Wall clock time and date at job start Tue Mar 31 2020 05:04:09 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31519 * 1 3 3 Si 1.86800 * 120.00005 * 2 1 4 4 H 1.48503 * 109.46756 * 239.99477 * 3 2 1 5 5 H 1.48490 * 109.47381 * 359.97438 * 3 2 1 6 6 H 1.48506 * 109.47116 * 120.00078 * 3 2 1 7 7 C 1.37876 * 119.99563 * 179.97438 * 2 1 3 8 8 H 1.08006 * 119.99652 * 180.02562 * 7 2 1 9 9 C 1.50697 * 120.00428 * 0.02562 * 7 2 1 10 10 N 1.46499 * 109.47246 * 180.02562 * 9 7 2 11 11 C 1.34779 * 119.99872 * 180.02562 * 10 9 7 12 12 O 1.21286 * 120.00040 * 359.97438 * 11 10 9 13 13 C 1.50698 * 120.00201 * 179.97438 * 11 10 9 14 14 C 1.52992 * 109.47592 * 179.97438 * 13 11 10 15 15 C 1.52997 * 109.47482 * 179.97438 * 14 13 11 16 16 O 1.42898 * 109.47319 * 180.02562 * 15 14 13 17 17 C 1.35897 * 117.00481 * 180.02562 * 16 15 14 18 18 C 1.38774 * 120.03441 * 359.72088 * 17 16 15 19 19 C 1.38138 * 119.99122 * 179.74971 * 18 17 16 20 20 C 1.38257 * 120.07872 * 0.53010 * 19 18 17 21 21 C 1.38476 * 120.08328 * 359.74048 * 20 19 18 22 22 F 1.35105 * 119.99874 * 179.97438 * 21 20 19 23 23 C 1.38392 * 120.00736 * 359.97438 * 21 20 19 24 24 H 0.97002 * 119.99731 * 0.02562 * 1 2 3 25 25 H 1.09002 * 109.47120 * 59.99671 * 9 7 2 26 26 H 1.09001 * 109.46613 * 300.00022 * 9 7 2 27 27 H 0.96992 * 119.99793 * 359.97438 * 10 9 7 28 28 H 1.09002 * 109.47210 * 59.99599 * 13 11 10 29 29 H 1.09001 * 109.46665 * 299.99857 * 13 11 10 30 30 H 1.09002 * 109.47103 * 59.99616 * 14 13 11 31 31 H 1.08998 * 109.46862 * 300.00428 * 14 13 11 32 32 H 1.09002 * 109.47153 * 59.99783 * 15 14 13 33 33 H 1.09001 * 109.46832 * 299.99974 * 15 14 13 34 34 H 1.07996 * 120.00577 * 0.02562 * 18 17 16 35 35 H 1.07993 * 119.96226 * 180.27412 * 19 18 17 36 36 H 1.07999 * 119.95967 * 179.77480 * 20 19 18 37 37 H 1.07997 * 120.03638 * 180.02562 * 23 21 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2492 1.6177 0.0000 4 1 3.1030 1.6963 -1.2125 5 1 1.2843 2.7464 -0.0006 6 1 3.1030 1.6964 1.2125 7 6 2.0045 -1.1941 0.0005 8 1 3.0845 -1.1941 0.0010 9 6 1.2510 -2.4992 0.0005 10 7 2.2030 -3.6127 0.0018 11 6 1.7536 -4.8834 0.0015 12 8 0.5612 -5.1050 0.0006 13 6 2.7328 -6.0289 0.0022 14 6 1.9679 -7.3538 0.0023 15 6 2.9620 -8.5168 0.0023 16 8 2.2475 -9.7543 0.0018 17 6 2.9875 -10.8941 0.0024 18 6 4.3734 -10.8225 -0.0025 19 6 5.1248 -11.9816 0.0032 20 6 4.4978 -13.2139 0.0028 21 6 3.1150 -13.2891 0.0020 22 9 2.5041 -14.4941 0.0011 23 6 2.3588 -12.1300 0.0022 24 1 -0.4850 0.8401 -0.0004 25 1 0.6246 -2.5571 -0.8897 26 1 0.6240 -2.5566 0.8903 27 1 3.1565 -3.4355 0.0021 28 1 3.3589 -5.9712 0.8925 29 1 3.3601 -5.9712 -0.8874 30 1 1.3415 -7.4118 -0.8879 31 1 1.3409 -7.4112 0.8920 32 1 3.5887 -8.4590 0.8923 33 1 3.5886 -8.4591 -0.8877 34 1 4.8645 -9.8606 -0.0063 35 1 6.2032 -11.9253 0.0039 36 1 5.0871 -14.1189 0.0036 37 1 1.2804 -12.1882 0.0020 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000342842751.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:04:09 Heat of formation + Delta-G solvation = -114.345076 kcal Electronic energy + Delta-G solvation = -20049.484636 eV Core-core repulsion = 16512.991563 eV Total energy + Delta-G solvation = -3536.493073 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 281.121 amu Computer time = 0.40 seconds Orbital eigenvalues (eV) -49.25118 -40.43033 -38.94080 -37.64368 -34.36902 -33.69948 -32.34493 -31.20436 -30.12054 -28.17883 -26.49794 -23.62214 -23.13785 -22.31180 -21.31307 -19.70039 -18.85788 -17.26631 -16.83125 -16.64460 -16.51744 -16.25480 -15.89868 -15.64712 -15.13993 -15.05467 -14.62828 -14.17523 -14.10692 -13.56006 -13.16156 -12.84834 -12.53802 -12.33219 -12.21297 -11.96744 -11.79689 -11.70681 -11.34130 -11.13078 -11.01151 -10.89112 -10.73114 -10.34470 -9.44425 -9.26619 -9.11785 -8.76309 -8.65675 -7.92571 -6.19185 -4.26591 0.74657 0.91935 2.70048 3.21395 3.22981 3.27989 3.29444 3.31707 3.93870 4.09820 4.32468 4.37246 4.58785 4.64254 4.73285 4.78630 4.91244 4.99180 5.00875 5.16634 5.24317 5.30213 5.46930 5.56807 5.70169 5.75495 5.83682 5.93698 6.02919 6.21695 6.36654 7.04091 7.27212 7.39214 7.48456 7.62677 7.94221 8.58162 8.74203 9.05713 9.40071 10.90925 Molecular weight = 281.12amu Principal moments of inertia in cm(-1) A = 0.059659 B = 0.002096 C = 0.002030 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 469.220110 B =13353.634967 C =13791.803331 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.885 5.885 2 C 0.063 3.937 3 Si 0.905 3.095 4 H -0.275 1.275 5 H -0.285 1.285 6 H -0.275 1.275 7 C -0.545 4.545 8 H 0.062 0.938 9 C 0.249 3.751 10 N -0.713 5.713 11 C 0.497 3.503 12 O -0.555 6.555 13 C -0.138 4.138 14 C -0.103 4.103 15 C 0.059 3.941 16 O -0.307 6.307 17 C 0.166 3.834 18 C -0.221 4.221 19 C -0.050 4.050 20 C -0.197 4.197 21 C 0.138 3.862 22 F -0.135 7.135 23 C -0.193 4.193 24 H 0.267 0.733 25 H 0.027 0.973 26 H 0.027 0.973 27 H 0.391 0.609 28 H 0.090 0.910 29 H 0.090 0.910 30 H 0.082 0.918 31 H 0.083 0.917 32 H 0.066 0.934 33 H 0.066 0.934 34 H 0.137 0.863 35 H 0.136 0.864 36 H 0.135 0.865 37 H 0.144 0.856 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 12.388 -23.253 0.008 26.347 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.522 5.522 2 C -0.141 4.141 3 Si 0.732 3.268 4 H -0.201 1.201 5 H -0.211 1.211 6 H -0.201 1.201 7 C -0.583 4.583 8 H 0.081 0.919 9 C 0.128 3.872 10 N -0.361 5.361 11 C 0.282 3.718 12 O -0.435 6.435 13 C -0.178 4.178 14 C -0.141 4.141 15 C -0.016 4.016 16 O -0.220 6.220 17 C 0.119 3.881 18 C -0.240 4.240 19 C -0.068 4.068 20 C -0.216 4.216 21 C 0.119 3.881 22 F -0.114 7.114 23 C -0.213 4.213 24 H 0.076 0.924 25 H 0.045 0.955 26 H 0.045 0.955 27 H 0.223 0.777 28 H 0.109 0.891 29 H 0.109 0.891 30 H 0.101 0.899 31 H 0.101 0.899 32 H 0.084 0.916 33 H 0.084 0.916 34 H 0.154 0.846 35 H 0.153 0.847 36 H 0.153 0.847 37 H 0.162 0.838 Dipole moment (debyes) X Y Z Total from point charges 11.104 -23.248 0.008 25.763 hybrid contribution 1.021 0.928 0.000 1.380 sum 12.125 -22.319 0.008 25.400 Atomic orbital electron populations 1.69967 1.06115 1.27459 1.48684 1.24966 0.94937 0.99493 0.94679 0.86460 0.79402 0.82272 0.78676 1.20067 1.21054 1.20061 1.21187 0.93215 0.90479 1.53467 0.91945 1.19108 0.88337 0.81986 0.97760 1.46475 1.11137 1.06214 1.72295 1.20352 0.89425 0.84421 0.77640 1.90679 1.16974 1.84929 1.50902 1.21531 0.98792 0.93359 1.04147 1.21229 0.97473 0.89845 1.05559 1.22998 0.95532 0.81427 1.01627 1.86111 1.35677 1.12611 1.87559 1.18658 0.89771 0.86390 0.93263 1.21398 0.92684 1.00304 1.09623 1.20799 1.00157 0.90848 0.95012 1.21043 0.92537 0.99570 1.08484 1.17297 0.90620 0.79942 1.00288 1.91520 1.83607 1.42606 1.93655 1.20297 1.01515 0.89049 1.10410 0.92353 0.95529 0.95534 0.77677 0.89118 0.89114 0.89884 0.89878 0.91578 0.91586 0.84560 0.84651 0.84676 0.83817 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.89 -25.93 13.29 55.43 0.74 -25.19 16 2 C 0.06 1.74 5.46 -17.82 -0.10 1.64 16 3 Si 0.90 20.60 29.54 -169.99 -5.02 15.58 16 4 H -0.28 -6.12 7.11 56.52 0.40 -5.72 16 5 H -0.29 -6.48 7.11 56.52 0.40 -6.07 16 6 H -0.28 -6.12 7.11 56.52 0.40 -5.72 16 7 C -0.55 -14.60 9.28 -34.44 -0.32 -14.92 16 8 H 0.06 1.55 7.60 -52.48 -0.40 1.15 16 9 C 0.25 6.52 5.43 -5.20 -0.03 6.49 16 10 N -0.71 -14.45 5.55 -61.47 -0.34 -14.79 16 11 C 0.50 9.37 7.83 -10.99 -0.09 9.28 16 12 O -0.56 -13.01 15.98 5.55 0.09 -12.92 16 13 C -0.14 -1.67 5.70 -27.89 -0.16 -1.82 16 14 C -0.10 -1.24 4.87 -26.74 -0.13 -1.37 16 15 C 0.06 0.55 4.74 37.16 0.18 0.72 16 16 O -0.31 -3.48 10.14 -19.42 -0.20 -3.68 16 17 C 0.17 1.69 6.68 -39.23 -0.26 1.42 16 18 C -0.22 -1.79 9.04 -39.42 -0.36 -2.14 16 19 C -0.05 -0.35 10.04 -39.61 -0.40 -0.74 16 20 C -0.20 -1.53 10.02 -39.49 -0.40 -1.92 16 21 C 0.14 1.31 7.30 -39.44 -0.29 1.02 16 22 F -0.14 -1.36 17.27 2.25 0.04 -1.33 16 23 C -0.19 -1.95 9.97 -39.37 -0.39 -2.34 16 24 H 0.27 7.34 8.31 -40.82 -0.34 7.00 16 25 H 0.03 0.77 8.14 -51.93 -0.42 0.35 16 26 H 0.03 0.77 8.14 -51.93 -0.42 0.35 16 27 H 0.39 6.62 8.32 -40.82 -0.34 6.28 16 28 H 0.09 0.88 8.14 -51.93 -0.42 0.46 16 29 H 0.09 0.88 8.14 -51.93 -0.42 0.46 16 30 H 0.08 1.13 8.10 -51.93 -0.42 0.71 16 31 H 0.08 1.13 8.10 -51.93 -0.42 0.71 16 32 H 0.07 0.50 7.67 -51.93 -0.40 0.10 16 33 H 0.07 0.50 7.65 -51.93 -0.40 0.10 16 34 H 0.14 0.85 6.30 -52.49 -0.33 0.52 16 35 H 0.14 0.57 8.06 -52.49 -0.42 0.14 16 36 H 0.14 0.78 8.06 -52.49 -0.42 0.36 16 37 H 0.14 1.37 8.06 -52.49 -0.42 0.94 16 LS Contribution 328.22 15.07 4.95 4.95 Total: -1.00 -32.67 328.22 -7.28 -39.96 By element: Atomic # 1 Polarization: 6.91 SS G_CDS: -4.80 Total: 2.11 kcal Atomic # 6 Polarization: -1.96 SS G_CDS: -2.74 Total: -4.69 kcal Atomic # 7 Polarization: -40.37 SS G_CDS: 0.40 Total: -39.98 kcal Atomic # 8 Polarization: -16.49 SS G_CDS: -0.11 Total: -16.60 kcal Atomic # 9 Polarization: -1.36 SS G_CDS: 0.04 Total: -1.33 kcal Atomic # 14 Polarization: 20.60 SS G_CDS: -5.02 Total: 15.58 kcal Total LS contribution 4.95 Total: 4.95 kcal Total: -32.67 -7.28 -39.96 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000342842751.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -74.386 kcal (2) G-P(sol) polarization free energy of solvation -32.674 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -107.060 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.285 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.959 kcal (6) G-S(sol) free energy of system = (1) + (5) -114.345 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.40 seconds