Wall clock time and date at job start Tue Mar 31 2020 05:18:43 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50703 * 1 3 3 C 1.38381 * 119.92643 * 2 1 4 4 C 1.38345 * 120.30010 * 180.02562 * 3 2 1 5 5 C 1.37978 * 120.14490 * 359.69777 * 4 3 2 6 6 C 1.39582 * 119.84668 * 0.53133 * 5 4 3 7 7 C 1.47798 * 120.14535 * 179.76639 * 6 5 4 8 8 O 1.21561 * 119.99951 * 179.72944 * 7 6 5 9 9 N 1.34773 * 119.99749 * 359.72365 * 7 6 5 10 10 C 1.39012 * 119.99954 * 184.38242 * 9 7 6 11 11 C 1.38687 * 120.28683 * 325.33850 * 10 9 7 12 12 C 1.38201 * 120.02790 * 180.28098 * 11 10 9 13 13 C 1.38878 * 120.62461 * 359.73879 * 12 11 10 14 14 C 1.36462 * 120.58086 * 359.97438 * 13 12 11 15 15 C 1.40736 * 119.94410 * 0.02562 * 14 13 12 16 16 C 1.41057 * 120.30090 * 179.97438 * 15 14 13 17 17 H 1.07993 * 120.00301 * 154.82705 * 16 15 14 18 18 C 1.39965 * 119.99904 * 334.82203 * 16 15 14 19 19 N 1.30853 * 120.00164 * 334.81756 * 18 16 15 20 20 Si 1.86801 * 119.99944 * 154.81114 * 18 16 15 21 21 H 1.48500 * 109.47047 * 180.02562 * 20 18 16 22 22 H 1.48497 * 109.47331 * 300.00419 * 20 18 16 23 23 H 1.48503 * 109.47039 * 60.00333 * 20 18 16 24 24 C 1.37926 * 119.92435 * 179.97438 * 2 1 3 25 25 H 1.09003 * 109.46412 * 270.01507 * 1 2 3 26 26 H 1.08995 * 109.47251 * 30.01434 * 1 2 3 27 27 H 1.08998 * 109.47112 * 150.02494 * 1 2 3 28 28 H 1.08001 * 119.85464 * 0.02562 * 3 2 1 29 29 H 1.08002 * 119.92928 * 179.97438 * 4 3 2 30 30 H 1.07995 * 120.07254 * 180.28207 * 5 4 3 31 31 H 0.97005 * 120.00210 * 4.38944 * 9 7 6 32 32 H 1.07997 * 119.98598 * 359.97438 * 11 10 9 33 33 H 1.08004 * 119.68400 * 179.76301 * 12 11 10 34 34 H 1.07993 * 119.71090 * 179.97438 * 13 12 11 35 35 H 1.07998 * 120.02586 * 180.02562 * 14 13 12 36 36 H 0.96994 * 119.99593 * 354.62200 * 19 18 16 37 37 H 1.07995 * 120.07802 * 0.02562 * 24 2 1 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.1974 1.1993 0.0000 4 6 3.5808 1.2083 -0.0005 5 6 4.2815 0.0197 0.0052 6 6 3.5913 -1.1935 0.0004 7 6 4.3353 -2.4706 0.0013 8 8 3.7315 -3.5257 0.0020 9 7 5.6830 -2.4654 0.0012 10 6 6.3827 -3.6631 -0.0900 11 6 5.8839 -4.8117 0.5061 12 6 6.5869 -5.9982 0.4171 13 6 7.7919 -6.0567 -0.2708 14 6 8.3030 -4.9433 -0.8717 15 6 7.6073 -3.7222 -0.7963 16 6 8.1290 -2.5665 -1.4142 17 1 7.4658 -1.7694 -1.7160 18 6 9.5062 -2.4527 -1.6361 19 7 10.3472 -3.1143 -0.8828 20 14 10.1439 -1.3566 -3.0077 21 1 11.6277 -1.4095 -3.0343 22 1 9.6087 -1.8304 -4.3093 23 1 9.7021 0.0412 -2.7701 24 6 2.1951 -1.1954 0.0005 25 1 -0.3632 0.0003 1.0277 26 1 -0.3633 0.8898 -0.5140 27 1 -0.3633 -0.8902 -0.5134 28 1 1.6538 2.1326 0.0004 29 1 4.1136 2.1478 -0.0009 30 1 5.3614 0.0281 0.0094 31 1 6.1648 -1.6258 0.0648 32 1 4.9482 -4.7777 1.0443 33 1 6.1951 -6.8885 0.8867 34 1 8.3291 -6.9916 -0.3308 35 1 9.2406 -4.9990 -1.4047 36 1 10.0219 -3.6213 -0.1226 37 1 1.6551 -2.1307 0.0005 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000336326086.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:18:43 Heat of formation + Delta-G solvation = -17.912864 kcal Electronic energy + Delta-G solvation = -20753.249104 eV Core-core repulsion = 17651.706870 eV Total energy + Delta-G solvation = -3101.542234 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 281.116 amu Computer time = 0.56 seconds Orbital eigenvalues (eV) -41.60938 -40.03247 -38.91856 -35.85640 -35.69292 -33.81566 -32.22264 -31.27963 -30.28993 -27.81467 -27.03123 -25.26580 -23.23847 -22.78184 -22.56877 -20.87648 -19.92640 -18.87093 -17.85272 -17.11933 -16.68199 -16.36835 -16.15965 -15.84899 -15.70232 -15.22556 -14.83851 -14.58076 -14.50732 -14.22369 -13.99683 -13.87345 -13.36729 -13.06822 -12.88673 -12.71256 -12.57950 -12.43477 -12.16643 -12.02634 -11.96071 -11.53129 -11.15202 -10.88408 -10.68907 -9.99674 -9.71937 -9.58748 -9.32944 -8.85458 -6.44995 -0.21037 0.35327 0.80278 0.88996 1.52508 1.64525 1.81050 1.86389 2.27438 2.32656 2.66953 2.84287 3.50210 3.67291 3.80757 3.94484 4.14621 4.33547 4.36434 4.37750 4.39165 4.61777 4.70195 4.83309 4.86841 4.92025 4.96602 5.03304 5.25031 5.25130 5.32468 5.39972 5.45132 5.54102 5.65541 5.75099 5.87071 5.94507 5.99175 6.09732 6.30761 6.56314 6.79908 6.87165 7.23909 8.02777 Molecular weight = 281.12amu Principal moments of inertia in cm(-1) A = 0.016557 B = 0.005196 C = 0.004083 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1690.699810 B = 5387.346725 C = 6855.838515 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.112 4.112 2 C -0.097 4.097 3 C -0.090 4.090 4 C -0.117 4.117 5 C -0.102 4.102 6 C -0.146 4.146 7 C 0.536 3.464 8 O -0.576 6.576 9 N -0.629 5.629 10 C -0.005 4.005 11 C -0.088 4.088 12 C -0.240 4.240 13 C -0.094 4.094 14 C -0.226 4.226 15 C 0.066 3.934 16 C -0.544 4.544 17 H 0.078 0.922 18 C 0.009 3.991 19 N -0.811 5.811 20 Si 1.114 2.886 21 H -0.273 1.273 22 H -0.271 1.271 23 H -0.251 1.251 24 C -0.081 4.081 25 H 0.082 0.918 26 H 0.090 0.910 27 H 0.064 0.936 28 H 0.164 0.836 29 H 0.161 0.839 30 H 0.130 0.870 31 H 0.410 0.590 32 H 0.108 0.892 33 H 0.119 0.881 34 H 0.119 0.881 35 H 0.098 0.902 36 H 0.286 0.714 37 H 0.120 0.880 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -11.739 12.224 0.839 16.969 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.168 4.168 2 C -0.097 4.097 3 C -0.107 4.107 4 C -0.135 4.135 5 C -0.120 4.120 6 C -0.149 4.149 7 C 0.327 3.673 8 O -0.458 6.458 9 N -0.271 5.271 10 C -0.100 4.100 11 C -0.109 4.109 12 C -0.260 4.260 13 C -0.112 4.112 14 C -0.246 4.246 15 C 0.062 3.938 16 C -0.571 4.571 17 H 0.096 0.904 18 C -0.208 4.208 19 N -0.434 5.434 20 Si 0.931 3.069 21 H -0.198 1.198 22 H -0.196 1.196 23 H -0.175 1.175 24 C -0.100 4.100 25 H 0.101 0.899 26 H 0.109 0.891 27 H 0.083 0.917 28 H 0.182 0.818 29 H 0.179 0.821 30 H 0.148 0.852 31 H 0.248 0.752 32 H 0.126 0.874 33 H 0.137 0.863 34 H 0.137 0.863 35 H 0.116 0.884 36 H 0.098 0.902 37 H 0.138 0.862 Dipole moment (debyes) X Y Z Total from point charges -10.744 11.982 0.121 16.094 hybrid contribution -0.842 -0.985 0.962 1.614 sum -11.586 10.996 1.083 16.010 Atomic orbital electron populations 1.20857 0.88509 1.03963 1.03477 1.20239 0.98012 0.92074 0.99417 1.21690 0.94194 0.98516 0.96348 1.21477 0.94817 0.98077 0.99138 1.21541 1.00509 0.91942 0.98049 1.19868 0.94901 0.91979 1.08171 1.19002 0.82036 0.89917 0.76393 1.90660 1.69022 1.34010 1.52121 1.42740 1.05506 1.08828 1.70039 1.17820 0.98403 0.86983 1.06747 1.20886 0.98702 0.92928 0.98339 1.20601 0.98086 0.97561 1.09747 1.20681 0.95614 0.97636 0.97292 1.20802 1.02761 0.93108 1.07940 1.17811 0.91852 0.94137 0.90047 1.20523 0.95870 1.03774 1.36983 0.90384 1.28348 0.93432 0.97996 1.01045 1.70575 1.39537 1.21457 1.11812 0.83034 0.76355 0.75126 0.72373 1.19755 1.19565 1.17483 1.21205 0.92121 0.99261 0.97442 0.89935 0.89091 0.91653 0.81841 0.82132 0.85241 0.75236 0.87419 0.86344 0.86314 0.88401 0.90167 0.86242 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.11 -1.59 10.01 71.24 0.71 -0.88 16 2 C -0.10 -2.05 5.87 -19.90 -0.12 -2.17 16 3 C -0.09 -1.54 9.69 22.33 0.22 -1.33 16 4 C -0.12 -2.28 10.03 22.23 0.22 -2.05 16 5 C -0.10 -2.72 9.54 22.53 0.21 -2.50 16 6 C -0.15 -4.87 5.87 -20.09 -0.12 -4.99 16 7 C 0.54 22.88 7.61 86.77 0.66 23.54 16 8 O -0.58 -28.24 13.76 -3.91 -0.05 -28.30 16 9 N -0.63 -27.76 4.84 -304.91 -1.48 -29.24 16 10 C -0.01 -0.26 6.33 38.91 0.25 -0.02 16 11 C -0.09 -4.45 8.69 22.37 0.19 -4.25 16 12 C -0.24 -11.30 10.04 22.41 0.22 -11.08 16 13 C -0.09 -4.43 9.97 22.01 0.22 -4.21 16 14 C -0.23 -11.81 7.88 22.47 0.18 -11.63 16 15 C 0.07 3.50 5.32 -21.18 -0.11 3.39 16 16 C -0.54 -27.77 8.35 23.38 0.20 -27.58 16 17 H 0.08 3.80 7.39 -2.91 -0.02 3.78 16 18 C 0.01 0.45 4.95 85.26 0.42 0.87 16 19 N -0.81 -42.14 12.32 21.83 0.27 -41.87 16 20 Si 1.11 41.03 30.00 68.60 2.06 43.09 16 21 H -0.27 -9.98 7.11 99.48 0.71 -9.27 16 22 H -0.27 -9.74 7.11 99.48 0.71 -9.04 16 23 H -0.25 -8.20 7.11 99.48 0.71 -7.49 16 24 C -0.08 -2.38 9.24 22.53 0.21 -2.17 16 25 H 0.08 1.01 8.14 -2.39 -0.02 1.00 16 26 H 0.09 0.88 8.08 -2.39 -0.02 0.86 16 27 H 0.06 0.99 8.08 -2.39 -0.02 0.97 16 28 H 0.16 1.56 8.06 -2.91 -0.02 1.54 16 29 H 0.16 2.06 8.06 -2.91 -0.02 2.03 16 30 H 0.13 3.32 6.41 -2.91 -0.02 3.30 16 31 H 0.41 16.21 6.00 -92.70 -0.56 15.65 16 32 H 0.11 5.43 6.19 -2.91 -0.02 5.41 16 33 H 0.12 4.85 8.06 -2.91 -0.02 4.83 16 34 H 0.12 4.83 8.06 -2.91 -0.02 4.81 16 35 H 0.10 5.24 6.45 -2.91 -0.02 5.22 16 36 H 0.29 15.54 6.62 -92.71 -0.61 14.93 16 37 H 0.12 3.73 7.65 -2.91 -0.02 3.71 16 Total: -1.00 -66.20 314.88 5.06 -61.14 By element: Atomic # 1 Polarization: 41.53 SS G_CDS: 0.70 Total: 42.23 kcal Atomic # 6 Polarization: -50.63 SS G_CDS: 3.57 Total: -47.06 kcal Atomic # 7 Polarization: -69.90 SS G_CDS: -1.21 Total: -71.11 kcal Atomic # 8 Polarization: -28.24 SS G_CDS: -0.05 Total: -28.30 kcal Atomic # 14 Polarization: 41.03 SS G_CDS: 2.06 Total: 43.09 kcal Total: -66.20 5.06 -61.14 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000336326086.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 43.228 kcal (2) G-P(sol) polarization free energy of solvation -66.204 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -22.977 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.064 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -61.141 kcal (6) G-S(sol) free energy of system = (1) + (5) -17.913 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.56 seconds