Wall clock time and date at job start Tue Mar 31 2020 05:18:44 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50703 * 1 3 3 C 1.38381 * 119.92643 * 2 1 4 4 C 1.38345 * 120.30010 * 180.02562 * 3 2 1 5 5 C 1.37978 * 120.14490 * 359.69777 * 4 3 2 6 6 C 1.39582 * 119.84668 * 0.53133 * 5 4 3 7 7 C 1.47798 * 120.14535 * 179.76639 * 6 5 4 8 8 O 1.21561 * 119.99951 * 179.72944 * 7 6 5 9 9 N 1.34773 * 119.99749 * 359.72365 * 7 6 5 10 10 C 1.39012 * 119.99954 * 184.38242 * 9 7 6 11 11 C 1.38687 * 120.28683 * 325.33850 * 10 9 7 12 12 C 1.38201 * 120.02790 * 180.28098 * 11 10 9 13 13 C 1.38878 * 120.62461 * 359.73879 * 12 11 10 14 14 C 1.36462 * 120.58086 * 359.97438 * 13 12 11 15 15 C 1.40736 * 119.94410 * 0.02562 * 14 13 12 16 16 C 1.41057 * 120.30090 * 179.97438 * 15 14 13 17 17 H 1.07993 * 120.00301 * 154.82705 * 16 15 14 18 18 C 1.39965 * 119.99904 * 334.82203 * 16 15 14 19 19 N 1.30853 * 120.00164 * 334.81756 * 18 16 15 20 20 Si 1.86801 * 119.99944 * 154.81114 * 18 16 15 21 21 H 1.48500 * 109.47047 * 180.02562 * 20 18 16 22 22 H 1.48497 * 109.47331 * 300.00419 * 20 18 16 23 23 H 1.48503 * 109.47039 * 60.00333 * 20 18 16 24 24 C 1.37926 * 119.92435 * 179.97438 * 2 1 3 25 25 H 1.09003 * 109.46412 * 270.01507 * 1 2 3 26 26 H 1.08995 * 109.47251 * 30.01434 * 1 2 3 27 27 H 1.08998 * 109.47112 * 150.02494 * 1 2 3 28 28 H 1.08001 * 119.85464 * 0.02562 * 3 2 1 29 29 H 1.08002 * 119.92928 * 179.97438 * 4 3 2 30 30 H 1.07995 * 120.07254 * 180.28207 * 5 4 3 31 31 H 0.97005 * 120.00210 * 4.38944 * 9 7 6 32 32 H 1.07997 * 119.98598 * 359.97438 * 11 10 9 33 33 H 1.08004 * 119.68400 * 179.76301 * 12 11 10 34 34 H 1.07993 * 119.71090 * 179.97438 * 13 12 11 35 35 H 1.07998 * 120.02586 * 180.02562 * 14 13 12 36 36 H 0.96994 * 119.99593 * 354.62200 * 19 18 16 37 37 H 1.07995 * 120.07802 * 0.02562 * 24 2 1 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.1974 1.1993 0.0000 4 6 3.5808 1.2083 -0.0005 5 6 4.2815 0.0197 0.0052 6 6 3.5913 -1.1935 0.0004 7 6 4.3353 -2.4706 0.0013 8 8 3.7315 -3.5257 0.0020 9 7 5.6830 -2.4654 0.0012 10 6 6.3827 -3.6631 -0.0900 11 6 5.8839 -4.8117 0.5061 12 6 6.5869 -5.9982 0.4171 13 6 7.7919 -6.0567 -0.2708 14 6 8.3030 -4.9433 -0.8717 15 6 7.6073 -3.7222 -0.7963 16 6 8.1290 -2.5665 -1.4142 17 1 7.4658 -1.7694 -1.7160 18 6 9.5062 -2.4527 -1.6361 19 7 10.3472 -3.1143 -0.8828 20 14 10.1439 -1.3566 -3.0077 21 1 11.6277 -1.4095 -3.0343 22 1 9.6087 -1.8304 -4.3093 23 1 9.7021 0.0412 -2.7701 24 6 2.1951 -1.1954 0.0005 25 1 -0.3632 0.0003 1.0277 26 1 -0.3633 0.8898 -0.5140 27 1 -0.3633 -0.8902 -0.5134 28 1 1.6538 2.1326 0.0004 29 1 4.1136 2.1478 -0.0009 30 1 5.3614 0.0281 0.0094 31 1 6.1648 -1.6258 0.0648 32 1 4.9482 -4.7777 1.0443 33 1 6.1951 -6.8885 0.8867 34 1 8.3291 -6.9916 -0.3308 35 1 9.2406 -4.9990 -1.4047 36 1 10.0219 -3.6213 -0.1226 37 1 1.6551 -2.1307 0.0005 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000336326086.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:18:44 Heat of formation + Delta-G solvation = -3.106286 kcal Electronic energy + Delta-G solvation = -20752.607043 eV Core-core repulsion = 17651.706870 eV Total energy + Delta-G solvation = -3100.900172 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 281.116 amu Computer time = 0.53 seconds Orbital eigenvalues (eV) -40.11909 -38.68596 -37.21967 -34.07117 -33.90533 -32.79685 -31.11590 -29.37395 -28.55117 -26.91321 -25.19043 -23.87690 -21.80547 -21.43456 -20.84003 -19.30095 -18.12415 -17.40031 -16.21569 -15.99518 -15.07058 -14.80014 -14.61109 -14.56734 -14.16135 -13.83550 -13.69009 -13.34938 -13.04429 -12.71706 -12.34709 -12.27743 -12.05444 -11.97967 -11.52646 -11.47025 -11.09725 -11.03724 -10.70845 -10.45982 -10.34049 -9.72064 -9.38773 -9.09868 -8.93815 -8.89097 -8.74933 -7.63904 -7.41158 -6.97922 -4.50290 0.93222 1.33792 2.61368 2.79167 3.10321 3.21342 3.27521 3.31232 3.80878 3.94668 4.05143 4.52339 4.71688 4.79878 4.92163 5.16147 5.24733 5.32198 5.44470 5.46143 5.60693 5.66700 5.91623 6.00820 6.19374 6.30708 6.36484 6.38146 6.46125 6.50372 6.80902 6.89514 6.93410 7.12772 7.36592 7.51081 7.69895 7.74644 7.90048 8.00152 8.20085 8.32495 8.64458 8.74971 8.93604 9.97332 Molecular weight = 281.12amu Principal moments of inertia in cm(-1) A = 0.016557 B = 0.005196 C = 0.004083 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1690.699810 B = 5387.346725 C = 6855.838515 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.112 4.112 2 C -0.099 4.099 3 C -0.104 4.104 4 C -0.123 4.123 5 C -0.094 4.094 6 C -0.117 4.117 7 C 0.538 3.462 8 O -0.539 6.539 9 N -0.628 5.628 10 C 0.003 3.997 11 C -0.071 4.071 12 C -0.240 4.240 13 C -0.091 4.091 14 C -0.208 4.208 15 C 0.092 3.908 16 C -0.526 4.526 17 H 0.074 0.926 18 C 0.041 3.959 19 N -0.793 5.793 20 Si 1.063 2.937 21 H -0.273 1.273 22 H -0.275 1.275 23 H -0.276 1.276 24 C -0.065 4.065 25 H 0.070 0.930 26 H 0.066 0.934 27 H 0.068 0.932 28 H 0.123 0.877 29 H 0.127 0.873 30 H 0.129 0.871 31 H 0.402 0.598 32 H 0.111 0.889 33 H 0.092 0.908 34 H 0.091 0.909 35 H 0.109 0.891 36 H 0.301 0.699 37 H 0.134 0.866 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -10.538 9.429 1.290 14.199 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.169 4.169 2 C -0.099 4.099 3 C -0.122 4.122 4 C -0.141 4.141 5 C -0.112 4.112 6 C -0.120 4.120 7 C 0.326 3.674 8 O -0.418 6.418 9 N -0.270 5.270 10 C -0.090 4.090 11 C -0.091 4.091 12 C -0.260 4.260 13 C -0.110 4.110 14 C -0.228 4.228 15 C 0.088 3.912 16 C -0.554 4.554 17 H 0.092 0.908 18 C -0.181 4.181 19 N -0.416 5.416 20 Si 0.887 3.113 21 H -0.198 1.198 22 H -0.200 1.200 23 H -0.201 1.201 24 C -0.084 4.084 25 H 0.088 0.912 26 H 0.085 0.915 27 H 0.087 0.913 28 H 0.141 0.859 29 H 0.145 0.855 30 H 0.146 0.854 31 H 0.238 0.762 32 H 0.129 0.871 33 H 0.111 0.889 34 H 0.109 0.891 35 H 0.127 0.873 36 H 0.114 0.886 37 H 0.152 0.848 Dipole moment (debyes) X Y Z Total from point charges -9.524 9.172 0.550 13.234 hybrid contribution -1.073 -0.132 0.759 1.321 sum -10.597 9.040 1.309 13.990 Atomic orbital electron populations 1.20779 0.90886 1.02860 1.02372 1.19874 0.96289 0.92859 1.00874 1.21180 0.94291 0.97469 0.99285 1.21074 0.94201 0.97971 1.00860 1.21422 1.00212 0.91845 0.97767 1.20101 0.94379 0.93261 1.04301 1.18288 0.82477 0.88609 0.78049 1.90707 1.68484 1.32144 1.50451 1.42739 1.05044 1.09464 1.69705 1.17593 0.98398 0.85651 1.07394 1.20717 0.98493 0.92194 0.97714 1.20264 0.98388 0.96993 1.10384 1.20407 0.95500 0.97009 0.98053 1.20753 1.02794 0.92300 1.06931 1.17482 0.91046 0.93401 0.89288 1.20335 0.95120 1.03642 1.36266 0.90794 1.26973 0.93447 0.97745 0.99957 1.70467 1.39393 1.20278 1.11490 0.83654 0.76932 0.75548 0.75173 1.19801 1.20001 1.20140 1.21153 0.92714 0.98277 0.96215 0.91152 0.91538 0.91341 0.85894 0.85469 0.85365 0.76182 0.87089 0.88950 0.89127 0.87307 0.88559 0.84788 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.11 -0.98 10.01 36.01 0.36 -0.62 16 2 C -0.10 -1.17 5.87 -104.68 -0.61 -1.78 16 3 C -0.10 -1.12 9.69 -39.49 -0.38 -1.50 16 4 C -0.12 -1.41 10.03 -39.64 -0.40 -1.81 16 5 C -0.09 -1.30 9.54 -39.18 -0.37 -1.68 16 6 C -0.12 -1.93 5.87 -104.97 -0.62 -2.54 16 7 C 0.54 11.02 7.61 -12.35 -0.09 10.92 16 8 O -0.54 -12.56 13.76 5.31 0.07 -12.49 16 9 N -0.63 -13.35 4.84 -10.34 -0.05 -13.40 16 10 C 0.00 0.08 6.33 -83.20 -0.53 -0.45 16 11 C -0.07 -1.74 8.69 -39.43 -0.34 -2.08 16 12 C -0.24 -5.62 10.04 -39.36 -0.39 -6.02 16 13 C -0.09 -2.14 9.97 -39.99 -0.40 -2.53 16 14 C -0.21 -5.28 7.88 -39.28 -0.31 -5.59 16 15 C 0.09 2.38 5.32 -106.65 -0.57 1.81 16 16 C -0.53 -13.16 8.35 -37.87 -0.32 -13.48 16 17 H 0.07 1.77 7.39 -52.49 -0.39 1.39 16 18 C 0.04 1.00 4.95 -17.32 -0.09 0.91 16 19 N -0.79 -20.20 12.32 55.55 0.68 -19.52 16 20 Si 1.06 20.69 30.00 -169.99 -5.10 15.59 16 21 H -0.27 -5.32 7.11 56.52 0.40 -4.92 16 22 H -0.27 -5.27 7.11 56.52 0.40 -4.87 16 23 H -0.28 -5.02 7.11 56.52 0.40 -4.61 16 24 C -0.06 -0.95 9.24 -39.18 -0.36 -1.31 16 25 H 0.07 0.55 8.14 -51.93 -0.42 0.12 16 26 H 0.07 0.47 8.08 -51.93 -0.42 0.05 16 27 H 0.07 0.58 8.08 -51.93 -0.42 0.16 16 28 H 0.12 0.98 8.06 -52.49 -0.42 0.55 16 29 H 0.13 1.13 8.06 -52.49 -0.42 0.70 16 30 H 0.13 1.67 6.41 -52.49 -0.34 1.34 16 31 H 0.40 7.67 6.00 -40.82 -0.24 7.43 16 32 H 0.11 2.69 6.19 -52.49 -0.33 2.36 16 33 H 0.09 1.93 8.06 -52.48 -0.42 1.51 16 34 H 0.09 1.88 8.06 -52.49 -0.42 1.46 16 35 H 0.11 2.81 6.45 -52.49 -0.34 2.47 16 36 H 0.30 7.88 6.62 -40.82 -0.27 7.61 16 37 H 0.13 1.99 7.65 -52.49 -0.40 1.59 16 LS Contribution 314.88 15.07 4.75 4.75 Total: -1.00 -29.34 314.88 -9.12 -38.47 By element: Atomic # 1 Polarization: 18.39 SS G_CDS: -4.05 Total: 14.34 kcal Atomic # 6 Polarization: -22.31 SS G_CDS: -5.42 Total: -27.74 kcal Atomic # 7 Polarization: -33.55 SS G_CDS: 0.63 Total: -32.92 kcal Atomic # 8 Polarization: -12.56 SS G_CDS: 0.07 Total: -12.49 kcal Atomic # 14 Polarization: 20.69 SS G_CDS: -5.10 Total: 15.59 kcal Total LS contribution 4.75 Total: 4.75 kcal Total: -29.34 -9.12 -38.47 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000336326086.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 35.362 kcal (2) G-P(sol) polarization free energy of solvation -29.344 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 6.018 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.124 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.469 kcal (6) G-S(sol) free energy of system = (1) + (5) -3.106 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.53 seconds