Wall clock time and date at job start Tue Mar 31 2020 05:19:33 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42902 * 1 3 3 C 1.42902 * 114.00427 * 2 1 4 4 C 1.52995 * 109.47324 * 179.97438 * 3 2 1 5 5 N 1.46505 * 109.46929 * 65.00321 * 4 3 2 6 6 C 1.36891 * 119.99544 * 262.12830 * 5 4 3 7 7 H 1.08003 * 120.00161 * 143.42113 * 6 5 4 8 8 C 1.39040 * 120.00224 * 323.41415 * 6 5 4 9 9 N 1.31376 * 119.99833 * 337.45816 * 8 6 5 10 10 Si 1.86796 * 119.99934 * 157.45509 * 8 6 5 11 11 H 1.48504 * 109.46919 * 90.00273 * 10 8 6 12 12 H 1.48494 * 109.47172 * 210.00246 * 10 8 6 13 13 H 1.48498 * 109.47386 * 330.00332 * 10 8 6 14 14 C 1.34771 * 120.00227 * 82.12745 * 5 4 3 15 15 O 1.21607 * 120.00038 * 5.72247 * 14 5 4 16 16 C 1.47579 * 120.00242 * 185.71852 * 14 5 4 17 17 C 1.39725 * 120.17029 * 322.15377 * 16 14 5 18 18 C 1.37841 * 119.87306 * 179.97438 * 17 16 14 19 19 C 1.38474 * 120.22054 * 359.97438 * 18 17 16 20 20 C 1.50701 * 119.82046 * 179.97438 * 19 18 17 21 21 C 1.38221 * 120.35329 * 359.72482 * 19 18 17 22 22 C 1.38300 * 120.11998 * 0.55376 * 21 19 18 23 23 F 1.35099 * 120.11207 * 179.72085 * 22 21 19 24 24 H 1.08996 * 109.46647 * 59.99917 * 1 2 3 25 25 H 1.08996 * 109.46866 * 180.02562 * 1 2 3 26 26 H 1.08998 * 109.46794 * 300.00342 * 1 2 3 27 27 H 1.09005 * 109.46583 * 59.99519 * 3 2 1 28 28 H 1.09005 * 109.46881 * 300.00126 * 3 2 1 29 29 H 1.09003 * 109.47177 * 305.00073 * 4 3 2 30 30 H 1.08999 * 109.46955 * 184.99867 * 4 3 2 31 31 H 0.96998 * 119.99347 * 179.97438 * 9 8 6 32 32 H 1.07999 * 120.06734 * 359.97438 * 17 16 14 33 33 H 1.07998 * 119.89224 * 180.02562 * 18 17 16 34 34 H 1.09004 * 109.47285 * 90.00286 * 20 19 18 35 35 H 1.09009 * 109.47008 * 209.99685 * 20 19 18 36 36 H 1.08999 * 109.47553 * 329.99666 * 20 19 18 37 37 H 1.07998 * 119.94363 * 180.30647 * 21 19 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0103 1.3054 0.0000 4 6 3.5355 1.1846 0.0006 5 7 3.9767 0.5639 -1.2510 6 6 4.2529 -0.7763 -1.2901 7 1 4.0050 -1.3533 -2.1687 8 6 4.8526 -1.3947 -0.1987 9 7 5.5463 -0.6828 0.6603 10 14 4.6720 -3.2377 0.0461 11 1 5.7820 -3.9402 -0.6466 12 1 4.7168 -3.5511 1.4969 13 1 3.3737 -3.6871 -0.5175 14 6 4.1106 1.3123 -2.3637 15 8 3.9667 2.5185 -2.3062 16 6 4.4320 0.6682 -3.6520 17 6 5.3187 -0.4107 -3.6958 18 6 5.6141 -1.0081 -4.9024 19 6 5.0346 -0.5429 -6.0708 20 6 5.3644 -1.2024 -7.3851 21 6 4.1514 0.5198 -6.0375 22 6 3.8493 1.1336 -4.8355 23 9 2.9903 2.1759 -4.8038 24 1 -0.3632 0.5138 -0.8900 25 1 -0.3633 -1.0276 0.0005 26 1 -0.3633 0.5139 0.8900 27 1 1.6886 1.8463 0.8900 28 1 1.6887 1.8464 -0.8900 29 1 3.8508 0.5684 0.8427 30 1 3.9785 2.1764 0.0902 31 1 5.9644 -1.1142 1.4219 32 1 5.7718 -0.7760 -2.7860 33 1 6.2991 -1.8424 -4.9365 34 1 4.6594 -2.0124 -7.5723 35 1 5.2952 -0.4679 -8.1877 36 1 6.3771 -1.6037 -7.3463 37 1 3.6995 0.8741 -6.9521 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000317190552.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:19:33 Heat of formation + Delta-G solvation = -91.967185 kcal Electronic energy + Delta-G solvation = -22701.420408 eV Core-core repulsion = 19165.897713 eV Total energy + Delta-G solvation = -3535.522695 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 281.121 amu Computer time = 0.46 seconds Orbital eigenvalues (eV) -48.22644 -39.28384 -37.92194 -36.85905 -34.77138 -32.41940 -31.67202 -30.12566 -29.26442 -26.98867 -25.81333 -24.80214 -22.63535 -22.12665 -21.12779 -19.28071 -17.78555 -16.36090 -16.27402 -15.79254 -15.50631 -15.27559 -15.00986 -14.76527 -14.37665 -14.20244 -13.84062 -13.43527 -13.40208 -13.20109 -12.90325 -12.67993 -12.05946 -11.83852 -11.65686 -11.41156 -11.28435 -11.24377 -11.08797 -10.98726 -10.78176 -10.50582 -10.38777 -10.06554 -9.18316 -8.98961 -8.56278 -8.32888 -8.06839 -7.55067 -6.43197 -4.02820 1.45438 1.75585 3.11660 3.22975 3.30328 3.69626 4.09062 4.29296 4.46588 4.63159 4.76784 5.01489 5.13054 5.23698 5.55264 5.59295 5.64838 5.67596 5.71796 5.80445 5.87123 5.97694 6.02265 6.05190 6.15403 6.29019 6.44293 6.56472 6.59228 6.74187 6.95596 6.99629 7.19184 7.37494 7.45587 7.75816 7.93437 8.32160 9.02976 9.43236 9.86061 10.59950 Molecular weight = 281.12amu Principal moments of inertia in cm(-1) A = 0.014133 B = 0.007653 C = 0.005933 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1980.720488 B = 3657.908091 C = 4718.265767 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.031 3.969 2 O -0.367 6.367 3 C 0.050 3.950 4 C 0.120 3.880 5 N -0.416 5.416 6 C -0.331 4.331 7 H 0.093 0.907 8 C 0.049 3.951 9 N -0.855 5.855 10 Si 0.910 3.090 11 H -0.277 1.277 12 H -0.282 1.282 13 H -0.267 1.267 14 C 0.504 3.496 15 O -0.597 6.597 16 C -0.131 4.131 17 C -0.037 4.037 18 C -0.153 4.153 19 C -0.059 4.059 20 C -0.111 4.111 21 C -0.178 4.178 22 C 0.134 3.866 23 F -0.132 7.132 24 H 0.032 0.968 25 H 0.078 0.922 26 H 0.031 0.969 27 H 0.042 0.958 28 H 0.042 0.958 29 H 0.111 0.889 30 H 0.073 0.927 31 H 0.271 0.729 32 H 0.167 0.833 33 H 0.125 0.875 34 H 0.070 0.930 35 H 0.064 0.936 36 H 0.067 0.933 37 H 0.128 0.872 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.612 -2.996 -7.108 8.144 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.066 4.066 2 O -0.285 6.285 3 C -0.028 4.028 4 C -0.004 4.004 5 N -0.132 5.132 6 C -0.458 4.458 7 H 0.111 0.889 8 C -0.157 4.157 9 N -0.491 5.491 10 Si 0.736 3.264 11 H -0.203 1.203 12 H -0.207 1.207 13 H -0.191 1.191 14 C 0.293 3.707 15 O -0.484 6.484 16 C -0.135 4.135 17 C -0.056 4.056 18 C -0.171 4.171 19 C -0.060 4.060 20 C -0.167 4.167 21 C -0.196 4.196 22 C 0.113 3.887 23 F -0.110 7.110 24 H 0.051 0.949 25 H 0.096 0.904 26 H 0.049 0.951 27 H 0.060 0.940 28 H 0.061 0.939 29 H 0.129 0.871 30 H 0.091 0.909 31 H 0.081 0.919 32 H 0.184 0.816 33 H 0.143 0.857 34 H 0.088 0.912 35 H 0.083 0.917 36 H 0.086 0.914 37 H 0.146 0.854 Dipole moment (debyes) X Y Z Total from point charges -2.500 -2.562 -6.829 7.710 hybrid contribution -0.604 -0.534 0.281 0.854 sum -3.104 -3.096 -6.547 7.880 Atomic orbital electron populations 1.22646 0.83272 1.01770 0.98922 1.88110 1.17544 1.27758 1.95077 1.23059 0.96399 0.84379 0.98931 1.21419 0.89187 0.99261 0.90535 1.43163 1.55203 1.08124 1.06717 1.19414 1.39022 0.83052 1.04339 0.88917 1.25265 0.93997 0.99897 0.96586 1.69947 1.27766 1.37178 1.14242 0.86203 0.79115 0.83141 0.77892 1.20302 1.20734 1.19116 1.18016 0.81907 0.86094 0.84684 1.90647 1.57180 1.13952 1.86581 1.20157 1.01002 0.99011 0.93311 1.22045 0.93185 0.91140 0.99200 1.21063 1.02376 1.01804 0.91840 1.19749 0.95648 0.94873 0.95713 1.20776 1.01902 1.00294 0.93771 1.20729 1.03042 0.99539 0.96334 1.17760 0.90971 0.86316 0.93635 1.91493 1.67213 1.55038 1.97244 0.94927 0.90386 0.95085 0.94018 0.93923 0.87071 0.90896 0.91880 0.81619 0.85677 0.91161 0.91728 0.91396 0.85394 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.51 11.01 101.05 1.11 1.62 16 2 O -0.37 -7.89 10.56 -35.23 -0.37 -8.26 16 3 C 0.05 1.06 6.21 37.16 0.23 1.29 16 4 C 0.12 2.87 5.27 -4.04 -0.02 2.85 16 5 N -0.42 -10.57 2.49 -115.97 -0.29 -10.86 16 6 C -0.33 -8.22 6.37 -15.00 -0.10 -8.31 16 7 H 0.09 2.26 6.08 -52.48 -0.32 1.94 16 8 C 0.05 1.20 4.85 -17.45 -0.08 1.12 16 9 N -0.86 -21.86 11.59 55.50 0.64 -21.21 16 10 Si 0.91 19.28 29.61 -169.99 -5.03 14.25 16 11 H -0.28 -5.69 7.11 56.52 0.40 -5.29 16 12 H -0.28 -6.01 7.11 56.52 0.40 -5.61 16 13 H -0.27 -5.73 7.11 56.52 0.40 -5.32 16 14 C 0.50 12.99 7.12 -12.45 -0.09 12.91 16 15 O -0.60 -16.69 15.87 5.27 0.08 -16.61 16 16 C -0.13 -2.95 5.41 -104.92 -0.57 -3.52 16 17 C -0.04 -0.74 7.65 -39.17 -0.30 -1.04 16 18 C -0.15 -2.47 9.67 -39.64 -0.38 -2.85 16 19 C -0.06 -0.88 5.88 -104.54 -0.62 -1.50 16 20 C -0.11 -1.18 10.00 36.01 0.36 -0.82 16 21 C -0.18 -2.94 9.66 -39.56 -0.38 -3.32 16 22 C 0.13 2.76 7.24 -38.94 -0.28 2.48 16 23 F -0.13 -2.90 16.19 2.25 0.04 -2.86 16 24 H 0.03 0.51 8.14 -51.93 -0.42 0.08 16 25 H 0.08 1.13 8.14 -51.93 -0.42 0.71 16 26 H 0.03 0.44 8.14 -51.93 -0.42 0.01 16 27 H 0.04 0.76 8.14 -51.93 -0.42 0.34 16 28 H 0.04 0.95 8.12 -51.93 -0.42 0.52 16 29 H 0.11 2.80 5.62 -51.93 -0.29 2.51 16 30 H 0.07 1.77 7.59 -51.93 -0.39 1.37 16 31 H 0.27 6.55 8.31 -40.82 -0.34 6.21 16 32 H 0.17 3.53 5.86 -52.49 -0.31 3.23 16 33 H 0.13 1.67 8.06 -52.49 -0.42 1.25 16 34 H 0.07 0.67 8.14 -51.93 -0.42 0.25 16 35 H 0.06 0.61 8.08 -51.92 -0.42 0.19 16 36 H 0.07 0.63 8.08 -51.93 -0.42 0.22 16 37 H 0.13 1.77 8.06 -52.49 -0.42 1.34 16 LS Contribution 318.56 15.07 4.80 4.80 Total: -1.00 -29.99 318.56 -5.91 -35.91 By element: Atomic # 1 Polarization: 8.62 SS G_CDS: -4.67 Total: 3.95 kcal Atomic # 6 Polarization: 2.01 SS G_CDS: -1.12 Total: 0.90 kcal Atomic # 7 Polarization: -32.43 SS G_CDS: 0.35 Total: -32.08 kcal Atomic # 8 Polarization: -24.58 SS G_CDS: -0.29 Total: -24.87 kcal Atomic # 9 Polarization: -2.90 SS G_CDS: 0.04 Total: -2.86 kcal Atomic # 14 Polarization: 19.28 SS G_CDS: -5.03 Total: 14.25 kcal Total LS contribution 4.80 Total: 4.80 kcal Total: -29.99 -5.91 -35.91 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000317190552.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -56.059 kcal (2) G-P(sol) polarization free energy of solvation -29.994 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -86.053 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -5.914 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -35.908 kcal (6) G-S(sol) free energy of system = (1) + (5) -91.967 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.46 seconds