Wall clock time and date at job start Tue Mar 31 2020 05:06:56 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31521 * 1 3 3 Si 1.86800 * 119.99723 * 2 1 4 4 H 1.48500 * 109.46799 * 179.97438 * 3 2 1 5 5 H 1.48494 * 109.47140 * 299.99551 * 3 2 1 6 6 H 1.48493 * 109.47173 * 59.99932 * 3 2 1 7 7 C 1.37872 * 119.99911 * 179.97438 * 2 1 3 8 8 H 1.08001 * 119.99959 * 180.02562 * 7 2 1 9 9 C 1.50706 * 120.00211 * 0.02562 * 7 2 1 10 10 C 1.53001 * 109.47126 * 179.97438 * 9 7 2 11 11 N 1.46501 * 109.46894 * 179.97438 * 10 9 7 12 12 C 1.34773 * 119.99906 * 180.02562 * 11 10 9 13 13 O 1.21279 * 119.99826 * 359.97438 * 12 11 10 14 14 C 1.50697 * 119.99927 * 180.02562 * 12 11 10 15 15 C 1.53008 * 109.47139 * 179.97438 * 14 12 11 16 16 O 1.42895 * 109.47006 * 179.97438 * 15 14 12 17 17 C 1.35951 * 116.99758 * 179.97438 * 16 15 14 18 18 C 1.38708 * 120.03040 * 0.28885 * 17 16 15 19 19 C 1.38147 * 119.96935 * 180.25012 * 18 17 16 20 20 C 1.38455 * 120.02958 * 359.46222 * 19 18 17 21 21 F 1.35101 * 119.97206 * 180.29906 * 20 19 18 22 22 C 1.38452 * 120.06193 * 0.28172 * 20 19 18 23 23 C 1.38156 * 120.03063 * 359.97438 * 22 20 19 24 24 H 0.96998 * 119.99719 * 0.02562 * 1 2 3 25 25 H 1.08997 * 109.46908 * 59.99843 * 9 7 2 26 26 H 1.09003 * 109.46764 * 299.99734 * 9 7 2 27 27 H 1.09005 * 109.46654 * 60.00173 * 10 9 7 28 28 H 1.08995 * 109.46895 * 300.00173 * 10 9 7 29 29 H 0.96998 * 119.99698 * 359.97438 * 11 10 9 30 30 H 1.08997 * 109.47470 * 60.00043 * 14 12 11 31 31 H 1.09003 * 109.47335 * 299.99268 * 14 12 11 32 32 H 1.09005 * 109.46539 * 60.00110 * 15 14 12 33 33 H 1.08995 * 109.46786 * 300.00247 * 15 14 12 34 34 H 1.07998 * 120.01328 * 0.02562 * 18 17 16 35 35 H 1.08002 * 119.98838 * 179.74746 * 19 18 17 36 36 H 1.07997 * 119.98751 * 179.97438 * 22 20 19 37 37 H 1.07999 * 120.02057 * 180.02562 * 23 22 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2491 1.6178 0.0000 4 1 3.7091 1.3464 0.0006 5 1 1.8904 2.3964 -1.2125 6 1 1.8904 2.3964 1.2124 7 6 2.0046 -1.1940 0.0005 8 1 3.0846 -1.1940 0.0010 9 6 1.2511 -2.4992 0.0005 10 6 2.2453 -3.6621 0.0005 11 7 1.5128 -4.9308 0.0012 12 6 2.1866 -6.0980 0.0018 13 8 3.3994 -6.0979 0.0014 14 6 1.4331 -7.4030 0.0018 15 6 2.4274 -8.5660 0.0020 16 8 1.7129 -9.8035 0.0026 17 6 2.4533 -10.9437 0.0023 18 6 3.8385 -10.8718 0.0074 19 6 4.5897 -12.0312 0.0018 20 6 3.9605 -13.2645 0.0023 21 9 4.6963 -14.3976 0.0030 22 6 2.5779 -13.3378 0.0026 23 6 1.8242 -12.1799 0.0029 24 1 -0.4850 0.8401 -0.0004 25 1 0.6248 -2.5571 -0.8896 26 1 0.6241 -2.5567 0.8904 27 1 2.8719 -3.6043 0.8906 28 1 2.8719 -3.6043 -0.8894 29 1 0.5428 -4.9307 0.0019 30 1 0.8069 -7.4611 -0.8884 31 1 0.8062 -7.4606 0.8916 32 1 3.0540 -8.5082 0.8921 33 1 3.0541 -8.5083 -0.8879 34 1 4.3296 -9.9100 0.0120 35 1 5.6683 -11.9756 0.0016 36 1 2.0884 -14.3004 0.0026 37 1 0.7457 -12.2372 0.0035 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000342651119.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:06:56 Heat of formation + Delta-G solvation = -132.796793 kcal Electronic energy + Delta-G solvation = -20078.371956 eV Core-core repulsion = 16541.078757 eV Total energy + Delta-G solvation = -3537.293199 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 281.121 amu Computer time = 0.43 seconds Orbital eigenvalues (eV) -49.83476 -41.26395 -40.57187 -38.27709 -36.62778 -34.82831 -33.31559 -32.21606 -31.40687 -30.07463 -27.10811 -25.47453 -23.87111 -23.07997 -22.63300 -21.33337 -19.52306 -18.61206 -18.40386 -17.66705 -17.54755 -17.49286 -16.65834 -16.59468 -16.39722 -16.28341 -15.68019 -15.23713 -15.07807 -14.62226 -14.57128 -14.30493 -13.91541 -13.87133 -13.67517 -13.21347 -12.97239 -12.73165 -12.72849 -12.51541 -12.23877 -11.79950 -11.70084 -11.67540 -11.45182 -10.91668 -10.61375 -10.20249 -10.02868 -9.14550 -8.24804 -6.34902 0.14491 0.17541 1.40590 1.41998 1.54538 1.61086 1.76240 2.38251 2.54878 2.64274 3.10178 3.30991 3.58684 3.75050 3.79586 3.94610 4.02512 4.10874 4.29217 4.39558 4.49287 4.51285 4.59903 4.73880 4.79399 4.86442 4.90726 5.11612 5.13232 5.22217 5.28992 5.49128 5.58843 5.68111 5.78846 6.16025 6.28089 6.59929 6.78908 7.24322 7.34572 8.87045 Molecular weight = 281.12amu Principal moments of inertia in cm(-1) A = 0.062529 B = 0.002101 C = 0.002037 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 447.683110 B =13324.290451 C =13740.921669 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.926 5.926 2 C 0.006 3.994 3 Si 0.964 3.036 4 H -0.266 1.266 5 H -0.277 1.277 6 H -0.277 1.277 7 C -0.546 4.546 8 H 0.058 0.942 9 C 0.021 3.979 10 C 0.140 3.860 11 N -0.715 5.715 12 C 0.512 3.488 13 O -0.591 6.591 14 C -0.128 4.128 15 C 0.077 3.923 16 O -0.315 6.315 17 C 0.110 3.890 18 C -0.189 4.189 19 C -0.117 4.117 20 C 0.039 3.961 21 F -0.149 7.149 22 C -0.109 4.109 23 C -0.125 4.125 24 H 0.266 0.734 25 H 0.010 0.990 26 H 0.010 0.990 27 H 0.047 0.953 28 H 0.047 0.953 29 H 0.414 0.586 30 H 0.128 0.872 31 H 0.128 0.872 32 H 0.068 0.932 33 H 0.068 0.932 34 H 0.143 0.857 35 H 0.150 0.850 36 H 0.165 0.835 37 H 0.161 0.839 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.711 -25.554 0.008 25.612 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.565 5.565 2 C -0.193 4.193 3 Si 0.789 3.211 4 H -0.190 1.190 5 H -0.203 1.203 6 H -0.203 1.203 7 C -0.584 4.584 8 H 0.077 0.923 9 C -0.017 4.017 10 C 0.016 3.984 11 N -0.366 5.366 12 C 0.299 3.701 13 O -0.473 6.473 14 C -0.167 4.167 15 C 0.001 3.999 16 O -0.229 6.229 17 C 0.065 3.935 18 C -0.207 4.207 19 C -0.135 4.135 20 C 0.020 3.980 21 F -0.128 7.128 22 C -0.128 4.128 23 C -0.143 4.143 24 H 0.074 0.926 25 H 0.028 0.972 26 H 0.028 0.972 27 H 0.065 0.935 28 H 0.065 0.935 29 H 0.250 0.750 30 H 0.146 0.854 31 H 0.146 0.854 32 H 0.086 0.914 33 H 0.086 0.914 34 H 0.161 0.839 35 H 0.167 0.833 36 H 0.183 0.817 37 H 0.179 0.821 Dipole moment (debyes) X Y Z Total from point charges 2.233 -25.431 0.008 25.529 hybrid contribution 0.349 1.078 0.000 1.133 sum 2.582 -24.353 0.008 24.490 Atomic orbital electron populations 1.70060 1.07473 1.27918 1.51090 1.25867 0.95813 1.03083 0.94508 0.85406 0.78972 0.78869 0.77862 1.18996 1.20276 1.20287 1.21509 0.93588 0.92005 1.51345 0.92347 1.19152 0.94278 0.91743 0.96486 1.21226 0.95033 0.82272 0.99892 1.46114 1.11343 1.05494 1.73645 1.20898 0.87711 0.86253 0.75202 1.90682 1.15919 1.88484 1.52205 1.21405 0.98899 0.88063 1.08347 1.22411 0.94158 0.80512 1.02786 1.85974 1.35705 1.12661 1.88543 1.19274 0.90208 0.87053 0.96991 1.21343 0.92932 0.99944 1.06509 1.21141 1.01802 0.90429 1.00177 1.17828 0.90088 0.82066 1.08019 1.91472 1.77379 1.49472 1.94510 1.21221 0.91283 1.00444 0.99852 1.20553 1.01945 0.88117 1.03713 0.92556 0.97183 0.97175 0.93487 0.93472 0.75002 0.85377 0.85371 0.91388 0.91381 0.83945 0.83270 0.81726 0.82127 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.93 -53.44 13.29 21.45 0.28 -53.15 16 2 C 0.01 0.34 5.46 84.65 0.46 0.80 16 3 Si 0.96 43.05 29.54 68.60 2.03 45.08 16 4 H -0.27 -11.52 7.11 99.48 0.71 -10.81 16 5 H -0.28 -12.05 7.11 99.48 0.71 -11.34 16 6 H -0.28 -12.05 7.11 99.48 0.71 -11.35 16 7 C -0.55 -29.93 9.11 25.60 0.23 -29.70 16 8 H 0.06 3.14 7.74 -2.91 -0.02 3.12 16 9 C 0.02 1.02 5.09 29.85 0.15 1.17 16 10 C 0.14 5.71 5.61 86.38 0.48 6.19 16 11 N -0.72 -22.37 5.56 -463.07 -2.57 -24.94 16 12 C 0.51 14.88 7.83 87.66 0.69 15.56 16 13 O -0.59 -21.99 15.98 -3.03 -0.05 -22.04 16 14 C -0.13 -2.37 6.07 29.85 0.18 -2.19 16 15 C 0.08 1.52 4.03 71.98 0.29 1.82 16 16 O -0.32 -6.07 10.14 -92.99 -0.94 -7.01 16 17 C 0.11 2.05 6.69 22.50 0.15 2.20 16 18 C -0.19 -3.46 9.04 22.36 0.20 -3.25 16 19 C -0.12 -2.01 10.02 22.30 0.22 -1.79 16 20 C 0.04 0.69 7.30 22.37 0.16 0.85 16 21 F -0.15 -2.86 17.27 44.97 0.78 -2.09 16 22 C -0.11 -1.55 10.02 22.30 0.22 -1.33 16 23 C -0.12 -1.86 9.99 22.36 0.22 -1.64 16 24 H 0.27 14.38 8.31 -92.71 -0.77 13.61 16 25 H 0.01 0.50 8.14 -2.39 -0.02 0.48 16 26 H 0.01 0.51 8.14 -2.39 -0.02 0.49 16 27 H 0.05 2.01 8.14 -2.38 -0.02 1.99 16 28 H 0.05 2.02 8.14 -2.39 -0.02 2.00 16 29 H 0.41 10.70 8.47 -92.71 -0.79 9.91 16 30 H 0.13 1.85 8.14 -2.39 -0.02 1.83 16 31 H 0.13 1.85 8.14 -2.39 -0.02 1.83 16 32 H 0.07 1.42 7.61 -2.38 -0.02 1.40 16 33 H 0.07 1.42 7.63 -2.39 -0.02 1.41 16 34 H 0.14 2.52 6.30 -2.91 -0.02 2.50 16 35 H 0.15 2.09 8.06 -2.91 -0.02 2.07 16 36 H 0.17 1.46 8.06 -2.91 -0.02 1.44 16 37 H 0.16 1.71 8.06 -2.91 -0.02 1.68 16 Total: -1.00 -66.71 328.41 3.50 -63.21 By element: Atomic # 1 Polarization: 11.96 SS G_CDS: 0.30 Total: 12.27 kcal Atomic # 6 Polarization: -14.99 SS G_CDS: 3.68 Total: -11.32 kcal Atomic # 7 Polarization: -75.81 SS G_CDS: -2.29 Total: -78.10 kcal Atomic # 8 Polarization: -28.06 SS G_CDS: -0.99 Total: -29.05 kcal Atomic # 9 Polarization: -2.86 SS G_CDS: 0.78 Total: -2.09 kcal Atomic # 14 Polarization: 43.05 SS G_CDS: 2.03 Total: 45.08 kcal Total: -66.71 3.50 -63.21 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000342651119.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -69.590 kcal (2) G-P(sol) polarization free energy of solvation -66.707 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -136.297 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.500 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -63.207 kcal (6) G-S(sol) free energy of system = (1) + (5) -132.797 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.43 seconds