Wall clock time and date at job start Tue Mar 31 2020 05:06:49 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31517 * 1 3 3 Si 1.86799 * 119.99853 * 2 1 4 4 H 1.48501 * 109.47184 * 179.97438 * 3 2 1 5 5 H 1.48508 * 109.47022 * 300.00017 * 3 2 1 6 6 H 1.48500 * 109.47239 * 59.99845 * 3 2 1 7 7 C 1.37875 * 119.99704 * 179.97438 * 2 1 3 8 8 H 1.08010 * 119.99422 * 179.97438 * 7 2 1 9 9 C 1.50690 * 120.00458 * 0.02562 * 7 2 1 10 10 N 1.46504 * 109.47260 * 179.97438 * 9 7 2 11 11 C 1.34775 * 120.00092 * 180.02562 * 10 9 7 12 12 O 1.21287 * 119.99831 * 359.97438 * 11 10 9 13 13 C 1.50697 * 120.00286 * 179.97438 * 11 10 9 14 14 C 1.52995 * 109.47523 * 179.97438 * 13 11 10 15 15 C 1.53004 * 109.47487 * 180.02562 * 14 13 11 16 16 O 1.42893 * 109.47267 * 180.02562 * 15 14 13 17 17 C 1.35956 * 117.00026 * 179.97438 * 16 15 14 18 18 C 1.38657 * 120.06128 * 359.97438 * 17 16 15 19 19 C 1.38184 * 119.96964 * 180.02562 * 18 17 16 20 20 C 1.38265 * 120.09281 * 359.97438 * 19 18 17 21 21 C 1.38248 * 120.12705 * 0.02562 * 20 19 18 22 22 C 1.38332 * 120.03366 * 359.97438 * 21 20 19 23 23 F 1.35103 * 120.05240 * 180.02562 * 22 21 20 24 24 H 0.96996 * 120.00263 * 359.97438 * 1 2 3 25 25 H 1.09007 * 109.47335 * 59.99765 * 9 7 2 26 26 H 1.09001 * 109.47323 * 299.99770 * 9 7 2 27 27 H 0.97000 * 120.00081 * 359.97438 * 10 9 7 28 28 H 1.09004 * 109.46976 * 60.00006 * 13 11 10 29 29 H 1.09001 * 109.47011 * 300.00149 * 13 11 10 30 30 H 1.09007 * 109.47098 * 60.00288 * 14 13 11 31 31 H 1.09001 * 109.47491 * 300.00335 * 14 13 11 32 32 H 1.08994 * 109.46599 * 59.99869 * 15 14 13 33 33 H 1.09001 * 109.46881 * 300.00527 * 15 14 13 34 34 H 1.08004 * 120.01774 * 0.03769 * 18 17 16 35 35 H 1.08000 * 119.95526 * 180.27319 * 19 18 17 36 36 H 1.08001 * 119.93128 * 179.97438 * 20 19 18 37 37 H 1.07998 * 119.98480 * 180.02562 * 21 20 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2491 1.6178 0.0000 4 1 3.7092 1.3465 0.0006 5 1 1.8903 2.3965 -1.2126 6 1 1.8904 2.3965 1.2125 7 6 2.0045 -1.1941 0.0005 8 1 3.0846 -1.1940 0.0001 9 6 1.2511 -2.4991 0.0005 10 7 2.2031 -3.6127 0.0005 11 6 1.7539 -4.8833 0.0000 12 8 0.5614 -5.1049 0.0000 13 6 2.7331 -6.0288 -0.0006 14 6 1.9682 -7.3538 -0.0004 15 6 2.9624 -8.5168 -0.0004 16 8 2.2480 -9.7543 -0.0009 17 6 2.9884 -10.8945 -0.0014 18 6 4.3732 -10.8234 -0.0021 19 6 5.1239 -11.9835 -0.0032 20 6 4.4962 -13.2155 -0.0031 21 6 3.1158 -13.2909 -0.0025 22 6 2.3591 -12.1329 -0.0014 23 9 1.0101 -12.2062 -0.0003 24 1 -0.4850 0.8400 0.0004 25 1 0.6247 -2.5571 -0.8897 26 1 0.6241 -2.5567 0.8903 27 1 3.1568 -3.4354 0.0002 28 1 3.3599 -5.9714 0.8894 29 1 3.3597 -5.9706 -0.8906 30 1 1.3412 -7.4114 -0.8903 31 1 1.3418 -7.4117 0.8897 32 1 3.5891 -8.4589 0.8895 33 1 3.5891 -8.4590 -0.8904 34 1 4.8648 -9.8618 -0.0015 35 1 6.2025 -11.9279 0.0008 36 1 5.0856 -14.1205 -0.0044 37 1 2.6279 -14.2544 -0.0021 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000342843759.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:06:49 Heat of formation + Delta-G solvation = -136.179039 kcal Electronic energy + Delta-G solvation = -20268.292744 eV Core-core repulsion = 16730.852879 eV Total energy + Delta-G solvation = -3537.439865 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 281.121 amu Computer time = 0.41 seconds Orbital eigenvalues (eV) -49.83052 -41.05539 -40.50847 -38.50229 -36.21469 -34.83973 -34.32699 -31.64456 -30.95647 -29.74511 -27.87874 -25.03107 -23.94320 -23.37770 -22.33195 -21.27318 -19.49973 -18.90560 -18.08982 -17.65983 -17.57004 -17.28490 -17.01710 -16.72653 -16.12486 -16.09522 -15.76928 -15.36525 -15.00839 -14.81826 -14.43478 -14.01230 -13.85291 -13.76477 -13.28899 -13.13445 -12.83186 -12.76229 -12.76023 -12.40467 -12.31007 -12.21972 -11.92267 -11.60829 -11.46297 -10.82754 -10.79554 -9.92340 -9.83666 -9.20757 -8.30112 -6.47009 0.14756 0.29150 1.43063 1.44382 1.57892 1.77798 1.96116 2.34323 2.63371 2.68842 3.04903 3.27252 3.70019 3.82069 3.90662 3.92431 4.06928 4.22132 4.34594 4.36592 4.41243 4.45187 4.60763 4.68318 5.01348 5.03427 5.11847 5.12628 5.21577 5.22677 5.28611 5.45351 5.48815 5.69567 5.74974 5.84248 6.33689 6.65061 6.91327 7.22890 7.51747 8.82451 Molecular weight = 281.12amu Principal moments of inertia in cm(-1) A = 0.048532 B = 0.002265 C = 0.002169 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 576.803506 B =12359.096233 C =12904.848646 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.933 5.933 2 C 0.000 4.000 3 Si 0.987 3.013 4 H -0.250 1.250 5 H -0.280 1.280 6 H -0.280 1.280 7 C -0.554 4.554 8 H 0.087 0.913 9 C 0.263 3.737 10 N -0.707 5.707 11 C 0.489 3.511 12 O -0.610 6.610 13 C -0.117 4.117 14 C -0.101 4.101 15 C 0.064 3.936 16 O -0.339 6.339 17 C 0.076 3.924 18 C -0.186 4.186 19 C -0.083 4.083 20 C -0.128 4.128 21 C -0.119 4.119 22 C 0.023 3.977 23 F -0.156 7.156 24 H 0.268 0.732 25 H -0.015 1.015 26 H -0.015 1.015 27 H 0.411 0.589 28 H 0.130 0.870 29 H 0.130 0.870 30 H 0.056 0.944 31 H 0.056 0.944 32 H 0.091 0.909 33 H 0.091 0.909 34 H 0.161 0.839 35 H 0.166 0.834 36 H 0.166 0.834 37 H 0.156 0.844 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 17.883 -25.091 -0.004 30.811 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.572 5.572 2 C -0.200 4.200 3 Si 0.810 3.190 4 H -0.173 1.173 5 H -0.206 1.206 6 H -0.206 1.206 7 C -0.592 4.592 8 H 0.105 0.895 9 C 0.140 3.860 10 N -0.357 5.357 11 C 0.278 3.722 12 O -0.493 6.493 13 C -0.156 4.156 14 C -0.140 4.140 15 C -0.010 4.010 16 O -0.254 6.254 17 C 0.030 3.970 18 C -0.204 4.204 19 C -0.101 4.101 20 C -0.146 4.146 21 C -0.137 4.137 22 C 0.003 3.997 23 F -0.135 7.135 24 H 0.077 0.923 25 H 0.003 0.997 26 H 0.003 0.997 27 H 0.248 0.752 28 H 0.148 0.852 29 H 0.148 0.852 30 H 0.075 0.925 31 H 0.075 0.925 32 H 0.109 0.891 33 H 0.109 0.891 34 H 0.178 0.822 35 H 0.184 0.816 36 H 0.184 0.816 37 H 0.174 0.826 Dipole moment (debyes) X Y Z Total from point charges 16.640 -25.078 -0.004 30.097 hybrid contribution -0.604 1.224 0.000 1.365 sum 16.036 -23.855 -0.004 28.743 Atomic orbital electron populations 1.70155 1.08385 1.28511 1.50117 1.26130 0.95801 1.04128 0.93915 0.85074 0.79169 0.77135 0.77596 1.17340 1.20555 1.20564 1.21667 0.94414 0.90454 1.52627 0.89489 1.18543 0.88859 0.84681 0.93910 1.46201 1.11261 1.05535 1.72730 1.21631 0.89948 0.85306 0.75354 1.90663 1.20085 1.85692 1.52838 1.21491 0.97116 0.89236 1.07799 1.21135 0.97945 0.91772 1.03113 1.22988 0.94504 0.79589 1.03943 1.86104 1.36961 1.13569 1.88742 1.19391 0.92011 0.85413 1.00146 1.21557 0.90310 1.02368 1.06178 1.21518 1.01927 0.90960 0.95701 1.21385 0.92764 0.99806 1.00621 1.21339 0.95355 0.96572 1.00466 1.17639 0.76944 0.93264 1.11818 1.91445 1.30193 1.97148 1.94714 0.92289 0.99731 0.99715 0.75245 0.85201 0.85195 0.92525 0.92528 0.89068 0.89078 0.82158 0.81617 0.81623 0.82607 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.93 -56.74 13.29 21.45 0.28 -56.46 16 2 C 0.00 -0.02 5.46 84.65 0.46 0.44 16 3 Si 0.99 42.08 29.54 68.60 2.03 44.11 16 4 H -0.25 -9.71 7.11 99.48 0.71 -9.00 16 5 H -0.28 -11.76 7.11 99.48 0.71 -11.06 16 6 H -0.28 -11.77 7.11 99.48 0.71 -11.06 16 7 C -0.55 -29.95 9.28 25.60 0.24 -29.71 16 8 H 0.09 4.19 7.60 -2.91 -0.02 4.17 16 9 C 0.26 14.52 5.43 85.63 0.46 14.98 16 10 N -0.71 -29.07 5.55 -466.78 -2.59 -31.66 16 11 C 0.49 19.00 7.83 87.66 0.69 19.68 16 12 O -0.61 -30.80 15.98 -3.05 -0.05 -30.85 16 13 C -0.12 -2.65 5.70 29.85 0.17 -2.48 16 14 C -0.10 -2.58 4.87 30.59 0.15 -2.43 16 15 C 0.06 1.17 4.74 71.98 0.34 1.51 16 16 O -0.34 -8.79 10.00 -93.06 -0.93 -9.72 16 17 C 0.08 1.67 6.69 22.53 0.15 1.82 16 18 C -0.19 -2.57 9.04 22.36 0.20 -2.37 16 19 C -0.08 -0.78 10.04 22.26 0.22 -0.56 16 20 C -0.13 -1.24 10.04 22.28 0.22 -1.02 16 21 C -0.12 -1.79 10.02 22.29 0.22 -1.56 16 22 C 0.02 0.53 7.31 22.45 0.16 0.69 16 23 F -0.16 -4.45 17.11 44.97 0.77 -3.68 16 24 H 0.27 15.19 8.31 -92.71 -0.77 14.42 16 25 H -0.02 -0.95 8.14 -2.38 -0.02 -0.97 16 26 H -0.02 -0.95 8.14 -2.39 -0.02 -0.96 16 27 H 0.41 13.33 8.32 -92.71 -0.77 12.55 16 28 H 0.13 2.04 8.14 -2.39 -0.02 2.02 16 29 H 0.13 2.05 8.14 -2.39 -0.02 2.03 16 30 H 0.06 1.71 8.10 -2.38 -0.02 1.69 16 31 H 0.06 1.71 8.10 -2.39 -0.02 1.69 16 32 H 0.09 1.18 7.66 -2.39 -0.02 1.17 16 33 H 0.09 1.18 7.66 -2.39 -0.02 1.16 16 34 H 0.16 1.40 6.30 -2.91 -0.02 1.38 16 35 H 0.17 0.43 8.06 -2.91 -0.02 0.41 16 36 H 0.17 0.50 8.06 -2.91 -0.02 0.48 16 37 H 0.16 1.69 8.06 -2.91 -0.02 1.66 16 Total: -1.00 -81.01 328.03 3.53 -77.49 By element: Atomic # 1 Polarization: 11.47 SS G_CDS: 0.32 Total: 11.78 kcal Atomic # 6 Polarization: -4.71 SS G_CDS: 3.70 Total: -1.01 kcal Atomic # 7 Polarization: -85.82 SS G_CDS: -2.30 Total: -88.12 kcal Atomic # 8 Polarization: -39.59 SS G_CDS: -0.98 Total: -40.57 kcal Atomic # 9 Polarization: -4.45 SS G_CDS: 0.77 Total: -3.68 kcal Atomic # 14 Polarization: 42.08 SS G_CDS: 2.03 Total: 44.11 kcal Total: -81.01 3.53 -77.49 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000342843759.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -58.693 kcal (2) G-P(sol) polarization free energy of solvation -81.012 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -139.704 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.525 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -77.486 kcal (6) G-S(sol) free energy of system = (1) + (5) -136.179 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.41 seconds