Wall clock time and date at job start Tue Mar 31 2020 05:04:09 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31519 * 1 3 3 Si 1.86800 * 120.00005 * 2 1 4 4 H 1.48503 * 109.46756 * 239.99477 * 3 2 1 5 5 H 1.48490 * 109.47381 * 359.97438 * 3 2 1 6 6 H 1.48506 * 109.47116 * 120.00078 * 3 2 1 7 7 C 1.37876 * 119.99563 * 179.97438 * 2 1 3 8 8 H 1.08006 * 119.99652 * 180.02562 * 7 2 1 9 9 C 1.50697 * 120.00428 * 0.02562 * 7 2 1 10 10 N 1.46499 * 109.47246 * 180.02562 * 9 7 2 11 11 C 1.34779 * 119.99872 * 180.02562 * 10 9 7 12 12 O 1.21286 * 120.00040 * 359.97438 * 11 10 9 13 13 C 1.50698 * 120.00201 * 179.97438 * 11 10 9 14 14 C 1.52992 * 109.47592 * 179.97438 * 13 11 10 15 15 C 1.52997 * 109.47482 * 179.97438 * 14 13 11 16 16 O 1.42898 * 109.47319 * 180.02562 * 15 14 13 17 17 C 1.35897 * 117.00481 * 180.02562 * 16 15 14 18 18 C 1.38774 * 120.03441 * 359.72088 * 17 16 15 19 19 C 1.38138 * 119.99122 * 179.74971 * 18 17 16 20 20 C 1.38257 * 120.07872 * 0.53010 * 19 18 17 21 21 C 1.38476 * 120.08328 * 359.74048 * 20 19 18 22 22 F 1.35105 * 119.99874 * 179.97438 * 21 20 19 23 23 C 1.38392 * 120.00736 * 359.97438 * 21 20 19 24 24 H 0.97002 * 119.99731 * 0.02562 * 1 2 3 25 25 H 1.09002 * 109.47120 * 59.99671 * 9 7 2 26 26 H 1.09001 * 109.46613 * 300.00022 * 9 7 2 27 27 H 0.96992 * 119.99793 * 359.97438 * 10 9 7 28 28 H 1.09002 * 109.47210 * 59.99599 * 13 11 10 29 29 H 1.09001 * 109.46665 * 299.99857 * 13 11 10 30 30 H 1.09002 * 109.47103 * 59.99616 * 14 13 11 31 31 H 1.08998 * 109.46862 * 300.00428 * 14 13 11 32 32 H 1.09002 * 109.47153 * 59.99783 * 15 14 13 33 33 H 1.09001 * 109.46832 * 299.99974 * 15 14 13 34 34 H 1.07996 * 120.00577 * 0.02562 * 18 17 16 35 35 H 1.07993 * 119.96226 * 180.27412 * 19 18 17 36 36 H 1.07999 * 119.95967 * 179.77480 * 20 19 18 37 37 H 1.07997 * 120.03638 * 180.02562 * 23 21 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2492 1.6177 0.0000 4 1 3.1030 1.6963 -1.2125 5 1 1.2843 2.7464 -0.0006 6 1 3.1030 1.6964 1.2125 7 6 2.0045 -1.1941 0.0005 8 1 3.0845 -1.1941 0.0010 9 6 1.2510 -2.4992 0.0005 10 7 2.2030 -3.6127 0.0018 11 6 1.7536 -4.8834 0.0015 12 8 0.5612 -5.1050 0.0006 13 6 2.7328 -6.0289 0.0022 14 6 1.9679 -7.3538 0.0023 15 6 2.9620 -8.5168 0.0023 16 8 2.2475 -9.7543 0.0018 17 6 2.9875 -10.8941 0.0024 18 6 4.3734 -10.8225 -0.0025 19 6 5.1248 -11.9816 0.0032 20 6 4.4978 -13.2139 0.0028 21 6 3.1150 -13.2891 0.0020 22 9 2.5041 -14.4941 0.0011 23 6 2.3588 -12.1300 0.0022 24 1 -0.4850 0.8401 -0.0004 25 1 0.6246 -2.5571 -0.8897 26 1 0.6240 -2.5566 0.8903 27 1 3.1565 -3.4355 0.0021 28 1 3.3589 -5.9712 0.8925 29 1 3.3601 -5.9712 -0.8874 30 1 1.3415 -7.4118 -0.8879 31 1 1.3409 -7.4112 0.8920 32 1 3.5887 -8.4590 0.8923 33 1 3.5886 -8.4591 -0.8877 34 1 4.8645 -9.8606 -0.0063 35 1 6.2032 -11.9253 0.0039 36 1 5.0871 -14.1189 0.0036 37 1 1.2804 -12.1882 0.0020 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000342842751.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:04:09 Heat of formation + Delta-G solvation = -136.427689 kcal Electronic energy + Delta-G solvation = -20050.442210 eV Core-core repulsion = 16512.991563 eV Total energy + Delta-G solvation = -3537.450647 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 281.121 amu Computer time = 0.41 seconds Orbital eigenvalues (eV) -49.97579 -41.14021 -40.50011 -38.34675 -36.19694 -34.80685 -34.31341 -31.86613 -30.80068 -29.76819 -27.85676 -24.94091 -24.01717 -23.47095 -22.26263 -21.25141 -19.63608 -18.86061 -17.75516 -17.45148 -17.37581 -17.09710 -17.03073 -16.86668 -16.68918 -16.28294 -15.97229 -15.35980 -14.86905 -14.70675 -14.52497 -13.99781 -13.86573 -13.70385 -13.28477 -13.10068 -12.97025 -12.83551 -12.67159 -12.46697 -12.23082 -12.21943 -11.86133 -11.54973 -11.50911 -10.79057 -10.77375 -9.91383 -9.81886 -9.30982 -8.28928 -6.45929 0.11172 0.29030 1.43664 1.47816 1.56078 1.80039 1.94874 2.35096 2.59435 2.69809 3.05839 3.35408 3.72027 3.83564 3.95353 4.00272 4.02053 4.13906 4.21053 4.41132 4.43690 4.49004 4.52542 4.70487 5.01010 5.07565 5.09788 5.13294 5.21462 5.24142 5.27536 5.35099 5.49679 5.70970 5.73864 5.85345 6.37061 6.65711 6.93193 7.23925 7.53551 8.83046 Molecular weight = 281.12amu Principal moments of inertia in cm(-1) A = 0.059659 B = 0.002096 C = 0.002030 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 469.220110 B =13353.634967 C =13791.803331 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.932 5.932 2 C 0.000 4.000 3 Si 0.987 3.013 4 H -0.261 1.261 5 H -0.288 1.288 6 H -0.261 1.261 7 C -0.556 4.556 8 H 0.087 0.913 9 C 0.264 3.736 10 N -0.708 5.708 11 C 0.489 3.511 12 O -0.610 6.610 13 C -0.118 4.118 14 C -0.101 4.101 15 C 0.063 3.937 16 O -0.334 6.334 17 C 0.146 3.854 18 C -0.217 4.217 19 C -0.044 4.044 20 C -0.195 4.195 21 C 0.119 3.881 22 F -0.145 7.145 23 C -0.214 4.214 24 H 0.268 0.732 25 H -0.015 1.015 26 H -0.015 1.015 27 H 0.411 0.589 28 H 0.129 0.871 29 H 0.129 0.871 30 H 0.058 0.942 31 H 0.058 0.942 32 H 0.092 0.908 33 H 0.092 0.908 34 H 0.162 0.838 35 H 0.172 0.828 36 H 0.156 0.844 37 H 0.134 0.866 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 16.859 -23.272 0.009 28.737 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.571 5.571 2 C -0.199 4.199 3 Si 0.809 3.191 4 H -0.185 1.185 5 H -0.213 1.213 6 H -0.185 1.185 7 C -0.594 4.594 8 H 0.105 0.895 9 C 0.141 3.859 10 N -0.358 5.358 11 C 0.278 3.722 12 O -0.492 6.492 13 C -0.158 4.158 14 C -0.140 4.140 15 C -0.011 4.011 16 O -0.248 6.248 17 C 0.100 3.900 18 C -0.236 4.236 19 C -0.062 4.062 20 C -0.213 4.213 21 C 0.100 3.900 22 F -0.124 7.124 23 C -0.234 4.234 24 H 0.077 0.923 25 H 0.003 0.997 26 H 0.003 0.997 27 H 0.247 0.753 28 H 0.147 0.853 29 H 0.147 0.853 30 H 0.077 0.923 31 H 0.077 0.923 32 H 0.110 0.890 33 H 0.110 0.890 34 H 0.179 0.821 35 H 0.189 0.811 36 H 0.174 0.826 37 H 0.152 0.848 Dipole moment (debyes) X Y Z Total from point charges 15.633 -23.303 0.009 28.061 hybrid contribution -0.414 0.842 0.000 0.939 sum 15.219 -22.461 0.009 27.131 Atomic orbital electron populations 1.70144 1.08356 1.28613 1.49979 1.26118 0.95794 1.04083 0.93902 0.85182 0.77859 0.76450 0.79568 1.18545 1.21322 1.18534 1.21614 0.94403 0.90520 1.52855 0.89528 1.18525 0.88848 0.84650 0.93902 1.46207 1.11243 1.05589 1.72759 1.21652 0.89977 0.85287 0.75324 1.90660 1.20064 1.85686 1.52840 1.21500 0.97136 0.89376 1.07751 1.21136 0.97945 0.91622 1.03270 1.22999 0.94498 0.79553 1.04058 1.86057 1.37079 1.13529 1.88128 1.18822 0.90845 0.85715 0.94591 1.21723 0.91598 1.01969 1.08300 1.21237 1.01851 0.89847 0.93220 1.21382 0.91697 1.01104 1.07145 1.17530 0.91577 0.79406 1.01509 1.91490 1.83956 1.43040 1.93883 1.20385 1.01424 0.89931 1.11649 0.92300 0.99716 0.99723 0.75277 0.85272 0.85267 0.92346 0.92339 0.89029 0.89035 0.82092 0.81088 0.82629 0.84840 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.93 -56.28 13.29 21.45 0.28 -55.99 16 2 C 0.00 0.03 5.46 84.65 0.46 0.49 16 3 Si 0.99 41.71 29.54 68.60 2.03 43.73 16 4 H -0.26 -10.38 7.11 99.48 0.71 -9.67 16 5 H -0.29 -12.17 7.11 99.48 0.71 -11.46 16 6 H -0.26 -10.37 7.11 99.48 0.71 -9.67 16 7 C -0.56 -29.80 9.28 25.60 0.24 -29.56 16 8 H 0.09 4.11 7.60 -2.91 -0.02 4.09 16 9 C 0.26 14.37 5.43 85.63 0.46 14.84 16 10 N -0.71 -28.52 5.55 -466.78 -2.59 -31.11 16 11 C 0.49 18.41 7.83 87.66 0.69 19.10 16 12 O -0.61 -29.96 15.98 -3.05 -0.05 -30.01 16 13 C -0.12 -2.51 5.70 29.84 0.17 -2.34 16 14 C -0.10 -2.35 4.87 30.59 0.15 -2.20 16 15 C 0.06 0.99 4.74 71.98 0.34 1.33 16 16 O -0.33 -7.36 10.14 -92.39 -0.94 -8.29 16 17 C 0.15 2.81 6.68 22.50 0.15 2.96 16 18 C -0.22 -2.78 9.04 22.37 0.20 -2.58 16 19 C -0.04 -0.44 10.04 22.25 0.22 -0.22 16 20 C -0.19 -2.55 10.02 22.33 0.22 -2.32 16 21 C 0.12 2.21 7.30 22.36 0.16 2.38 16 22 F -0.15 -2.97 17.27 44.97 0.78 -2.19 16 23 C -0.21 -4.42 9.97 22.41 0.22 -4.20 16 24 H 0.27 15.16 8.31 -92.71 -0.77 14.39 16 25 H -0.02 -0.93 8.14 -2.39 -0.02 -0.95 16 26 H -0.02 -0.94 8.14 -2.39 -0.02 -0.96 16 27 H 0.41 13.02 8.32 -92.71 -0.77 12.25 16 28 H 0.13 1.87 8.14 -2.39 -0.02 1.85 16 29 H 0.13 1.87 8.14 -2.39 -0.02 1.85 16 30 H 0.06 1.62 8.10 -2.39 -0.02 1.60 16 31 H 0.06 1.62 8.10 -2.39 -0.02 1.60 16 32 H 0.09 0.99 7.67 -2.39 -0.02 0.97 16 33 H 0.09 0.99 7.65 -2.39 -0.02 0.97 16 34 H 0.16 1.19 6.30 -2.91 -0.02 1.17 16 35 H 0.17 0.50 8.06 -2.91 -0.02 0.48 16 36 H 0.16 1.33 8.06 -2.91 -0.02 1.31 16 37 H 0.13 2.82 8.06 -2.91 -0.02 2.80 16 Total: -1.00 -77.08 328.22 3.53 -73.55 By element: Atomic # 1 Polarization: 12.30 SS G_CDS: 0.32 Total: 12.62 kcal Atomic # 6 Polarization: -6.01 SS G_CDS: 3.70 Total: -2.32 kcal Atomic # 7 Polarization: -84.79 SS G_CDS: -2.30 Total: -87.10 kcal Atomic # 8 Polarization: -37.31 SS G_CDS: -0.99 Total: -38.30 kcal Atomic # 9 Polarization: -2.97 SS G_CDS: 0.78 Total: -2.19 kcal Atomic # 14 Polarization: 41.71 SS G_CDS: 2.03 Total: 43.73 kcal Total: -77.08 3.53 -73.55 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000342842751.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -62.874 kcal (2) G-P(sol) polarization free energy of solvation -77.079 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -139.953 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.525 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -73.554 kcal (6) G-S(sol) free energy of system = (1) + (5) -136.428 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.42 seconds