Wall clock time and date at job start Tue Mar 31 2020 05:55:51 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 C 1.53000 * 109.46942 * 2 1 4 4 C 1.53002 * 109.47390 * 239.99942 * 2 1 3 5 5 C 1.53004 * 109.47241 * 119.99458 * 2 1 3 6 6 N 1.46499 * 109.46696 * 63.29043 * 5 2 1 7 7 C 1.46501 * 120.00244 * 268.69065 * 6 5 2 8 8 C 1.50697 * 109.47405 * 276.40205 * 7 6 5 9 9 H 1.07999 * 119.99729 * 359.97438 * 8 7 6 10 10 C 1.37878 * 120.00533 * 179.97438 * 8 7 6 11 11 N 1.31515 * 119.99171 * 359.97438 * 10 8 7 12 12 Si 1.86798 * 120.00226 * 179.97438 * 10 8 7 13 13 H 1.48497 * 109.47208 * 359.97438 * 12 10 8 14 14 H 1.48502 * 109.47155 * 119.99859 * 12 10 8 15 15 H 1.48498 * 109.46824 * 239.99760 * 12 10 8 16 16 C 1.34782 * 120.00241 * 88.69236 * 6 5 2 17 17 O 1.21634 * 119.99713 * 4.84588 * 16 6 5 18 18 C 1.47184 * 120.00191 * 184.84268 * 16 6 5 19 19 C 1.44422 * 123.45985 * 153.16456 * 18 16 6 20 20 C 1.32776 * 113.08587 * 179.97438 * 19 18 16 21 21 S 1.75502 * 110.57361 * 359.77881 * 20 19 18 22 22 C 1.36013 * 123.46383 * 333.14343 * 18 16 6 23 23 H 1.08996 * 109.47382 * 300.00163 * 1 2 3 24 24 H 1.08999 * 109.47234 * 60.00495 * 1 2 3 25 25 H 1.09001 * 109.47000 * 180.02562 * 1 2 3 26 26 H 1.09007 * 109.47103 * 179.97438 * 3 2 1 27 27 H 1.09001 * 109.47151 * 299.99468 * 3 2 1 28 28 H 1.08993 * 109.47703 * 59.99903 * 3 2 1 29 29 H 1.09003 * 109.46910 * 305.41345 * 4 2 1 30 30 H 1.08996 * 109.47306 * 65.41650 * 4 2 1 31 31 H 1.09004 * 109.47127 * 185.41678 * 4 2 1 32 32 H 1.08999 * 109.47270 * 303.29351 * 5 2 1 33 33 H 1.09000 * 109.47400 * 183.28460 * 5 2 1 34 34 H 1.09001 * 109.47009 * 36.40184 * 7 6 5 35 35 H 1.08999 * 109.47574 * 156.39593 * 7 6 5 36 36 H 0.97005 * 119.99240 * 180.02562 * 11 10 8 37 37 H 1.08006 * 123.45851 * 359.97438 * 19 18 16 38 38 H 1.07999 * 124.71233 * 180.02562 * 20 19 18 39 39 H 1.07997 * 124.58726 * 359.97438 * 22 18 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0399 1.4425 0.0000 4 6 2.0401 -0.7213 -1.2492 5 6 2.0400 -0.7211 1.2493 6 7 1.6175 -2.1233 1.2104 7 6 0.3512 -2.5242 1.8284 8 6 0.5607 -2.7475 3.3039 9 1 1.5395 -2.6054 3.7379 10 6 -0.4969 -3.1332 4.1000 11 7 -1.6888 -3.3057 3.5716 12 14 -0.2368 -3.4106 5.9289 13 1 1.1849 -3.1526 6.2715 14 1 -1.1076 -2.4861 6.6985 15 1 -0.5809 -4.8142 6.2704 16 6 2.3937 -3.0446 0.6060 17 8 3.4848 -2.7293 0.1707 18 6 1.9211 -4.4322 0.4729 19 6 2.3531 -5.3231 -0.5785 20 6 1.7977 -6.5266 -0.5020 21 16 0.7173 -6.6207 0.8778 22 6 1.0330 -5.0073 1.3276 23 1 -0.3634 0.5138 0.8899 24 1 -0.3633 0.5137 -0.8900 25 1 -0.3633 -1.0277 0.0005 26 1 3.1300 1.4425 0.0005 27 1 1.6767 1.9563 -0.8900 28 1 1.6767 1.9564 0.8899 29 1 1.5997 -1.7171 -1.2990 30 1 1.7581 -0.1545 -2.1366 31 1 3.1258 -0.8060 -1.2020 32 1 1.6293 -0.2425 2.1383 33 1 3.1284 -0.6704 1.2793 34 1 -0.3897 -1.7383 1.6815 35 1 -0.0019 -3.4469 1.3679 36 1 -2.4330 -3.5767 4.1317 37 1 3.0558 -5.0394 -1.3481 38 1 1.9877 -7.3366 -1.1907 39 1 0.5916 -4.5104 2.1788 RHF calculation, no. of doubly occupied orbitals= 50 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000343020148.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:55:51 Heat of formation + Delta-G solvation = -1.839889 kcal Electronic energy + Delta-G solvation = -20991.210658 eV Core-core repulsion = 18025.809352 eV Total energy + Delta-G solvation = -2965.401306 eV No. of doubly occupied orbitals = 50 Molecular weight (most abundant/longest-lived isotopes) = 281.119 amu Computer time = 0.41 seconds Orbital eigenvalues (eV) -39.70218 -37.08084 -35.86572 -34.50611 -32.47532 -29.52246 -27.69536 -26.92442 -26.69011 -25.90733 -23.92430 -22.68368 -20.36073 -18.67469 -18.03824 -16.94385 -16.70747 -15.98542 -15.18676 -14.88449 -14.57710 -14.17390 -13.70166 -13.28315 -13.22286 -12.84260 -12.51967 -12.41774 -12.18964 -11.91192 -11.88927 -11.76137 -11.22575 -11.15200 -11.08414 -10.96611 -10.71288 -10.58769 -10.42660 -10.30370 -10.21353 -9.96000 -9.74065 -9.00138 -8.74449 -8.28454 -7.91934 -7.61205 -6.32389 -4.41712 1.50241 2.13987 2.52766 2.64494 3.13830 3.23667 3.28419 3.91960 4.07938 4.27941 4.97713 5.21452 5.23845 5.31990 5.42688 5.67504 5.80552 5.91068 5.93458 5.98069 6.15208 6.21715 6.22602 6.26084 6.34870 6.37742 6.43222 6.53209 6.59781 6.67063 6.81027 6.83197 6.88845 6.90275 7.16770 7.54419 7.65210 7.92419 8.36349 8.70352 9.07241 9.27075 10.71340 Molecular weight = 281.12amu Principal moments of inertia in cm(-1) A = 0.011321 B = 0.009208 C = 0.005750 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2472.680487 B = 3040.162323 C = 4868.706212 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.141 4.141 2 C -0.085 4.085 3 C -0.135 4.135 4 C -0.131 4.131 5 C 0.132 3.868 6 N -0.584 5.584 7 C 0.206 3.794 8 C -0.543 4.543 9 H 0.065 0.935 10 C 0.066 3.934 11 N -0.883 5.883 12 Si 0.894 3.106 13 H -0.270 1.270 14 H -0.280 1.280 15 H -0.280 1.280 16 C 0.579 3.421 17 O -0.570 6.570 18 C -0.177 4.177 19 C -0.083 4.083 20 C -0.259 4.259 21 S 0.137 5.863 22 C -0.184 4.184 23 H 0.054 0.946 24 H 0.044 0.956 25 H 0.065 0.935 26 H 0.053 0.947 27 H 0.051 0.949 28 H 0.054 0.946 29 H 0.050 0.950 30 H 0.040 0.960 31 H 0.062 0.938 32 H 0.078 0.922 33 H 0.071 0.929 34 H 0.044 0.956 35 H 0.060 0.940 36 H 0.268 0.732 37 H 0.142 0.858 38 H 0.158 0.842 39 H 0.231 0.769 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.380 -0.137 -6.337 6.771 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.198 4.198 2 C -0.086 4.086 3 C -0.193 4.193 4 C -0.189 4.189 5 C 0.008 3.992 6 N -0.313 5.313 7 C 0.087 3.913 8 C -0.581 4.581 9 H 0.083 0.917 10 C -0.138 4.138 11 N -0.520 5.520 12 Si 0.721 3.279 13 H -0.195 1.195 14 H -0.206 1.206 15 H -0.206 1.206 16 C 0.367 3.633 17 O -0.453 6.453 18 C -0.193 4.193 19 C -0.113 4.113 20 C -0.393 4.393 21 S 0.401 5.599 22 C -0.320 4.320 23 H 0.073 0.927 24 H 0.063 0.937 25 H 0.084 0.916 26 H 0.072 0.928 27 H 0.070 0.930 28 H 0.073 0.927 29 H 0.069 0.931 30 H 0.059 0.941 31 H 0.081 0.919 32 H 0.096 0.904 33 H 0.090 0.910 34 H 0.062 0.938 35 H 0.077 0.923 36 H 0.078 0.922 37 H 0.160 0.840 38 H 0.176 0.824 39 H 0.246 0.754 Dipole moment (debyes) X Y Z Total from point charges 1.822 -1.154 -5.922 6.302 hybrid contribution 0.776 0.973 0.523 1.350 sum 2.599 -0.181 -5.399 5.994 Atomic orbital electron populations 1.21963 0.94462 1.02642 1.00737 1.20959 0.96109 0.95063 0.96436 1.21781 1.00772 0.95414 1.01349 1.21832 1.01671 0.99672 0.95681 1.21352 0.99753 0.81375 0.96681 1.47931 1.23001 1.06589 1.53740 1.20268 0.80424 0.98141 0.92516 1.21591 0.96249 1.47321 0.92983 0.91663 1.25002 0.94842 0.94879 0.99117 1.69942 1.00266 1.45517 1.36268 0.86485 0.78715 0.78151 0.84595 1.19451 1.20630 1.20571 1.17524 0.83995 0.84131 0.77615 1.90660 1.21395 1.81419 1.51816 1.20248 1.03445 0.96397 0.99230 1.21062 0.99835 0.91946 0.98470 1.25307 1.06903 1.01915 1.05186 1.82989 1.44043 1.10634 1.22198 1.27720 0.99859 0.98222 1.06247 0.92675 0.93732 0.91584 0.92819 0.92956 0.92730 0.93059 0.94053 0.91914 0.90378 0.91016 0.93847 0.92286 0.92220 0.84021 0.82396 0.75358 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.29 7.43 37.16 0.28 -2.01 16 2 C -0.08 -1.36 0.85 -154.51 -0.13 -1.50 16 3 C -0.14 -1.81 8.47 37.16 0.31 -1.50 16 4 C -0.13 -2.19 7.08 37.16 0.26 -1.93 16 5 C 0.13 2.47 4.61 -4.04 -0.02 2.46 16 6 N -0.58 -12.31 2.00 -176.42 -0.35 -12.66 16 7 C 0.21 4.71 3.85 -5.19 -0.02 4.69 16 8 C -0.54 -13.41 7.59 -34.44 -0.26 -13.67 16 9 H 0.07 1.68 7.81 -52.49 -0.41 1.27 16 10 C 0.07 1.64 5.26 -17.82 -0.09 1.55 16 11 N -0.88 -22.71 13.29 55.43 0.74 -21.98 16 12 Si 0.89 19.70 29.54 -169.99 -5.02 14.68 16 13 H -0.27 -6.01 7.11 56.52 0.40 -5.61 16 14 H -0.28 -6.19 7.11 56.52 0.40 -5.78 16 15 H -0.28 -6.13 7.11 56.52 0.40 -5.73 16 16 C 0.58 12.63 5.81 -12.63 -0.07 12.55 16 17 O -0.57 -13.13 14.73 5.25 0.08 -13.05 16 18 C -0.18 -3.62 5.67 -104.63 -0.59 -4.22 16 19 C -0.08 -1.45 10.21 -39.02 -0.40 -1.85 16 20 C -0.26 -3.95 11.12 28.86 0.32 -3.63 16 21 S 0.14 2.26 23.02 -107.50 -2.48 -0.21 16 22 C -0.18 -3.73 8.46 29.93 0.25 -3.48 16 23 H 0.05 0.89 8.14 -51.93 -0.42 0.47 16 24 H 0.04 0.64 8.14 -51.93 -0.42 0.22 16 25 H 0.07 1.21 5.90 -51.93 -0.31 0.90 16 26 H 0.05 0.70 8.14 -51.93 -0.42 0.27 16 27 H 0.05 0.63 8.14 -51.93 -0.42 0.21 16 28 H 0.05 0.69 8.14 -51.93 -0.42 0.27 16 29 H 0.05 0.95 6.62 -51.93 -0.34 0.61 16 30 H 0.04 0.60 8.14 -51.93 -0.42 0.18 16 31 H 0.06 1.11 7.23 -51.93 -0.38 0.74 16 32 H 0.08 1.47 8.06 -51.93 -0.42 1.05 16 33 H 0.07 1.38 7.40 -51.93 -0.38 0.99 16 34 H 0.04 1.03 5.90 -51.93 -0.31 0.73 16 35 H 0.06 1.40 4.21 -51.93 -0.22 1.18 16 36 H 0.27 6.58 8.31 -40.82 -0.34 6.24 16 37 H 0.14 2.31 8.06 -52.48 -0.42 1.88 16 38 H 0.16 1.88 8.06 -52.49 -0.42 1.46 16 39 H 0.23 5.26 3.48 -52.49 -0.18 5.07 16 LS Contribution 320.22 15.07 4.83 4.83 Total: -1.00 -26.48 320.22 -7.83 -34.31 By element: Atomic # 1 Polarization: 12.08 SS G_CDS: -5.46 Total: 6.62 kcal Atomic # 6 Polarization: -12.37 SS G_CDS: -0.16 Total: -12.53 kcal Atomic # 7 Polarization: -35.02 SS G_CDS: 0.38 Total: -34.64 kcal Atomic # 8 Polarization: -13.13 SS G_CDS: 0.08 Total: -13.05 kcal Atomic # 14 Polarization: 19.70 SS G_CDS: -5.02 Total: 14.68 kcal Atomic # 16 Polarization: 2.26 SS G_CDS: -2.48 Total: -0.21 kcal Total LS contribution 4.83 Total: 4.83 kcal Total: -26.48 -7.83 -34.31 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000343020148.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 32.472 kcal (2) G-P(sol) polarization free energy of solvation -26.478 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 5.994 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.834 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -34.312 kcal (6) G-S(sol) free energy of system = (1) + (5) -1.840 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.42 seconds