Wall clock time and date at job start Tue Mar 31 2020 05:19:38 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42897 * 1 3 3 C 1.42901 * 113.99915 * 2 1 4 4 C 1.52995 * 109.47281 * 179.97438 * 3 2 1 5 5 N 1.46496 * 109.47259 * 64.99654 * 4 3 2 6 6 C 1.36895 * 120.00227 * 264.44118 * 5 4 3 7 7 H 1.08005 * 120.00072 * 130.62543 * 6 5 4 8 8 C 1.39035 * 120.00077 * 310.62585 * 6 5 4 9 9 N 1.31373 * 119.99626 * 350.86396 * 8 6 5 10 10 Si 1.86797 * 120.00243 * 170.86929 * 8 6 5 11 11 H 1.48501 * 109.46984 * 359.97438 * 10 8 6 12 12 H 1.48496 * 109.47507 * 119.99688 * 10 8 6 13 13 H 1.48500 * 109.46913 * 240.00025 * 10 8 6 14 14 C 1.34785 * 120.00034 * 84.44316 * 5 4 3 15 15 O 1.21608 * 119.99456 * 2.73268 * 14 5 4 16 16 C 1.47580 * 120.00146 * 182.73457 * 14 5 4 17 17 C 1.39729 * 120.17032 * 308.52610 * 16 14 5 18 18 C 1.37842 * 119.87138 * 180.22813 * 17 16 14 19 19 C 1.38476 * 120.21880 * 359.49968 * 18 17 16 20 20 C 1.38221 * 120.35277 * 0.22608 * 19 18 17 21 21 C 1.50700 * 119.93527 * 180.02562 * 20 19 18 22 22 C 1.38298 * 120.12504 * 0.02669 * 20 19 18 23 23 F 1.35104 * 120.11048 * 180.02562 * 22 20 19 24 24 H 1.09010 * 109.47196 * 179.97438 * 1 2 3 25 25 H 1.08991 * 109.47506 * 300.00381 * 1 2 3 26 26 H 1.09001 * 109.46902 * 60.00577 * 1 2 3 27 27 H 1.08994 * 109.47197 * 59.99678 * 3 2 1 28 28 H 1.09003 * 109.46635 * 299.99829 * 3 2 1 29 29 H 1.09003 * 109.46954 * 305.00267 * 4 3 2 30 30 H 1.08997 * 109.47211 * 185.00107 * 4 3 2 31 31 H 0.97012 * 119.99657 * 180.02562 * 9 8 6 32 32 H 1.08004 * 120.06713 * 359.97438 * 17 16 14 33 33 H 1.07992 * 119.88816 * 179.77202 * 18 17 16 34 34 H 1.07999 * 119.82083 * 180.25985 * 19 18 17 35 35 H 1.09000 * 109.47406 * 90.00577 * 21 20 19 36 36 H 1.09005 * 109.46960 * 210.00564 * 21 20 19 37 37 H 1.09003 * 109.47378 * 329.99786 * 21 20 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0102 1.3055 0.0000 4 6 3.5354 1.1847 0.0006 5 7 3.9766 0.5640 -1.2508 6 6 4.2074 -0.7844 -1.3019 7 1 3.7742 -1.3767 -2.0943 8 6 4.9995 -1.3913 -0.3337 9 7 5.6709 -0.6546 0.5220 10 14 5.1090 -3.2542 -0.2498 11 1 4.2640 -3.8483 -1.3167 12 1 6.5196 -3.6763 -0.4425 13 1 4.6300 -3.7189 1.0768 14 6 4.1555 1.3205 -2.3519 15 8 3.9986 2.5250 -2.2940 16 6 4.5415 0.6871 -3.6277 17 6 5.6357 -0.1805 -3.6782 18 6 5.9936 -0.7651 -4.8741 19 6 5.2663 -0.5035 -6.0231 20 6 4.1788 0.3487 -5.9824 21 6 3.3936 0.6263 -7.2383 22 6 3.8101 0.9472 -4.7914 23 9 2.7468 1.7797 -4.7519 24 1 -0.3634 -1.0278 -0.0005 25 1 -0.3634 0.5138 0.8899 26 1 -0.3633 0.5138 -0.8901 27 1 1.6885 1.8464 0.8899 28 1 1.6885 1.8463 -0.8900 29 1 3.8507 0.5686 0.8427 30 1 3.9783 2.1766 0.0902 31 1 6.2238 -1.0781 1.1973 32 1 6.2024 -0.3894 -2.7828 33 1 6.8415 -1.4327 -4.9142 34 1 5.5499 -0.9683 -6.9557 35 1 2.5884 -0.1024 -7.3320 36 1 2.9713 1.6300 -7.1884 37 1 4.0531 0.5523 -8.1031 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000317203917.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:19:38 Heat of formation + Delta-G solvation = -116.730397 kcal Electronic energy + Delta-G solvation = -22812.416796 eV Core-core repulsion = 19275.820288 eV Total energy + Delta-G solvation = -3536.596508 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 281.121 amu Computer time = 0.45 seconds Orbital eigenvalues (eV) -49.87734 -40.94401 -39.42052 -38.51569 -36.65301 -33.84131 -33.58363 -31.86532 -30.60972 -27.80676 -27.29975 -26.74158 -25.04940 -23.20294 -22.60832 -21.09741 -19.27562 -18.26183 -17.94641 -17.54625 -17.15109 -16.92576 -16.67356 -16.39926 -16.09566 -15.84038 -15.52153 -15.02708 -14.79503 -14.24995 -14.24365 -14.11628 -13.67786 -13.41582 -13.26151 -12.97430 -12.88149 -12.74033 -12.67726 -12.52912 -12.50411 -12.08781 -11.99591 -11.86561 -11.05647 -10.63686 -10.49145 -9.72293 -9.54397 -9.38329 -8.27170 -6.13354 0.07154 0.31617 1.43071 1.48640 1.60494 1.94160 2.31875 2.66372 2.86782 2.96487 3.14772 3.33867 3.84470 3.95157 4.14933 4.18312 4.29943 4.39957 4.42485 4.46004 4.53019 4.54965 4.67569 4.75684 4.80433 4.82217 4.93530 5.07812 5.22855 5.27355 5.35080 5.47461 5.48475 5.54289 6.01114 6.02420 6.33494 6.41133 7.11297 7.45612 7.93207 8.78092 Molecular weight = 281.12amu Principal moments of inertia in cm(-1) A = 0.013822 B = 0.008068 C = 0.006165 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2025.242710 B = 3469.547117 C = 4540.639929 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.025 3.975 2 O -0.397 6.397 3 C 0.063 3.937 4 C 0.121 3.879 5 N -0.426 5.426 6 C -0.324 4.324 7 H 0.075 0.925 8 C 0.014 3.986 9 N -0.897 5.897 10 Si 0.978 3.022 11 H -0.262 1.262 12 H -0.270 1.270 13 H -0.282 1.282 14 C 0.499 3.501 15 O -0.633 6.633 16 C -0.149 4.149 17 C -0.052 4.052 18 C -0.130 4.130 19 C -0.071 4.071 20 C -0.133 4.133 21 C -0.106 4.106 22 C 0.092 3.908 23 F -0.151 7.151 24 H 0.097 0.903 25 H 0.055 0.945 26 H 0.034 0.966 27 H 0.073 0.927 28 H 0.025 0.975 29 H 0.091 0.909 30 H 0.057 0.943 31 H 0.272 0.728 32 H 0.123 0.877 33 H 0.165 0.835 34 H 0.179 0.821 35 H 0.082 0.918 36 H 0.055 0.945 37 H 0.104 0.896 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.707 -4.348 -9.583 10.866 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.071 4.071 2 O -0.316 6.316 3 C -0.014 4.014 4 C -0.002 4.002 5 N -0.142 5.142 6 C -0.453 4.453 7 H 0.093 0.907 8 C -0.189 4.189 9 N -0.534 5.534 10 Si 0.802 3.198 11 H -0.185 1.185 12 H -0.195 1.195 13 H -0.207 1.207 14 C 0.290 3.710 15 O -0.522 6.522 16 C -0.152 4.152 17 C -0.070 4.070 18 C -0.148 4.148 19 C -0.089 4.089 20 C -0.134 4.134 21 C -0.162 4.162 22 C 0.072 3.928 23 F -0.129 7.129 24 H 0.115 0.885 25 H 0.074 0.926 26 H 0.053 0.947 27 H 0.090 0.910 28 H 0.043 0.957 29 H 0.109 0.891 30 H 0.076 0.924 31 H 0.082 0.918 32 H 0.141 0.859 33 H 0.182 0.818 34 H 0.197 0.803 35 H 0.101 0.899 36 H 0.074 0.926 37 H 0.123 0.877 Dipole moment (debyes) X Y Z Total from point charges -2.608 -3.932 -9.326 10.451 hybrid contribution -0.457 0.072 0.956 1.063 sum -3.066 -3.860 -8.369 9.713 Atomic orbital electron populations 1.22902 0.80492 1.03521 1.00207 1.88046 1.20623 1.27620 1.95312 1.22822 0.94456 0.84732 0.99431 1.21335 0.91299 0.97744 0.89862 1.43322 1.55823 1.07715 1.07346 1.19256 1.29750 0.81907 1.14343 0.90699 1.26199 0.93346 1.03790 0.95567 1.69956 1.27375 1.37569 1.18512 0.85101 0.78394 0.77959 0.78388 1.18546 1.19490 1.20748 1.18919 0.80107 0.85827 0.86194 1.90580 1.58788 1.15842 1.86965 1.20018 1.00131 1.02556 0.92545 1.21284 0.94062 0.92266 0.99432 1.21520 1.01503 1.00575 0.91159 1.21455 0.92252 0.95174 1.00028 1.20210 0.99758 0.99678 0.93748 1.20756 1.00041 1.02141 0.93249 1.17980 0.86606 0.93613 0.94616 1.91405 1.54315 1.70002 1.97215 0.88462 0.92643 0.94702 0.90951 0.95695 0.89090 0.92441 0.91794 0.85887 0.81790 0.80330 0.89906 0.92554 0.87738 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.02 0.79 11.01 113.37 1.25 2.04 16 2 O -0.40 -17.32 10.44 -148.98 -1.56 -18.87 16 3 C 0.06 2.77 6.24 71.98 0.45 3.22 16 4 C 0.12 6.16 5.25 86.38 0.45 6.62 16 5 N -0.43 -22.94 2.40 -639.09 -1.53 -24.47 16 6 C -0.32 -16.94 6.34 84.09 0.53 -16.41 16 7 H 0.08 3.96 7.51 -2.91 -0.02 3.94 16 8 C 0.01 0.71 5.11 84.95 0.43 1.14 16 9 N -0.90 -47.67 11.71 21.68 0.25 -47.42 16 10 Si 0.98 39.91 29.56 68.60 2.03 41.94 16 11 H -0.26 -10.37 7.11 99.48 0.71 -9.66 16 12 H -0.27 -10.47 7.11 99.48 0.71 -9.76 16 13 H -0.28 -11.54 7.11 99.48 0.71 -10.84 16 14 C 0.50 27.36 6.88 86.71 0.60 27.96 16 15 O -0.63 -37.73 16.42 -4.06 -0.07 -37.80 16 16 C -0.15 -6.96 5.04 -20.05 -0.10 -7.06 16 17 C -0.05 -2.07 8.30 22.54 0.19 -1.89 16 18 C -0.13 -3.74 10.03 22.23 0.22 -3.52 16 19 C -0.07 -1.76 9.69 22.32 0.22 -1.55 16 20 C -0.13 -4.05 5.88 -19.85 -0.12 -4.16 16 21 C -0.11 -2.32 9.83 71.24 0.70 -1.62 16 22 C 0.09 3.84 7.20 22.68 0.16 4.00 16 23 F -0.15 -6.82 15.80 44.97 0.71 -6.11 16 24 H 0.10 2.66 8.14 -2.38 -0.02 2.64 16 25 H 0.06 1.47 8.14 -2.39 -0.02 1.45 16 26 H 0.03 1.07 8.14 -2.39 -0.02 1.05 16 27 H 0.07 2.67 8.14 -2.39 -0.02 2.65 16 28 H 0.02 1.16 8.14 -2.39 -0.02 1.14 16 29 H 0.09 4.85 6.11 -2.39 -0.01 4.84 16 30 H 0.06 3.00 7.56 -2.39 -0.02 2.98 16 31 H 0.27 13.58 8.31 -92.70 -0.77 12.81 16 32 H 0.12 5.45 7.21 -2.91 -0.02 5.43 16 33 H 0.16 3.46 8.06 -2.91 -0.02 3.44 16 34 H 0.18 2.59 8.06 -2.91 -0.02 2.57 16 35 H 0.08 1.63 8.14 -2.39 -0.02 1.61 16 36 H 0.06 1.37 7.64 -2.38 -0.02 1.35 16 37 H 0.10 1.56 8.08 -2.39 -0.02 1.54 16 Total: -1.00 -70.70 321.83 5.90 -64.80 By element: Atomic # 1 Polarization: 18.09 SS G_CDS: 1.07 Total: 19.17 kcal Atomic # 6 Polarization: 3.78 SS G_CDS: 4.99 Total: 8.77 kcal Atomic # 7 Polarization: -70.61 SS G_CDS: -1.28 Total: -71.89 kcal Atomic # 8 Polarization: -55.05 SS G_CDS: -1.62 Total: -56.67 kcal Atomic # 9 Polarization: -6.82 SS G_CDS: 0.71 Total: -6.11 kcal Atomic # 14 Polarization: 39.91 SS G_CDS: 2.03 Total: 41.94 kcal Total: -70.70 5.90 -64.80 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000317203917.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -51.931 kcal (2) G-P(sol) polarization free energy of solvation -70.698 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -122.629 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.899 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -64.799 kcal (6) G-S(sol) free energy of system = (1) + (5) -116.730 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.45 seconds