Wall clock time and date at job start Tue Mar 31 2020 05:06:49 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31517 * 1 3 3 Si 1.86799 * 119.99853 * 2 1 4 4 H 1.48501 * 109.47184 * 179.97438 * 3 2 1 5 5 H 1.48508 * 109.47022 * 300.00017 * 3 2 1 6 6 H 1.48500 * 109.47239 * 59.99845 * 3 2 1 7 7 C 1.37875 * 119.99704 * 179.97438 * 2 1 3 8 8 H 1.08010 * 119.99422 * 179.97438 * 7 2 1 9 9 C 1.50690 * 120.00458 * 0.02562 * 7 2 1 10 10 N 1.46504 * 109.47260 * 179.97438 * 9 7 2 11 11 C 1.34775 * 120.00092 * 180.02562 * 10 9 7 12 12 O 1.21287 * 119.99831 * 359.97438 * 11 10 9 13 13 C 1.50697 * 120.00286 * 179.97438 * 11 10 9 14 14 C 1.52995 * 109.47523 * 179.97438 * 13 11 10 15 15 C 1.53004 * 109.47487 * 180.02562 * 14 13 11 16 16 O 1.42893 * 109.47267 * 180.02562 * 15 14 13 17 17 C 1.35956 * 117.00026 * 179.97438 * 16 15 14 18 18 C 1.38657 * 120.06128 * 359.97438 * 17 16 15 19 19 C 1.38184 * 119.96964 * 180.02562 * 18 17 16 20 20 C 1.38265 * 120.09281 * 359.97438 * 19 18 17 21 21 C 1.38248 * 120.12705 * 0.02562 * 20 19 18 22 22 C 1.38332 * 120.03366 * 359.97438 * 21 20 19 23 23 F 1.35103 * 120.05240 * 180.02562 * 22 21 20 24 24 H 0.96996 * 120.00263 * 359.97438 * 1 2 3 25 25 H 1.09007 * 109.47335 * 59.99765 * 9 7 2 26 26 H 1.09001 * 109.47323 * 299.99770 * 9 7 2 27 27 H 0.97000 * 120.00081 * 359.97438 * 10 9 7 28 28 H 1.09004 * 109.46976 * 60.00006 * 13 11 10 29 29 H 1.09001 * 109.47011 * 300.00149 * 13 11 10 30 30 H 1.09007 * 109.47098 * 60.00288 * 14 13 11 31 31 H 1.09001 * 109.47491 * 300.00335 * 14 13 11 32 32 H 1.08994 * 109.46599 * 59.99869 * 15 14 13 33 33 H 1.09001 * 109.46881 * 300.00527 * 15 14 13 34 34 H 1.08004 * 120.01774 * 0.03769 * 18 17 16 35 35 H 1.08000 * 119.95526 * 180.27319 * 19 18 17 36 36 H 1.08001 * 119.93128 * 179.97438 * 20 19 18 37 37 H 1.07998 * 119.98480 * 180.02562 * 21 20 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2491 1.6178 0.0000 4 1 3.7092 1.3465 0.0006 5 1 1.8903 2.3965 -1.2126 6 1 1.8904 2.3965 1.2125 7 6 2.0045 -1.1941 0.0005 8 1 3.0846 -1.1940 0.0001 9 6 1.2511 -2.4991 0.0005 10 7 2.2031 -3.6127 0.0005 11 6 1.7539 -4.8833 0.0000 12 8 0.5614 -5.1049 0.0000 13 6 2.7331 -6.0288 -0.0006 14 6 1.9682 -7.3538 -0.0004 15 6 2.9624 -8.5168 -0.0004 16 8 2.2480 -9.7543 -0.0009 17 6 2.9884 -10.8945 -0.0014 18 6 4.3732 -10.8234 -0.0021 19 6 5.1239 -11.9835 -0.0032 20 6 4.4962 -13.2155 -0.0031 21 6 3.1158 -13.2909 -0.0025 22 6 2.3591 -12.1329 -0.0014 23 9 1.0101 -12.2062 -0.0003 24 1 -0.4850 0.8400 0.0004 25 1 0.6247 -2.5571 -0.8897 26 1 0.6241 -2.5567 0.8903 27 1 3.1568 -3.4354 0.0002 28 1 3.3599 -5.9714 0.8894 29 1 3.3597 -5.9706 -0.8906 30 1 1.3412 -7.4114 -0.8903 31 1 1.3418 -7.4117 0.8897 32 1 3.5891 -8.4589 0.8895 33 1 3.5891 -8.4590 -0.8904 34 1 4.8648 -9.8618 -0.0015 35 1 6.2025 -11.9279 0.0008 36 1 5.0856 -14.1205 -0.0044 37 1 2.6279 -14.2544 -0.0021 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000342843759.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:06:49 Heat of formation + Delta-G solvation = -112.691173 kcal Electronic energy + Delta-G solvation = -20267.274233 eV Core-core repulsion = 16730.852879 eV Total energy + Delta-G solvation = -3536.421354 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 281.121 amu Computer time = 0.36 seconds Orbital eigenvalues (eV) -48.97284 -40.30805 -38.92434 -37.79418 -34.35492 -33.67166 -32.33306 -31.05347 -30.21334 -28.14052 -26.50323 -23.74210 -22.81982 -22.43180 -21.30286 -19.67813 -18.68885 -17.51811 -17.02526 -16.76465 -16.71788 -15.71221 -15.67057 -15.35386 -15.09516 -14.89326 -14.71204 -14.26985 -14.03592 -13.45554 -13.15104 -12.82620 -12.54515 -12.31287 -12.04064 -11.98506 -11.84302 -11.66760 -11.37255 -11.16094 -10.95970 -10.92158 -10.71378 -10.33895 -9.40317 -9.31806 -9.09991 -8.76341 -8.51360 -7.91188 -6.18687 -4.25848 0.75641 0.90935 2.74787 3.21793 3.22096 3.28824 3.31787 3.33518 3.91074 4.08852 4.32814 4.37937 4.46362 4.75192 4.75208 4.84815 4.91255 4.95410 5.09446 5.17341 5.26845 5.32110 5.49036 5.60508 5.68686 5.77205 5.81353 6.00362 6.05459 6.21997 6.35888 7.04111 7.28677 7.40850 7.49604 7.64059 7.94942 8.59622 8.75545 9.07366 9.40928 10.91567 Molecular weight = 281.12amu Principal moments of inertia in cm(-1) A = 0.048532 B = 0.002265 C = 0.002169 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 576.803506 B =12359.096233 C =12904.848646 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.885 5.885 2 C 0.062 3.938 3 Si 0.904 3.096 4 H -0.272 1.272 5 H -0.282 1.282 6 H -0.282 1.282 7 C -0.543 4.543 8 H 0.063 0.937 9 C 0.248 3.752 10 N -0.713 5.713 11 C 0.497 3.503 12 O -0.555 6.555 13 C -0.137 4.137 14 C -0.103 4.103 15 C 0.059 3.941 16 O -0.304 6.304 17 C 0.104 3.896 18 C -0.185 4.185 19 C -0.090 4.090 20 C -0.134 4.134 21 C -0.117 4.117 22 C 0.065 3.935 23 F -0.132 7.132 24 H 0.266 0.734 25 H 0.027 0.973 26 H 0.027 0.973 27 H 0.391 0.609 28 H 0.090 0.910 29 H 0.090 0.910 30 H 0.083 0.917 31 H 0.083 0.917 32 H 0.065 0.935 33 H 0.065 0.935 34 H 0.139 0.861 35 H 0.132 0.868 36 H 0.133 0.867 37 H 0.141 0.859 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 13.094 -24.458 -0.004 27.743 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.522 5.522 2 C -0.141 4.141 3 Si 0.732 3.268 4 H -0.196 1.196 5 H -0.208 1.208 6 H -0.208 1.208 7 C -0.582 4.582 8 H 0.082 0.918 9 C 0.127 3.873 10 N -0.361 5.361 11 C 0.282 3.718 12 O -0.434 6.434 13 C -0.178 4.178 14 C -0.141 4.141 15 C -0.016 4.016 16 O -0.217 6.217 17 C 0.057 3.943 18 C -0.204 4.204 19 C -0.108 4.108 20 C -0.153 4.153 21 C -0.136 4.136 22 C 0.045 3.955 23 F -0.110 7.110 24 H 0.075 0.925 25 H 0.045 0.955 26 H 0.045 0.955 27 H 0.223 0.777 28 H 0.109 0.891 29 H 0.109 0.891 30 H 0.101 0.899 31 H 0.101 0.899 32 H 0.084 0.916 33 H 0.084 0.916 34 H 0.157 0.843 35 H 0.150 0.850 36 H 0.151 0.849 37 H 0.159 0.841 Dipole moment (debyes) X Y Z Total from point charges 11.789 -24.409 -0.003 27.107 hybrid contribution 0.889 1.155 0.000 1.458 sum 12.677 -23.254 -0.003 26.485 Atomic orbital electron populations 1.69986 1.06114 1.27229 1.48900 1.24971 0.94933 0.99515 0.94709 0.86351 0.79784 0.82930 0.77771 1.19647 1.20782 1.20787 1.21261 0.93284 0.90452 1.53173 0.91843 1.19119 0.88352 0.82018 0.97774 1.46474 1.11127 1.06203 1.72338 1.20351 0.89430 0.84416 0.77646 1.90682 1.16971 1.84921 1.50849 1.21529 0.98781 0.93352 1.04122 1.21226 0.97467 0.89799 1.05600 1.22994 0.95564 0.81510 1.01507 1.86173 1.35192 1.12383 1.87976 1.19092 0.90736 0.86154 0.98357 1.21242 0.91625 1.00544 1.06960 1.21041 1.00271 0.91667 0.97803 1.20926 0.93445 0.98278 1.02629 1.21037 0.94454 0.96915 1.01199 1.17062 0.77549 0.91713 1.09139 1.91521 1.28333 1.96965 1.94203 0.92469 0.95530 0.95515 0.77681 0.89128 0.89121 0.89871 0.89877 0.91640 0.91647 0.84309 0.85038 0.84909 0.84134 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.88 -26.09 13.29 55.43 0.74 -25.36 16 2 C 0.06 1.73 5.46 -17.82 -0.10 1.63 16 3 Si 0.90 20.74 29.54 -169.99 -5.02 15.71 16 4 H -0.27 -6.01 7.11 56.52 0.40 -5.61 16 5 H -0.28 -6.43 7.11 56.52 0.40 -6.03 16 6 H -0.28 -6.43 7.11 56.52 0.40 -6.03 16 7 C -0.54 -14.66 9.28 -34.45 -0.32 -14.98 16 8 H 0.06 1.60 7.60 -52.48 -0.40 1.20 16 9 C 0.25 6.56 5.43 -5.20 -0.03 6.53 16 10 N -0.71 -14.67 5.55 -61.47 -0.34 -15.01 16 11 C 0.50 9.58 7.83 -10.99 -0.09 9.49 16 12 O -0.55 -13.26 15.98 5.55 0.09 -13.17 16 13 C -0.14 -1.73 5.70 -27.89 -0.16 -1.89 16 14 C -0.10 -1.32 4.87 -26.73 -0.13 -1.45 16 15 C 0.06 0.60 4.74 37.16 0.18 0.77 16 16 O -0.30 -3.89 10.00 -19.60 -0.20 -4.09 16 17 C 0.10 1.16 6.69 -39.18 -0.26 0.90 16 18 C -0.18 -1.55 9.04 -39.45 -0.36 -1.91 16 19 C -0.09 -0.60 10.04 -39.59 -0.40 -1.00 16 20 C -0.13 -0.88 10.04 -39.57 -0.40 -1.28 16 21 C -0.12 -0.95 10.02 -39.54 -0.40 -1.35 16 22 C 0.07 0.73 7.31 -39.30 -0.29 0.44 16 23 F -0.13 -1.73 17.11 2.25 0.04 -1.69 16 24 H 0.27 7.32 8.31 -40.82 -0.34 6.98 16 25 H 0.03 0.78 8.14 -51.93 -0.42 0.36 16 26 H 0.03 0.78 8.14 -51.93 -0.42 0.36 16 27 H 0.39 6.73 8.32 -40.82 -0.34 6.39 16 28 H 0.09 0.92 8.14 -51.93 -0.42 0.49 16 29 H 0.09 0.92 8.14 -51.93 -0.42 0.50 16 30 H 0.08 1.20 8.10 -51.93 -0.42 0.78 16 31 H 0.08 1.20 8.10 -51.93 -0.42 0.78 16 32 H 0.07 0.54 7.66 -51.93 -0.40 0.14 16 33 H 0.07 0.54 7.66 -51.93 -0.40 0.14 16 34 H 0.14 0.90 6.30 -52.48 -0.33 0.57 16 35 H 0.13 0.54 8.06 -52.49 -0.42 0.12 16 36 H 0.13 0.52 8.06 -52.49 -0.42 0.09 16 37 H 0.14 0.84 8.06 -52.49 -0.42 0.42 16 LS Contribution 328.03 15.07 4.94 4.94 Total: -1.00 -33.81 328.03 -7.29 -41.10 By element: Atomic # 1 Polarization: 6.45 SS G_CDS: -4.80 Total: 1.65 kcal Atomic # 6 Polarization: -1.35 SS G_CDS: -2.74 Total: -4.09 kcal Atomic # 7 Polarization: -40.76 SS G_CDS: 0.40 Total: -40.37 kcal Atomic # 8 Polarization: -17.16 SS G_CDS: -0.11 Total: -17.26 kcal Atomic # 9 Polarization: -1.73 SS G_CDS: 0.04 Total: -1.69 kcal Atomic # 14 Polarization: 20.74 SS G_CDS: -5.02 Total: 15.71 kcal Total LS contribution 4.94 Total: 4.94 kcal Total: -33.81 -7.29 -41.10 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000342843759.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -71.589 kcal (2) G-P(sol) polarization free energy of solvation -33.809 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -105.399 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.292 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.102 kcal (6) G-S(sol) free energy of system = (1) + (5) -112.691 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.36 seconds