Wall clock time and date at job start Tue Mar 31 2020 05:19:33 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42902 * 1 3 3 C 1.42902 * 114.00427 * 2 1 4 4 C 1.52995 * 109.47324 * 179.97438 * 3 2 1 5 5 N 1.46505 * 109.46929 * 65.00321 * 4 3 2 6 6 C 1.36891 * 119.99544 * 262.12830 * 5 4 3 7 7 H 1.08003 * 120.00161 * 143.42113 * 6 5 4 8 8 C 1.39040 * 120.00224 * 323.41415 * 6 5 4 9 9 N 1.31376 * 119.99833 * 337.45816 * 8 6 5 10 10 Si 1.86796 * 119.99934 * 157.45509 * 8 6 5 11 11 H 1.48504 * 109.46919 * 90.00273 * 10 8 6 12 12 H 1.48494 * 109.47172 * 210.00246 * 10 8 6 13 13 H 1.48498 * 109.47386 * 330.00332 * 10 8 6 14 14 C 1.34771 * 120.00227 * 82.12745 * 5 4 3 15 15 O 1.21607 * 120.00038 * 5.72247 * 14 5 4 16 16 C 1.47579 * 120.00242 * 185.71852 * 14 5 4 17 17 C 1.39725 * 120.17029 * 322.15377 * 16 14 5 18 18 C 1.37841 * 119.87306 * 179.97438 * 17 16 14 19 19 C 1.38474 * 120.22054 * 359.97438 * 18 17 16 20 20 C 1.50701 * 119.82046 * 179.97438 * 19 18 17 21 21 C 1.38221 * 120.35329 * 359.72482 * 19 18 17 22 22 C 1.38300 * 120.11998 * 0.55376 * 21 19 18 23 23 F 1.35099 * 120.11207 * 179.72085 * 22 21 19 24 24 H 1.08996 * 109.46647 * 59.99917 * 1 2 3 25 25 H 1.08996 * 109.46866 * 180.02562 * 1 2 3 26 26 H 1.08998 * 109.46794 * 300.00342 * 1 2 3 27 27 H 1.09005 * 109.46583 * 59.99519 * 3 2 1 28 28 H 1.09005 * 109.46881 * 300.00126 * 3 2 1 29 29 H 1.09003 * 109.47177 * 305.00073 * 4 3 2 30 30 H 1.08999 * 109.46955 * 184.99867 * 4 3 2 31 31 H 0.96998 * 119.99347 * 179.97438 * 9 8 6 32 32 H 1.07999 * 120.06734 * 359.97438 * 17 16 14 33 33 H 1.07998 * 119.89224 * 180.02562 * 18 17 16 34 34 H 1.09004 * 109.47285 * 90.00286 * 20 19 18 35 35 H 1.09009 * 109.47008 * 209.99685 * 20 19 18 36 36 H 1.08999 * 109.47553 * 329.99666 * 20 19 18 37 37 H 1.07998 * 119.94363 * 180.30647 * 21 19 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0103 1.3054 0.0000 4 6 3.5355 1.1846 0.0006 5 7 3.9767 0.5639 -1.2510 6 6 4.2529 -0.7763 -1.2901 7 1 4.0050 -1.3533 -2.1687 8 6 4.8526 -1.3947 -0.1987 9 7 5.5463 -0.6828 0.6603 10 14 4.6720 -3.2377 0.0461 11 1 5.7820 -3.9402 -0.6466 12 1 4.7168 -3.5511 1.4969 13 1 3.3737 -3.6871 -0.5175 14 6 4.1106 1.3123 -2.3637 15 8 3.9667 2.5185 -2.3062 16 6 4.4320 0.6682 -3.6520 17 6 5.3187 -0.4107 -3.6958 18 6 5.6141 -1.0081 -4.9024 19 6 5.0346 -0.5429 -6.0708 20 6 5.3644 -1.2024 -7.3851 21 6 4.1514 0.5198 -6.0375 22 6 3.8493 1.1336 -4.8355 23 9 2.9903 2.1759 -4.8038 24 1 -0.3632 0.5138 -0.8900 25 1 -0.3633 -1.0276 0.0005 26 1 -0.3633 0.5139 0.8900 27 1 1.6886 1.8463 0.8900 28 1 1.6887 1.8464 -0.8900 29 1 3.8508 0.5684 0.8427 30 1 3.9785 2.1764 0.0902 31 1 5.9644 -1.1142 1.4219 32 1 5.7718 -0.7760 -2.7860 33 1 6.2991 -1.8424 -4.9365 34 1 4.6594 -2.0124 -7.5723 35 1 5.2952 -0.4679 -8.1877 36 1 6.3771 -1.6037 -7.3463 37 1 3.6995 0.8741 -6.9521 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000317190552.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:19:33 Heat of formation + Delta-G solvation = -110.200156 kcal Electronic energy + Delta-G solvation = -22702.211049 eV Core-core repulsion = 19165.897713 eV Total energy + Delta-G solvation = -3536.313336 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 281.121 amu Computer time = 0.48 seconds Orbital eigenvalues (eV) -49.84668 -41.00863 -39.47044 -38.51154 -36.70756 -33.79212 -33.57618 -31.55224 -30.92310 -28.27104 -27.34367 -26.58124 -24.28019 -23.56042 -22.66959 -21.11959 -19.55754 -18.07950 -17.77042 -17.41499 -17.17995 -16.85485 -16.69070 -16.45888 -16.07686 -15.85195 -15.40378 -15.03726 -14.85433 -14.36852 -14.31697 -14.20083 -13.70778 -13.35934 -13.11528 -12.94702 -12.86231 -12.67630 -12.62638 -12.53019 -12.34413 -12.13771 -11.98503 -11.81437 -11.05622 -10.61270 -10.45258 -9.77909 -9.57971 -9.43368 -8.31814 -5.97441 -0.01843 0.33635 1.43135 1.51074 1.62529 1.98330 2.31839 2.68614 2.84129 2.93874 3.19781 3.32047 3.86083 3.98748 4.12125 4.18201 4.30271 4.40122 4.41814 4.47422 4.53476 4.55754 4.70593 4.74541 4.79226 4.93383 4.96513 5.16595 5.22570 5.26482 5.33778 5.46729 5.52142 5.61144 5.91082 6.02667 6.32441 6.40196 7.10452 7.49620 7.93659 8.72967 Molecular weight = 281.12amu Principal moments of inertia in cm(-1) A = 0.014133 B = 0.007653 C = 0.005933 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1980.720488 B = 3657.908091 C = 4718.265767 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.025 3.975 2 O -0.397 6.397 3 C 0.063 3.937 4 C 0.117 3.883 5 N -0.423 5.423 6 C -0.338 4.338 7 H 0.095 0.905 8 C 0.014 3.986 9 N -0.887 5.887 10 Si 0.974 3.026 11 H -0.261 1.261 12 H -0.283 1.283 13 H -0.269 1.269 14 C 0.486 3.514 15 O -0.636 6.636 16 C -0.171 4.171 17 C -0.048 4.048 18 C -0.142 4.142 19 C -0.040 4.040 20 C -0.109 4.109 21 C -0.167 4.167 22 C 0.107 3.893 23 F -0.149 7.149 24 H 0.035 0.965 25 H 0.097 0.903 26 H 0.055 0.945 27 H 0.073 0.927 28 H 0.025 0.975 29 H 0.099 0.901 30 H 0.057 0.943 31 H 0.274 0.726 32 H 0.145 0.855 33 H 0.161 0.839 34 H 0.089 0.911 35 H 0.082 0.918 36 H 0.087 0.913 37 H 0.161 0.839 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.653 -5.543 -9.298 11.146 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.071 4.071 2 O -0.316 6.316 3 C -0.014 4.014 4 C -0.007 4.007 5 N -0.138 5.138 6 C -0.465 4.465 7 H 0.112 0.888 8 C -0.190 4.190 9 N -0.524 5.524 10 Si 0.798 3.202 11 H -0.186 1.186 12 H -0.209 1.209 13 H -0.193 1.193 14 C 0.277 3.723 15 O -0.526 6.526 16 C -0.174 4.174 17 C -0.067 4.067 18 C -0.160 4.160 19 C -0.041 4.041 20 C -0.165 4.165 21 C -0.186 4.186 22 C 0.087 3.913 23 F -0.128 7.128 24 H 0.054 0.946 25 H 0.115 0.885 26 H 0.074 0.926 27 H 0.091 0.909 28 H 0.043 0.957 29 H 0.117 0.883 30 H 0.075 0.925 31 H 0.084 0.916 32 H 0.163 0.837 33 H 0.179 0.821 34 H 0.108 0.892 35 H 0.101 0.899 36 H 0.106 0.894 37 H 0.178 0.822 Dipole moment (debyes) X Y Z Total from point charges -2.544 -5.126 -9.024 10.685 hybrid contribution -0.578 0.245 0.885 1.085 sum -3.122 -4.881 -8.139 9.990 Atomic orbital electron populations 1.22904 0.80473 1.03513 1.00247 1.88039 1.20639 1.27591 1.95321 1.22814 0.94378 0.84757 0.99485 1.21389 0.91396 0.97959 0.89938 1.43393 1.54889 1.08533 1.06983 1.19566 1.39337 0.82789 1.04817 0.88793 1.26010 0.93247 1.03779 0.95950 1.70035 1.28605 1.38936 1.14813 0.85231 0.79209 0.78183 0.77613 1.18600 1.20854 1.19329 1.18691 0.81513 0.85929 0.86167 1.90579 1.59099 1.15505 1.87453 1.20081 1.03848 1.01135 0.92364 1.21858 0.93371 0.91210 1.00266 1.21435 1.02089 1.01808 0.90660 1.20320 0.93043 0.93254 0.97438 1.20911 1.03503 1.00979 0.91116 1.21132 1.02623 0.99126 0.95684 1.18160 0.91677 0.86794 0.94686 1.91438 1.67918 1.56035 1.97383 0.94632 0.88484 0.92650 0.90941 0.95650 0.88310 0.92493 0.91646 0.83744 0.82135 0.89214 0.89884 0.89429 0.82171 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.02 0.78 11.01 113.37 1.25 2.03 16 2 O -0.40 -17.17 10.56 -148.98 -1.57 -18.75 16 3 C 0.06 2.76 6.21 71.98 0.45 3.21 16 4 C 0.12 5.91 5.27 86.38 0.46 6.37 16 5 N -0.42 -22.59 2.49 -639.09 -1.59 -24.18 16 6 C -0.34 -17.28 6.37 84.10 0.54 -16.74 16 7 H 0.09 4.69 6.08 -2.91 -0.02 4.68 16 8 C 0.01 0.68 4.85 84.95 0.41 1.10 16 9 N -0.89 -46.55 11.59 21.68 0.25 -46.30 16 10 Si 0.97 39.35 29.61 68.60 2.03 41.38 16 11 H -0.26 -9.82 7.11 99.48 0.71 -9.12 16 12 H -0.28 -11.42 7.11 99.48 0.71 -10.71 16 13 H -0.27 -10.87 7.11 99.48 0.71 -10.17 16 14 C 0.49 26.58 7.12 86.71 0.62 27.20 16 15 O -0.64 -38.02 15.87 -4.05 -0.06 -38.09 16 16 C -0.17 -7.96 5.41 -20.05 -0.11 -8.07 16 17 C -0.05 -1.94 7.65 22.54 0.17 -1.77 16 18 C -0.14 -4.20 9.67 22.23 0.22 -3.99 16 19 C -0.04 -1.04 5.88 -19.81 -0.12 -1.15 16 20 C -0.11 -1.67 10.00 71.24 0.71 -0.96 16 21 C -0.17 -5.12 9.66 22.28 0.22 -4.91 16 22 C 0.11 4.48 7.24 22.68 0.16 4.64 16 23 F -0.15 -6.82 16.19 44.97 0.73 -6.09 16 24 H 0.04 1.08 8.14 -2.39 -0.02 1.06 16 25 H 0.10 2.64 8.14 -2.39 -0.02 2.62 16 26 H 0.05 1.46 8.14 -2.39 -0.02 1.44 16 27 H 0.07 2.66 8.14 -2.38 -0.02 2.64 16 28 H 0.03 1.18 8.12 -2.38 -0.02 1.16 16 29 H 0.10 5.21 5.62 -2.39 -0.01 5.20 16 30 H 0.06 2.97 7.59 -2.39 -0.02 2.95 16 31 H 0.27 13.48 8.31 -92.71 -0.77 12.71 16 32 H 0.15 6.35 5.86 -2.91 -0.02 6.33 16 33 H 0.16 3.59 8.06 -2.91 -0.02 3.56 16 34 H 0.09 1.16 8.14 -2.38 -0.02 1.14 16 35 H 0.08 1.05 8.08 -2.38 -0.02 1.03 16 36 H 0.09 1.09 8.08 -2.39 -0.02 1.07 16 37 H 0.16 3.82 8.06 -2.91 -0.02 3.80 16 Total: -1.00 -69.50 318.56 5.83 -63.66 By element: Atomic # 1 Polarization: 20.33 SS G_CDS: 1.08 Total: 21.41 kcal Atomic # 6 Polarization: 1.99 SS G_CDS: 4.97 Total: 6.96 kcal Atomic # 7 Polarization: -69.14 SS G_CDS: -1.34 Total: -70.48 kcal Atomic # 8 Polarization: -55.20 SS G_CDS: -1.64 Total: -56.83 kcal Atomic # 9 Polarization: -6.82 SS G_CDS: 0.73 Total: -6.09 kcal Atomic # 14 Polarization: 39.35 SS G_CDS: 2.03 Total: 41.38 kcal Total: -69.50 5.83 -63.66 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000317190552.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -46.539 kcal (2) G-P(sol) polarization free energy of solvation -69.496 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -116.035 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.835 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -63.661 kcal (6) G-S(sol) free energy of system = (1) + (5) -110.200 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.48 seconds