Wall clock time and date at job start Tue Mar 31 2020 05:19:39 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42897 * 1 3 3 C 1.42901 * 113.99915 * 2 1 4 4 C 1.52995 * 109.47281 * 179.97438 * 3 2 1 5 5 N 1.46496 * 109.47259 * 64.99654 * 4 3 2 6 6 C 1.36895 * 120.00227 * 264.44118 * 5 4 3 7 7 H 1.08005 * 120.00072 * 130.62543 * 6 5 4 8 8 C 1.39035 * 120.00077 * 310.62585 * 6 5 4 9 9 N 1.31373 * 119.99626 * 350.86396 * 8 6 5 10 10 Si 1.86797 * 120.00243 * 170.86929 * 8 6 5 11 11 H 1.48501 * 109.46984 * 359.97438 * 10 8 6 12 12 H 1.48496 * 109.47507 * 119.99688 * 10 8 6 13 13 H 1.48500 * 109.46913 * 240.00025 * 10 8 6 14 14 C 1.34785 * 120.00034 * 84.44316 * 5 4 3 15 15 O 1.21608 * 119.99456 * 2.73268 * 14 5 4 16 16 C 1.47580 * 120.00146 * 182.73457 * 14 5 4 17 17 C 1.39729 * 120.17032 * 308.52610 * 16 14 5 18 18 C 1.37842 * 119.87138 * 180.22813 * 17 16 14 19 19 C 1.38476 * 120.21880 * 359.49968 * 18 17 16 20 20 C 1.38221 * 120.35277 * 0.22608 * 19 18 17 21 21 C 1.50700 * 119.93527 * 180.02562 * 20 19 18 22 22 C 1.38298 * 120.12504 * 0.02669 * 20 19 18 23 23 F 1.35104 * 120.11048 * 180.02562 * 22 20 19 24 24 H 1.09010 * 109.47196 * 179.97438 * 1 2 3 25 25 H 1.08991 * 109.47506 * 300.00381 * 1 2 3 26 26 H 1.09001 * 109.46902 * 60.00577 * 1 2 3 27 27 H 1.08994 * 109.47197 * 59.99678 * 3 2 1 28 28 H 1.09003 * 109.46635 * 299.99829 * 3 2 1 29 29 H 1.09003 * 109.46954 * 305.00267 * 4 3 2 30 30 H 1.08997 * 109.47211 * 185.00107 * 4 3 2 31 31 H 0.97012 * 119.99657 * 180.02562 * 9 8 6 32 32 H 1.08004 * 120.06713 * 359.97438 * 17 16 14 33 33 H 1.07992 * 119.88816 * 179.77202 * 18 17 16 34 34 H 1.07999 * 119.82083 * 180.25985 * 19 18 17 35 35 H 1.09000 * 109.47406 * 90.00577 * 21 20 19 36 36 H 1.09005 * 109.46960 * 210.00564 * 21 20 19 37 37 H 1.09003 * 109.47378 * 329.99786 * 21 20 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0102 1.3055 0.0000 4 6 3.5354 1.1847 0.0006 5 7 3.9766 0.5640 -1.2508 6 6 4.2074 -0.7844 -1.3019 7 1 3.7742 -1.3767 -2.0943 8 6 4.9995 -1.3913 -0.3337 9 7 5.6709 -0.6546 0.5220 10 14 5.1090 -3.2542 -0.2498 11 1 4.2640 -3.8483 -1.3167 12 1 6.5196 -3.6763 -0.4425 13 1 4.6300 -3.7189 1.0768 14 6 4.1555 1.3205 -2.3519 15 8 3.9986 2.5250 -2.2940 16 6 4.5415 0.6871 -3.6277 17 6 5.6357 -0.1805 -3.6782 18 6 5.9936 -0.7651 -4.8741 19 6 5.2663 -0.5035 -6.0231 20 6 4.1788 0.3487 -5.9824 21 6 3.3936 0.6263 -7.2383 22 6 3.8101 0.9472 -4.7914 23 9 2.7468 1.7797 -4.7519 24 1 -0.3634 -1.0278 -0.0005 25 1 -0.3634 0.5138 0.8899 26 1 -0.3633 0.5138 -0.8901 27 1 1.6885 1.8464 0.8899 28 1 1.6885 1.8463 -0.8900 29 1 3.8507 0.5686 0.8427 30 1 3.9783 2.1766 0.0902 31 1 6.2238 -1.0781 1.1973 32 1 6.2024 -0.3894 -2.7828 33 1 6.8415 -1.4327 -4.9142 34 1 5.5499 -0.9683 -6.9557 35 1 2.5884 -0.1024 -7.3320 36 1 2.9713 1.6300 -7.1884 37 1 4.0531 0.5523 -8.1031 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000317203917.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:19:39 Heat of formation + Delta-G solvation = -98.326368 kcal Electronic energy + Delta-G solvation = -22811.618738 eV Core-core repulsion = 19275.820288 eV Total energy + Delta-G solvation = -3535.798450 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 281.121 amu Computer time = 0.44 seconds Orbital eigenvalues (eV) -48.28834 -39.19837 -37.87583 -36.85178 -34.69525 -32.50132 -31.64098 -30.37040 -28.92756 -26.58519 -25.80947 -24.85362 -23.42474 -21.51265 -21.23190 -19.21924 -17.51853 -16.76014 -16.17137 -15.95031 -15.46961 -15.29564 -15.07863 -14.70372 -14.38083 -14.22653 -13.98455 -13.31132 -13.17768 -13.13309 -12.72591 -12.67795 -12.11082 -11.98615 -11.64070 -11.34708 -11.31638 -11.21438 -11.06659 -11.01048 -10.77048 -10.62973 -10.33126 -10.09581 -9.15049 -8.98782 -8.61751 -8.26081 -8.12237 -7.41949 -6.35370 -4.14996 1.53013 1.70591 3.13451 3.23797 3.28214 3.71439 4.11055 4.20294 4.47850 4.65669 4.82235 5.00767 5.08014 5.26835 5.49406 5.62893 5.67190 5.73213 5.73566 5.84147 5.91266 5.99075 6.01523 6.06586 6.20407 6.30122 6.40219 6.54717 6.61901 6.73979 6.90652 6.95905 7.20657 7.38720 7.47285 7.82500 8.01993 8.37990 9.06926 9.41598 9.87763 10.68664 Molecular weight = 281.12amu Principal moments of inertia in cm(-1) A = 0.013822 B = 0.008068 C = 0.006165 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2025.242710 B = 3469.547117 C = 4540.639929 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.031 3.969 2 O -0.366 6.366 3 C 0.050 3.950 4 C 0.123 3.877 5 N -0.419 5.419 6 C -0.320 4.320 7 H 0.083 0.917 8 C 0.050 3.950 9 N -0.868 5.868 10 Si 0.914 3.086 11 H -0.267 1.267 12 H -0.281 1.281 13 H -0.280 1.280 14 C 0.515 3.485 15 O -0.594 6.594 16 C -0.111 4.111 17 C -0.034 4.034 18 C -0.145 4.145 19 C -0.092 4.092 20 C -0.142 4.142 21 C -0.106 4.106 22 C 0.124 3.876 23 F -0.133 7.133 24 H 0.078 0.922 25 H 0.030 0.970 26 H 0.032 0.968 27 H 0.041 0.959 28 H 0.042 0.958 29 H 0.106 0.894 30 H 0.072 0.928 31 H 0.269 0.731 32 H 0.148 0.852 33 H 0.126 0.874 34 H 0.124 0.876 35 H 0.068 0.932 36 H 0.065 0.935 37 H 0.067 0.933 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.861 -1.910 -7.276 8.048 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.066 4.066 2 O -0.284 6.284 3 C -0.028 4.028 4 C 0.000 4.000 5 N -0.136 5.136 6 C -0.449 4.449 7 H 0.101 0.899 8 C -0.156 4.156 9 N -0.504 5.504 10 Si 0.740 3.260 11 H -0.191 1.191 12 H -0.207 1.207 13 H -0.205 1.205 14 C 0.304 3.696 15 O -0.480 6.480 16 C -0.115 4.115 17 C -0.052 4.052 18 C -0.163 4.163 19 C -0.110 4.110 20 C -0.143 4.143 21 C -0.163 4.163 22 C 0.104 3.896 23 F -0.112 7.112 24 H 0.096 0.904 25 H 0.049 0.951 26 H 0.050 0.950 27 H 0.059 0.941 28 H 0.060 0.940 29 H 0.124 0.876 30 H 0.090 0.910 31 H 0.079 0.921 32 H 0.165 0.835 33 H 0.144 0.856 34 H 0.142 0.858 35 H 0.086 0.914 36 H 0.084 0.916 37 H 0.086 0.914 Dipole moment (debyes) X Y Z Total from point charges -2.752 -1.486 -7.017 7.683 hybrid contribution -0.404 -0.688 0.290 0.849 sum -3.156 -2.174 -6.727 7.742 Atomic orbital electron populations 1.22645 0.83332 1.01754 0.98887 1.88117 1.17479 1.27750 1.95063 1.23065 0.96511 0.84359 0.98830 1.21377 0.89054 0.99030 0.90552 1.43105 1.56097 1.07379 1.07028 1.19271 1.29325 0.82134 1.14139 0.89920 1.25479 0.94119 0.99714 0.96330 1.69856 1.26791 1.35774 1.17956 0.86065 0.77954 0.83274 0.78664 1.19087 1.20686 1.20538 1.18243 0.80622 0.86013 0.84758 1.90648 1.56959 1.14315 1.86084 1.20088 0.97810 1.00153 0.93431 1.21410 0.94377 0.91191 0.98254 1.21104 1.00923 1.01781 0.92530 1.20852 0.94385 0.97185 0.98566 1.19688 0.99413 1.01056 0.94126 1.20634 0.99329 1.02285 0.94050 1.17558 0.86316 0.92287 0.93461 1.91462 1.53462 1.69193 1.97060 0.90394 0.95105 0.94974 0.94100 0.93998 0.87634 0.90999 0.92065 0.83468 0.85607 0.85762 0.91360 0.91564 0.91421 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.51 11.01 101.05 1.11 1.62 16 2 O -0.37 -7.90 10.44 -35.23 -0.37 -8.27 16 3 C 0.05 1.06 6.24 37.16 0.23 1.29 16 4 C 0.12 2.97 5.25 -4.05 -0.02 2.95 16 5 N -0.42 -10.71 2.40 -115.98 -0.28 -10.98 16 6 C -0.32 -8.10 6.34 -15.00 -0.10 -8.19 16 7 H 0.08 2.12 7.51 -52.48 -0.39 1.73 16 8 C 0.05 1.23 5.11 -17.45 -0.09 1.14 16 9 N -0.87 -22.42 11.71 55.50 0.65 -21.77 16 10 Si 0.91 19.54 29.56 -169.99 -5.03 14.52 16 11 H -0.27 -5.66 7.11 56.52 0.40 -5.26 16 12 H -0.28 -5.89 7.11 56.52 0.40 -5.49 16 13 H -0.28 -6.06 7.11 56.52 0.40 -5.66 16 14 C 0.52 13.28 6.88 -12.45 -0.09 13.19 16 15 O -0.59 -16.54 16.42 5.27 0.09 -16.45 16 16 C -0.11 -2.50 5.04 -104.91 -0.53 -3.03 16 17 C -0.03 -0.67 8.30 -39.17 -0.33 -1.00 16 18 C -0.15 -2.32 10.03 -39.64 -0.40 -2.72 16 19 C -0.09 -1.35 9.69 -39.50 -0.38 -1.73 16 20 C -0.14 -2.34 5.88 -104.61 -0.62 -2.96 16 21 C -0.11 -1.36 9.83 36.01 0.35 -1.01 16 22 C 0.12 2.56 7.20 -38.94 -0.28 2.28 16 23 F -0.13 -2.90 15.80 2.25 0.04 -2.86 16 24 H 0.08 1.13 8.14 -51.92 -0.42 0.70 16 25 H 0.03 0.44 8.14 -51.93 -0.42 0.01 16 26 H 0.03 0.50 8.14 -51.93 -0.42 0.08 16 27 H 0.04 0.75 8.14 -51.93 -0.42 0.33 16 28 H 0.04 0.93 8.14 -51.93 -0.42 0.51 16 29 H 0.11 2.68 6.11 -51.93 -0.32 2.36 16 30 H 0.07 1.74 7.56 -51.93 -0.39 1.35 16 31 H 0.27 6.58 8.31 -40.81 -0.34 6.24 16 32 H 0.15 3.13 7.21 -52.48 -0.38 2.75 16 33 H 0.13 1.64 8.06 -52.49 -0.42 1.21 16 34 H 0.12 1.39 8.06 -52.49 -0.42 0.96 16 35 H 0.07 0.80 8.14 -51.93 -0.42 0.38 16 36 H 0.07 0.87 7.64 -51.93 -0.40 0.47 16 37 H 0.07 0.70 8.08 -51.93 -0.42 0.28 16 LS Contribution 321.83 15.07 4.85 4.85 Total: -1.00 -30.19 321.83 -5.99 -36.18 By element: Atomic # 1 Polarization: 7.78 SS G_CDS: -4.82 Total: 2.97 kcal Atomic # 6 Polarization: 2.95 SS G_CDS: -1.12 Total: 1.83 kcal Atomic # 7 Polarization: -33.13 SS G_CDS: 0.37 Total: -32.75 kcal Atomic # 8 Polarization: -24.44 SS G_CDS: -0.28 Total: -24.72 kcal Atomic # 9 Polarization: -2.90 SS G_CDS: 0.04 Total: -2.86 kcal Atomic # 14 Polarization: 19.54 SS G_CDS: -5.03 Total: 14.52 kcal Total LS contribution 4.85 Total: 4.85 kcal Total: -30.19 -5.99 -36.18 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000317203917.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -62.148 kcal (2) G-P(sol) polarization free energy of solvation -30.191 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -92.339 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -5.987 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.178 kcal (6) G-S(sol) free energy of system = (1) + (5) -98.326 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.44 seconds