248 -16.07751 -15.86955 -15.64241 -15.02946 -14.72240 -14.35084 -14.18289 -14.08534 -13.63956 -13.28545 -13.14124 -12.94363 -12.86064 -12.66935 -12.58169 -12.54987 -12.48602 -12.16699 -11.96581 -11.82043 -10.77512 -10.39278 -10.20479 -9.80983 -9.57548 -9.13498 -8.15469 -5.85950 -0.07439 0.16661 1.38559 1.45474 1.52907 2.14599 2.38776 2.78761 2.95585 3.10083 3.26387 3.30064 3.71043 3.78961 4.02724 4.13261 4.27254 4.28461 4.35887 4.44149 4.50574 4.59036 4.63909 4.65151 4.75265 4.84039 4.86245 5.00076 5.04713 5.07154 5.22360 5.35205 5.43501 5.56543 5.89329 6.23902 6.48571 7.05441 7.16703 7.65990 8.28168 8.93747 Molecular weight = 281.12amu Principal moments of inertia in cm(-1) A = 0.019486 B = 0.006461 C = 0.005143 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1436.589604 B = 4332.699201 C = 5443.494474 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.032 3.968 2 O -0.384 6.384 3 C 0.058 3.942 4 C 0.077 3.923 5 N -0.442 5.442 6 C -0.342 4.342 7 H 0.077 0.923 8 C 0.034 3.966 9 N -0.858 5.858 10 Si 0.964 3.036 11 H -0.269 1.269 12 H -0.295 1.295 13 H -0.265 1.265 14 C 0.487 3.513 15 O -0.583 6.583 16 C -0.099 4.099 17 C -0.095 4.095 18 C -0.083 4.083 19 C -0.109 4.109 20 C -0.110 4.110 21 C 0.083 3.917 22 F -0.137 7.137 23 C -0.156 4.156 24 H 0.060 0.940 25 H 0.023 0.977 26 H 0.084 0.916 27 H 0.080 0.920 28 H 0.024 0.976 29 H 0.074 0.926 30 H 0.114 0.886 31 H 0.256 0.744 32 H 0.127 0.873 33 H 0.174 0.826 34 H 0.090 0.910 35 H 0.094 0.906 36 H 0.069 0.931 37 H 0.146 0.854 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.231 13.200 7.807 15.498 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.064 4.064 2 O -0.303 6.303 3 C -0.019 4.019 4 C -0.046 4.046 5 N -0.162 5.162 6 C -0.469 4.469 7 H 0.095 0.905 8 C -0.173 4.173 9 N -0.492 5.492 10 Si 0.789 3.211 11 H -0.194 1.194 12 H -0.221 1.221 13 H -0.190 1.190 14 C 0.277 3.723 15 O -0.466 6.466 16 C -0.103 4.103 17 C -0.114 4.114 18 C -0.101 4.101 19 C -0.110 4.110 20 C -0.166 4.166 21 C 0.064 3.936 22 F -0.116 7.116 23 C -0.176 4.176 24 H 0.079 0.921 25 H 0.041 0.959 26 H 0.102 0.898 27 H 0.098 0.902 28 H 0.042 0.958 29 H 0.092 0.908 30 H 0.132 0.868 31 H 0.065 0.935 32 H 0.145 0.855 33 H 0.192 0.808 34 H 0.109 0.891 35 H 0.113 0.887 36 H 0.088 0.912 37 H 0.163 0.837 Dipole moment (debyes) X Y Z Total from point charges 2.364 12.805 7.133 14.847 hybrid contribution -0.786 -1.009 -0.486 1.369 sum 1.578 11.796 6.647 13.632 Atomic orbital electron populations 1.22752 0.81327 1.02728 0.99612 1.88109 1.19738 1.27308 1.95109 1.22868 0.94444 0.85403 0.99223 1.22445 0.93049 1.00252 0.88854 1.43305 1.52386 1.06736 1.13730 1.19004 1.44652 0.81253 1.01997 0.90495 1.25917 0.93245 1.01460 0.96708 1.69955 1.27337 1.37898 1.14047 0.85407 0.79076 0.79745 0.76880 1.19425 1.22094 1.18951 1.18563 0.81622 0.86342 0.85781 1.90578 1.56165 1.74543 1.25300 1.20120 0.97339 0.93935 0.98910 1.21347 0.96012 0.95947 0.98115 1.21181 0.99840 0.91866 0.97192 1.20419 0.93453 0.99112 0.98003 1.20827 1.03359 0.88146 1.04285 1.17438 0.91258 0.88761 0.96186 1.91460 1.70162 1.76879 1.73060 1.21806 1.01816 0.93255 1.00685 0.92135 0.95850 0.89771 0.90229 0.95797 0.90777 0.86830 0.93528 0.85534 0.80848 0.89124 0.88687 0.91230 0.83663 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 1.09 11.01 113.37 1.25 2.34 16 2 O -0.38 -16.59 9.60 -148.98 -1.43 -18.02 16 3 C 0.06 2.23 5.22 71.98 0.38 2.61 16 4 C 0.08 3.11 5.34 86.38 0.46 3.57 16 5 N -0.44 -22.96 2.53 -638.95 -1.61 -24.57 16 6 C -0.34 -19.48 8.12 84.10 0.68 -18.79 16 7 H 0.08 4.30 7.92 -2.91 -0.02 4.28 16 8 C 0.03 1.99 4.26 84.96 0.36 2.35 16 9 N -0.86 -53.28 11.87 21.68 0.26 -53.03 16 10 Si 0.96 47.10 29.61 68.60 2.03 49.13 16 11 H -0.27 -12.32 7.11 99.48 0.71 -11.61 16 12 H -0.29 -14.70 7.11 99.48 0.71 -13.99 16 13 H -0.27 -12.52 7.11 99.48 0.71 -11.81 16 14 C 0.49 26.02 6.84 86.75 0.59 26.61 16 15 O -0.58 -36.46 14.47 -3.99 -0.06 -36.52 16 16 C -0.10 -4.14 5.43 -20.10 -0.11 -4.25 16 17 C -0.09 -3.28 9.62 22.54 0.22 -3.07 16 18 C -0.08 -2.06 9.68 22.22 0.22 -1.85 16 19 C -0.11 -2.64 5.89 -19.76 -0.12 -2.75 16 20 C -0.11 -1.73 9.83 71.24 0.70 -1.03 16 21 C 0.08 2.44 7.23 22.34 0.16 2.61 16 22 F -0.14 -3.80 16.46 44.97 0.74 -3.06 16 23 C -0.16 -5.59 7.35 22.59 0.17 -5.42 16 24 H 0.06 1.59 8.14 -2.39 -0.02 1.57 16 25 H 0.02 0.82 8.14 -2.39 -0.02 0.80 16 26 H 0.08 2.65 8.14 -2.39 -0.02 2.63 16 27 H 0.08 2.33 8.14 -2.39 -0.02 2.32 16 28 H 0.02 1.02 7.11 -2.38 -0.02 1.00 16 29 H 0.07 2.85 8.13 -2.39 -0.02 2.84 16 30 H 0.11 4.02 4.11 -2.39 -0.01 4.02 16 31 H 0.26 15.36 8.32 -92.70 -0.77 14.59 16 32 H 0.13 4.50 8.02 -2.91 -0.02 4.47 16 33 H 0.17 2.82 8.06 -2.91 -0.02 2.80 16 34 H 0.09 1.17 8.14 -2.39 -0.02 1.15 16 35 H 0.09 1.09 8.08 -2.39 -0.02 1.07 16 36 H 0.07 1.12 7.63 -2.39 -0.02 1.10 16 37 H 0.15 5.25 3.44 -2.91 -0.01 5.24 16 Total: -1.00 -76.65 313.20 5.97 -70.68 By element: Atomic # 1 Polarization: 11.37 SS G_CDS: 1.09 Total: 12.46 kcal Atomic # 6 Polarization: -2.02 SS G_CDS: 4.96 Total: 2.93 kcal Atomic # 7 Polarization: -76.24 SS G_CDS: -1.36 Total: -77.60 kcal Atomic # 8 Polarization: -53.05 SS G_CDS: -1.49 Total: -54.54 kcal Atomic # 9 Polarization: -3.80 SS G_CDS: 0.74 Total: -3.06 kcal Atomic # 14 Polarization: 47.10 SS G_CDS: 2.03 Total: 49.13 kcal Total: -76.65 5.97 -70.68 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000317178097.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -15.504 kcal (2) G-P(sol) polarization free energy of solvation -76.650 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -92.154 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.974 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -70.676 kcal (6) G-S(sol) free energy of system = (1) + (5) -86.180 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.46 seconds