Wall clock time and date at job start Tue Mar 31 2020 05:06:57 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31521 * 1 3 3 Si 1.86800 * 119.99723 * 2 1 4 4 H 1.48500 * 109.46799 * 179.97438 * 3 2 1 5 5 H 1.48494 * 109.47140 * 299.99551 * 3 2 1 6 6 H 1.48493 * 109.47173 * 59.99932 * 3 2 1 7 7 C 1.37872 * 119.99911 * 179.97438 * 2 1 3 8 8 H 1.08001 * 119.99959 * 180.02562 * 7 2 1 9 9 C 1.50706 * 120.00211 * 0.02562 * 7 2 1 10 10 C 1.53001 * 109.47126 * 179.97438 * 9 7 2 11 11 N 1.46501 * 109.46894 * 179.97438 * 10 9 7 12 12 C 1.34773 * 119.99906 * 180.02562 * 11 10 9 13 13 O 1.21279 * 119.99826 * 359.97438 * 12 11 10 14 14 C 1.50697 * 119.99927 * 180.02562 * 12 11 10 15 15 C 1.53008 * 109.47139 * 179.97438 * 14 12 11 16 16 O 1.42895 * 109.47006 * 179.97438 * 15 14 12 17 17 C 1.35951 * 116.99758 * 179.97438 * 16 15 14 18 18 C 1.38708 * 120.03040 * 0.28885 * 17 16 15 19 19 C 1.38147 * 119.96935 * 180.25012 * 18 17 16 20 20 C 1.38455 * 120.02958 * 359.46222 * 19 18 17 21 21 F 1.35101 * 119.97206 * 180.29906 * 20 19 18 22 22 C 1.38452 * 120.06193 * 0.28172 * 20 19 18 23 23 C 1.38156 * 120.03063 * 359.97438 * 22 20 19 24 24 H 0.96998 * 119.99719 * 0.02562 * 1 2 3 25 25 H 1.08997 * 109.46908 * 59.99843 * 9 7 2 26 26 H 1.09003 * 109.46764 * 299.99734 * 9 7 2 27 27 H 1.09005 * 109.46654 * 60.00173 * 10 9 7 28 28 H 1.08995 * 109.46895 * 300.00173 * 10 9 7 29 29 H 0.96998 * 119.99698 * 359.97438 * 11 10 9 30 30 H 1.08997 * 109.47470 * 60.00043 * 14 12 11 31 31 H 1.09003 * 109.47335 * 299.99268 * 14 12 11 32 32 H 1.09005 * 109.46539 * 60.00110 * 15 14 12 33 33 H 1.08995 * 109.46786 * 300.00247 * 15 14 12 34 34 H 1.07998 * 120.01328 * 0.02562 * 18 17 16 35 35 H 1.08002 * 119.98838 * 179.74746 * 19 18 17 36 36 H 1.07997 * 119.98751 * 179.97438 * 22 20 19 37 37 H 1.07999 * 120.02057 * 180.02562 * 23 22 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2491 1.6178 0.0000 4 1 3.7091 1.3464 0.0006 5 1 1.8904 2.3964 -1.2125 6 1 1.8904 2.3964 1.2124 7 6 2.0046 -1.1940 0.0005 8 1 3.0846 -1.1940 0.0010 9 6 1.2511 -2.4992 0.0005 10 6 2.2453 -3.6621 0.0005 11 7 1.5128 -4.9308 0.0012 12 6 2.1866 -6.0980 0.0018 13 8 3.3994 -6.0979 0.0014 14 6 1.4331 -7.4030 0.0018 15 6 2.4274 -8.5660 0.0020 16 8 1.7129 -9.8035 0.0026 17 6 2.4533 -10.9437 0.0023 18 6 3.8385 -10.8718 0.0074 19 6 4.5897 -12.0312 0.0018 20 6 3.9605 -13.2645 0.0023 21 9 4.6963 -14.3976 0.0030 22 6 2.5779 -13.3378 0.0026 23 6 1.8242 -12.1799 0.0029 24 1 -0.4850 0.8401 -0.0004 25 1 0.6248 -2.5571 -0.8896 26 1 0.6241 -2.5567 0.8904 27 1 2.8719 -3.6043 0.8906 28 1 2.8719 -3.6043 -0.8894 29 1 0.5428 -4.9307 0.0019 30 1 0.8069 -7.4611 -0.8884 31 1 0.8062 -7.4606 0.8916 32 1 3.0540 -8.5082 0.8921 33 1 3.0541 -8.5083 -0.8879 34 1 4.3296 -9.9100 0.0120 35 1 5.6683 -11.9756 0.0016 36 1 2.0884 -14.3004 0.0026 37 1 0.7457 -12.2372 0.0035 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000342651119.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:06:57 Heat of formation + Delta-G solvation = -113.445494 kcal Electronic energy + Delta-G solvation = -20077.532821 eV Core-core repulsion = 16541.078757 eV Total energy + Delta-G solvation = -3536.454064 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 281.121 amu Computer time = 0.38 seconds Orbital eigenvalues (eV) -49.09863 -40.45983 -39.36271 -37.52684 -35.00745 -32.95259 -32.31774 -31.50459 -29.83468 -29.18503 -25.57849 -24.23054 -23.08184 -22.15180 -21.01868 -20.10318 -18.73548 -17.71657 -16.92946 -16.64053 -16.61811 -16.22938 -15.80984 -15.25703 -15.05992 -14.97496 -14.47992 -14.43677 -13.96200 -13.69015 -13.42316 -13.03900 -12.94066 -12.76631 -12.34925 -11.93493 -11.93281 -11.26249 -11.10575 -11.09344 -10.90970 -10.67294 -10.41107 -9.93024 -9.56533 -9.54807 -9.26543 -8.64394 -8.43540 -8.41627 -6.14171 -4.17251 0.80258 0.88262 2.66445 2.82644 3.23212 3.25183 3.32977 3.37659 3.75574 3.99325 4.32033 4.38044 4.43469 4.59334 4.76007 4.77024 4.94138 5.01569 5.17153 5.23069 5.33372 5.51535 5.53758 5.57450 5.78192 5.79794 5.90669 6.24690 6.26441 6.36246 6.65338 6.78905 7.03621 7.45077 7.54918 7.83076 7.87424 8.21163 8.48604 8.88887 9.48003 10.97389 Molecular weight = 281.12amu Principal moments of inertia in cm(-1) A = 0.062529 B = 0.002101 C = 0.002037 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 447.683110 B =13324.290451 C =13740.921669 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.894 5.894 2 C 0.058 3.942 3 Si 0.897 3.103 4 H -0.271 1.271 5 H -0.283 1.283 6 H -0.283 1.283 7 C -0.522 4.522 8 H 0.060 0.940 9 C 0.012 3.988 10 C 0.121 3.879 11 N -0.718 5.718 12 C 0.511 3.489 13 O -0.554 6.554 14 C -0.142 4.142 15 C 0.074 3.926 16 O -0.314 6.314 17 C 0.128 3.872 18 C -0.180 4.180 19 C -0.111 4.111 20 C 0.054 3.946 21 F -0.143 7.143 22 C -0.114 4.114 23 C -0.126 4.126 24 H 0.262 0.738 25 H 0.023 0.977 26 H 0.023 0.977 27 H 0.057 0.943 28 H 0.057 0.943 29 H 0.400 0.600 30 H 0.104 0.896 31 H 0.104 0.896 32 H 0.074 0.926 33 H 0.074 0.926 34 H 0.143 0.857 35 H 0.138 0.862 36 H 0.141 0.859 37 H 0.142 0.858 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.108 -24.719 0.008 24.809 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.532 5.532 2 C -0.144 4.144 3 Si 0.725 3.275 4 H -0.196 1.196 5 H -0.209 1.209 6 H -0.209 1.209 7 C -0.561 4.561 8 H 0.078 0.922 9 C -0.026 4.026 10 C -0.001 4.001 11 N -0.368 5.368 12 C 0.296 3.704 13 O -0.433 6.433 14 C -0.182 4.182 15 C -0.001 4.001 16 O -0.227 6.227 17 C 0.082 3.918 18 C -0.199 4.199 19 C -0.130 4.130 20 C 0.034 3.966 21 F -0.122 7.122 22 C -0.133 4.133 23 C -0.145 4.145 24 H 0.071 0.929 25 H 0.041 0.959 26 H 0.041 0.959 27 H 0.076 0.924 28 H 0.076 0.924 29 H 0.234 0.766 30 H 0.122 0.878 31 H 0.122 0.878 32 H 0.092 0.908 33 H 0.092 0.908 34 H 0.160 0.840 35 H 0.156 0.844 36 H 0.159 0.841 37 H 0.159 0.841 Dipole moment (debyes) X Y Z Total from point charges 2.650 -24.568 0.008 24.711 hybrid contribution 0.226 0.894 0.000 0.922 sum 2.876 -23.674 0.008 23.848 Atomic orbital electron populations 1.69964 1.06087 1.26830 1.50352 1.25007 0.94917 0.99476 0.94952 0.86447 0.80147 0.83276 0.77647 1.19580 1.20908 1.20913 1.21080 0.93285 0.90350 1.51368 0.92181 1.19339 0.94204 0.91121 0.97924 1.21766 0.96102 0.81363 1.00911 1.46311 1.10727 1.06477 1.73260 1.20165 0.88033 0.85334 0.76896 1.90694 1.13955 1.87907 1.50752 1.21492 0.99320 0.91308 1.06053 1.22518 0.94230 0.80143 1.03232 1.86006 1.35755 1.12704 1.88266 1.19014 0.89922 0.86748 0.96127 1.21276 0.92775 0.99721 1.06082 1.20976 1.01042 0.90560 1.00414 1.17592 0.89392 0.82188 1.07384 1.91488 1.77125 1.49199 1.94386 1.20945 0.91795 0.99423 1.01158 1.20296 1.00886 0.88720 1.04554 0.92854 0.95876 0.95870 0.92434 0.92421 0.76617 0.87777 0.87776 0.90811 0.90798 0.83954 0.84410 0.84116 0.84061 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.89 -25.70 13.29 55.43 0.74 -24.97 16 2 C 0.06 1.61 5.46 -17.82 -0.10 1.51 16 3 Si 0.90 21.07 29.54 -169.99 -5.02 16.05 16 4 H -0.27 -6.27 7.11 56.52 0.40 -5.87 16 5 H -0.28 -6.58 7.11 56.52 0.40 -6.18 16 6 H -0.28 -6.59 7.11 56.52 0.40 -6.18 16 7 C -0.52 -14.20 9.11 -34.44 -0.31 -14.52 16 8 H 0.06 1.61 7.74 -52.49 -0.41 1.20 16 9 C 0.01 0.28 5.09 -27.88 -0.14 0.13 16 10 C 0.12 2.45 5.61 -4.04 -0.02 2.43 16 11 N -0.72 -11.52 5.56 -60.30 -0.33 -11.86 16 12 C 0.51 7.71 7.83 -10.99 -0.09 7.62 16 13 O -0.55 -10.36 15.98 5.56 0.09 -10.27 16 14 C -0.14 -1.48 6.07 -27.88 -0.17 -1.65 16 15 C 0.07 0.78 4.03 37.16 0.15 0.93 16 16 O -0.31 -3.30 10.14 -19.58 -0.20 -3.50 16 17 C 0.13 1.27 6.69 -39.23 -0.26 1.01 16 18 C -0.18 -1.70 9.04 -39.44 -0.36 -2.06 16 19 C -0.11 -1.00 10.02 -39.53 -0.40 -1.39 16 20 C 0.05 0.50 7.30 -39.42 -0.29 0.21 16 21 F -0.14 -1.44 17.27 2.25 0.04 -1.40 16 22 C -0.11 -0.92 10.02 -39.53 -0.40 -1.32 16 23 C -0.13 -1.07 9.99 -39.44 -0.39 -1.46 16 24 H 0.26 7.10 8.31 -40.82 -0.34 6.76 16 25 H 0.02 0.58 8.14 -51.93 -0.42 0.15 16 26 H 0.02 0.58 8.14 -51.93 -0.42 0.15 16 27 H 0.06 1.22 8.14 -51.93 -0.42 0.79 16 28 H 0.06 1.22 8.14 -51.93 -0.42 0.80 16 29 H 0.40 5.43 8.47 -40.82 -0.35 5.09 16 30 H 0.10 0.92 8.14 -51.93 -0.42 0.50 16 31 H 0.10 0.92 8.14 -51.93 -0.42 0.50 16 32 H 0.07 0.80 7.61 -51.93 -0.40 0.40 16 33 H 0.07 0.80 7.63 -51.93 -0.40 0.40 16 34 H 0.14 1.26 6.30 -52.49 -0.33 0.93 16 35 H 0.14 1.00 8.06 -52.49 -0.42 0.58 16 36 H 0.14 0.81 8.06 -52.49 -0.42 0.39 16 37 H 0.14 0.95 8.06 -52.49 -0.42 0.52 16 LS Contribution 328.41 15.07 4.95 4.95 Total: -1.00 -31.27 328.41 -7.33 -38.60 By element: Atomic # 1 Polarization: 5.75 SS G_CDS: -4.81 Total: 0.93 kcal Atomic # 6 Polarization: -5.77 SS G_CDS: -2.77 Total: -8.54 kcal Atomic # 7 Polarization: -37.23 SS G_CDS: 0.40 Total: -36.82 kcal Atomic # 8 Polarization: -13.66 SS G_CDS: -0.11 Total: -13.77 kcal Atomic # 9 Polarization: -1.44 SS G_CDS: 0.04 Total: -1.40 kcal Atomic # 14 Polarization: 21.07 SS G_CDS: -5.02 Total: 16.05 kcal Total LS contribution 4.95 Total: 4.95 kcal Total: -31.27 -7.33 -38.60 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000342651119.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -74.844 kcal (2) G-P(sol) polarization free energy of solvation -31.273 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -106.117 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.329 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.602 kcal (6) G-S(sol) free energy of system = (1) + (5) -113.445 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.38 seconds